Wall clock time and date at job start Tue Mar 31 2020 00:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50696 * 119.99814 * 2 1 4 4 C 1.32991 * 119.99627 * 179.97438 * 2 1 3 5 5 C 1.47104 * 119.99556 * 179.71911 * 4 2 1 6 6 O 1.21613 * 120.00031 * 0.28106 * 5 4 2 7 7 N 1.34777 * 120.00058 * 180.27387 * 5 4 2 8 8 C 1.49629 * 126.07071 * 359.69986 * 7 5 4 9 9 C 1.51762 * 102.37889 * 154.30083 * 8 7 5 10 10 H 1.09002 * 111.73243 * 288.23895 * 9 8 7 11 11 C 1.51564 * 123.23319 * 151.77972 * 9 8 7 12 12 C 1.56339 * 101.80810 * 208.16597 * 11 9 8 13 13 C 1.55999 * 105.77249 * 25.43269 * 12 11 9 14 14 H 1.09000 * 110.53075 * 248.34204 * 13 12 11 15 15 N 1.46508 * 110.64509 * 125.64624 * 13 12 11 16 16 C 1.36938 * 119.99598 * 90.36979 * 15 13 12 17 17 H 1.07994 * 120.00035 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99591 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99961 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47346 * 119.99862 * 20 18 16 23 23 H 1.48498 * 109.47172 * 239.99709 * 20 18 16 24 24 C 1.49708 * 103.98520 * 6.96748 * 13 12 11 25 25 H 1.08991 * 108.55288 * 76.80084 * 24 13 12 26 26 C 1.49286 * 126.07733 * 180.02562 * 7 5 4 27 27 H 1.09000 * 109.46984 * 270.00046 * 1 2 3 28 28 H 1.09000 * 109.47171 * 29.99690 * 1 2 3 29 29 H 1.08993 * 109.47264 * 150.00185 * 1 2 3 30 30 H 1.09001 * 109.46858 * 240.00381 * 3 2 1 31 31 H 1.09001 * 109.47179 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46910 * 120.00566 * 3 2 1 33 33 H 1.08002 * 120.00602 * 0.02562 * 4 2 1 34 34 H 1.09006 * 110.79944 * 272.62876 * 8 7 5 35 35 H 1.08998 * 110.80767 * 36.12858 * 8 7 5 36 36 H 1.08988 * 110.96670 * 90.03473 * 11 9 8 37 37 H 1.08996 * 110.96102 * 326.28413 * 11 9 8 38 38 H 1.09007 * 110.19020 * 266.36250 * 12 11 9 39 39 H 1.09002 * 110.26041 * 144.54727 * 12 11 9 40 40 H 0.96992 * 119.99985 * 270.36425 * 15 13 12 41 41 H 0.97005 * 119.99667 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.39338 * 292.38195 * 26 7 5 43 43 H 1.09007 * 110.39508 * 54.66238 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 3.6430 -1.1518 -0.0057 6 8 4.2510 -0.0986 -0.0062 7 7 4.3169 -2.3190 -0.0108 8 6 3.7100 -3.6867 -0.0044 9 6 4.7933 -4.5263 -0.6562 10 1 4.8738 -4.3230 -1.7240 11 6 4.9897 -6.0006 -0.3646 12 6 6.5205 -6.1776 -0.6281 13 6 7.1561 -4.7719 -0.3960 14 1 7.5187 -4.3565 -1.3362 15 7 8.2438 -4.8519 0.5822 16 6 9.5260 -5.0866 0.1625 17 1 9.7353 -5.2130 -0.8894 18 6 10.5565 -5.1629 1.0894 19 7 10.3013 -5.0092 2.3714 20 14 12.3055 -5.4837 0.5171 21 1 12.3256 -5.6192 -0.9615 22 1 13.1749 -4.3499 0.9226 23 1 12.8066 -6.7373 1.1355 24 6 6.0269 -3.9485 0.1408 25 1 5.8722 -4.2123 1.1870 26 6 5.8013 -2.4770 -0.0168 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 2.8871 1.3628 -0.8900 31 1 1.5522 2.1336 0.0005 32 1 2.8872 1.3628 0.8899 33 1 1.6320 -2.0871 0.0005 34 1 3.5193 -4.0208 1.0155 35 1 2.7955 -3.7072 -0.5972 36 1 4.4030 -6.6147 -1.0475 37 1 4.7437 -6.2291 0.6723 38 1 6.6905 -6.5024 -1.6546 39 1 6.9424 -6.9010 0.0696 40 1 8.0558 -4.7386 1.5269 41 1 11.0216 -5.0622 3.0191 42 1 6.2166 -2.1284 -0.9625 43 1 6.2448 -1.9313 0.8161 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026182331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:16 Heat of formation + Delta-G solvation = -15.388505 kcal Electronic energy + Delta-G solvation = -21818.431186 eV Core-core repulsion = 18670.552732 eV Total energy + Delta-G solvation = -3147.878454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70286 -40.06140 -36.93392 -36.21164 -35.07092 -32.67485 -31.32456 -29.81827 -28.68935 -28.44428 -26.95919 -24.89649 -24.37442 -21.55067 -21.16619 -20.51934 -19.23248 -18.97546 -17.96388 -17.37663 -16.63889 -16.33310 -15.77734 -15.65519 -15.40237 -15.17768 -14.96726 -14.41380 -14.35405 -13.98380 -13.81822 -13.33636 -13.22648 -13.14589 -13.10039 -12.97180 -12.66458 -12.60812 -12.49077 -12.32501 -12.10890 -12.09599 -11.83461 -11.58726 -11.36329 -11.01223 -10.94120 -10.59253 -10.18909 -9.59149 -9.00129 -7.94774 -5.22865 0.41928 1.46076 1.46935 1.56679 1.89518 2.30043 2.55585 2.99487 3.39646 3.59333 3.66765 3.92642 3.96370 4.02135 4.21398 4.28804 4.31740 4.43010 4.51998 4.57085 4.59806 4.66730 4.70422 4.71954 4.76088 4.80883 4.91096 4.93240 4.96489 4.99818 5.13467 5.18322 5.23301 5.24191 5.36987 5.47980 5.52772 5.53755 5.62951 5.67009 6.27762 6.56363 7.18057 7.33414 8.09778 8.32265 9.28991 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.003614 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.801615 B = 7745.471377 C = 8453.038759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.028 4.028 3 C -0.117 4.117 4 C -0.242 4.242 5 C 0.545 3.455 6 O -0.590 6.590 7 N -0.624 5.624 8 C 0.122 3.878 9 C -0.105 4.105 10 H 0.093 0.907 11 C -0.085 4.085 12 C -0.138 4.138 13 C 0.189 3.811 14 H 0.045 0.955 15 N -0.734 5.734 16 C -0.235 4.235 17 H 0.076 0.924 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.297 1.297 23 H -0.293 1.293 24 C -0.123 4.123 25 H 0.062 0.938 26 C 0.138 3.862 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.156 0.844 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.205 3.485 -7.115 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.030 4.030 3 C -0.174 4.174 4 C -0.262 4.262 5 C 0.339 3.661 6 O -0.474 6.474 7 N -0.358 5.358 8 C 0.002 3.998 9 C -0.125 4.125 10 H 0.111 0.889 11 C -0.123 4.123 12 C -0.178 4.178 13 C 0.080 3.920 14 H 0.063 0.937 15 N -0.374 5.374 16 C -0.367 4.367 17 H 0.094 0.906 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.800 3.200 21 H -0.190 1.190 22 H -0.224 1.224 23 H -0.220 1.220 24 C -0.143 4.143 25 H 0.081 0.919 26 C 0.016 3.984 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.784 4.073 -7.246 25.195 hybrid contribution 1.903 -0.011 0.561 1.984 sum -21.882 4.062 -6.684 23.238 Atomic orbital electron populations 1.21076 0.87888 1.04670 1.04085 1.22927 0.97924 0.94336 0.87789 1.20993 0.99255 0.94802 1.02319 1.22444 0.90392 1.00697 1.12714 1.19023 0.89598 0.81608 0.75856 1.90759 1.71803 1.31697 1.53122 1.49834 1.06282 1.06834 1.72800 1.22023 0.96661 0.79242 1.01916 1.22622 0.93685 0.96052 1.00108 0.88898 1.21778 0.94683 0.93468 1.02394 1.23588 0.95537 0.97601 1.01083 1.20223 0.86320 0.93547 0.91957 0.93651 1.42705 1.03497 1.85829 1.05322 1.19667 0.85618 1.38673 0.92759 0.90631 1.25538 1.01927 1.04023 0.95522 1.69828 1.32185 1.59133 1.01059 0.85115 0.80360 0.76661 0.77907 1.18957 1.22444 1.21999 1.21862 0.98084 0.93277 1.01108 0.91944 1.20697 0.81016 0.96203 1.00502 0.88996 0.89757 0.89483 0.92104 0.90387 0.92434 0.82628 0.89902 0.86866 0.88711 0.91115 0.91424 0.93341 0.79667 0.94160 0.92531 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.98 71.24 0.71 -0.37 16 2 C -0.03 -0.49 6.11 -17.62 -0.11 -0.60 16 3 C -0.12 -2.54 8.33 71.23 0.59 -1.95 16 4 C -0.24 -4.91 9.10 23.43 0.21 -4.70 16 5 C 0.54 16.33 7.79 86.57 0.67 17.00 16 6 O -0.59 -22.37 13.43 -4.07 -0.05 -22.42 16 7 N -0.62 -17.68 3.42 -818.91 -2.80 -20.49 16 8 C 0.12 2.40 6.32 85.36 0.54 2.94 16 9 C -0.11 -2.39 3.15 -9.96 -0.03 -2.42 16 10 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 11 C -0.09 -1.88 6.59 31.29 0.21 -1.67 16 12 C -0.14 -4.36 6.74 32.80 0.22 -4.14 16 13 C 0.19 7.29 3.44 44.97 0.15 7.44 16 14 H 0.05 1.82 8.09 -2.39 -0.02 1.80 16 15 N -0.73 -37.17 5.11 -323.01 -1.65 -38.82 16 16 C -0.24 -13.14 9.96 84.03 0.84 -12.31 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 20 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 C -0.12 -4.03 2.22 -11.19 -0.02 -4.05 16 25 H 0.06 2.20 7.72 -2.39 -0.02 2.18 16 26 C 0.14 4.75 6.82 84.78 0.58 5.33 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.59 8.05 -2.39 -0.02 0.57 16 29 H 0.09 0.54 8.07 -2.39 -0.02 0.52 16 30 H 0.06 1.59 7.21 -2.39 -0.02 1.57 16 31 H 0.08 1.20 7.94 -2.39 -0.02 1.18 16 32 H 0.06 1.54 7.23 -2.39 -0.02 1.52 16 33 H 0.16 2.08 6.89 -2.91 -0.02 2.06 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 35 H 0.11 1.45 7.20 -2.39 -0.02 1.43 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 1.80 7.98 -2.39 -0.02 1.78 16 40 H 0.37 20.41 7.68 -92.71 -0.71 19.70 16 41 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -72.56 343.31 3.11 -69.45 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.27 Total: 27.08 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 5.03 Total: -3.59 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -4.17 Total: -119.45 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -72.56 3.11 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.062 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds