Wall clock time and date at job start Tue Mar 31 2020 00:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50703 * 120.00017 * 2 1 4 4 C 1.33000 * 120.00507 * 180.02562 * 2 1 3 5 5 C 1.47099 * 119.99320 * 352.83592 * 4 2 1 6 6 O 1.21612 * 120.00837 * 354.00671 * 5 4 2 7 7 N 1.34778 * 119.99604 * 174.00962 * 5 4 2 8 8 C 1.49212 * 126.05954 * 0.02562 * 7 5 4 9 9 C 1.50358 * 104.86338 * 172.94380 * 8 7 5 10 10 H 1.09005 * 110.05203 * 278.93387 * 9 8 7 11 11 C 1.51003 * 125.54451 * 144.30509 * 9 8 7 12 12 C 1.57461 * 101.10236 * 203.43837 * 11 9 8 13 13 C 1.55939 * 105.70355 * 25.59783 * 12 11 9 14 14 H 1.09001 * 110.61262 * 125.86959 * 13 12 11 15 15 N 1.46502 * 110.49526 * 248.48648 * 13 12 11 16 16 C 1.36941 * 119.99613 * 269.73059 * 15 13 12 17 17 H 1.07996 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99819 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47173 * 119.99838 * 20 18 16 23 23 H 1.48497 * 109.47058 * 239.99804 * 20 18 16 24 24 C 1.50293 * 104.15129 * 7.15154 * 13 12 11 25 25 H 1.09002 * 109.99675 * 80.47724 * 24 13 12 26 26 C 1.49697 * 126.05782 * 179.71804 * 7 5 4 27 27 H 1.08999 * 109.47217 * 264.38835 * 1 2 3 28 28 H 1.08994 * 109.47766 * 24.39179 * 1 2 3 29 29 H 1.09003 * 109.46901 * 144.39097 * 1 2 3 30 30 H 1.09002 * 109.47351 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47055 * 300.00220 * 3 2 1 32 32 H 1.08995 * 109.47371 * 59.99925 * 3 2 1 33 33 H 1.07992 * 120.00045 * 172.56254 * 4 2 1 34 34 H 1.08997 * 110.36569 * 291.78526 * 8 7 5 35 35 H 1.08998 * 110.35987 * 53.98918 * 8 7 5 36 36 H 1.08996 * 110.99687 * 322.08050 * 11 9 8 37 37 H 1.09003 * 111.00259 * 85.91623 * 11 9 8 38 38 H 1.08996 * 110.56299 * 266.37147 * 12 11 9 39 39 H 1.09005 * 109.96660 * 144.50847 * 12 11 9 40 40 H 0.96997 * 120.00108 * 89.72940 * 15 13 12 41 41 H 0.97002 * 119.99583 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.84778 * 273.05095 * 26 7 5 43 43 H 1.08999 * 110.85090 * 36.66673 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4451 -2.4207 0.1578 6 8 0.2529 -2.4129 0.3979 7 7 2.1004 -3.5923 0.0368 8 6 3.5543 -3.7594 -0.2539 9 6 3.8095 -5.2342 -0.1096 10 1 3.9310 -5.4912 0.9427 11 6 4.7697 -6.0450 -0.9466 12 6 4.1645 -7.4900 -0.7883 13 6 2.6508 -7.2817 -0.4765 14 1 2.0337 -7.8405 -1.1800 15 7 2.3505 -7.6843 0.8997 16 6 1.9763 -8.9737 1.1696 17 1 1.9023 -9.6935 0.3680 18 6 1.6922 -9.3553 2.4737 19 7 1.7820 -8.4778 3.4506 20 14 1.1812 -11.1139 2.8419 21 1 1.1549 -11.8962 1.5799 22 1 2.1533 -11.7250 3.7835 23 1 -0.1714 -11.1183 3.4547 24 6 2.4398 -5.8038 -0.6503 25 1 2.3302 -5.5648 -1.7082 26 6 1.4998 -4.9563 0.1767 27 1 -0.3633 -0.1005 1.0227 28 1 -0.3634 0.9358 -0.4244 29 1 -0.3633 -0.8355 -0.5984 30 1 3.3321 1.1060 -0.0005 31 1 1.9971 1.8767 -0.8900 32 1 1.9972 1.8767 0.8899 33 1 3.2451 -1.1555 -0.1216 34 1 3.7780 -3.4336 -1.2697 35 1 4.1517 -3.1975 0.4641 36 1 4.7579 -5.7142 -1.9851 37 1 5.7785 -6.0017 -0.5360 38 1 4.6480 -8.0198 0.0323 39 1 4.2838 -8.0474 -1.7174 40 1 2.4166 -7.0376 1.6196 41 1 1.5831 -8.7444 4.3618 42 1 1.5008 -5.2757 1.2189 43 1 0.4915 -4.9805 -0.2365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026182332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:20 Heat of formation + Delta-G solvation = 6.306519 kcal Electronic energy + Delta-G solvation = -22107.781778 eV Core-core repulsion = 18960.844091 eV Total energy + Delta-G solvation = -3146.937687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43298 -38.82061 -35.60109 -34.94996 -33.27196 -30.83088 -29.89475 -28.45306 -27.95593 -27.35794 -25.40826 -23.37121 -23.02939 -20.15995 -19.95974 -18.86979 -17.97147 -17.45850 -16.75919 -15.85226 -15.18755 -14.76300 -14.46408 -14.29864 -14.20950 -13.97969 -13.51499 -13.39748 -13.02455 -12.75172 -12.50800 -12.37736 -12.19288 -11.79801 -11.77714 -11.58427 -11.45737 -11.14248 -10.93498 -10.81069 -10.57426 -10.46090 -10.24424 -10.04300 -9.63681 -9.60019 -9.32665 -9.18062 -8.91605 -8.33246 -6.96584 -5.76956 -3.05885 1.38100 3.13798 3.43753 3.45781 3.49591 3.51767 4.24834 4.59646 4.61051 4.73692 4.99009 5.06970 5.20582 5.28712 5.31637 5.39192 5.46781 5.55732 5.57772 5.61383 5.63285 5.69610 5.80727 5.84758 5.85776 5.94113 6.03170 6.08965 6.18981 6.30829 6.33663 6.41420 6.44790 6.48957 6.54771 6.60197 6.68988 6.85805 7.06265 7.71718 7.78203 8.41480 8.42030 9.52866 10.09472 10.43949 11.45551 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.004113 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.238234 B = 6806.681190 C = 7605.046373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.042 4.042 3 C -0.124 4.124 4 C -0.225 4.225 5 C 0.557 3.443 6 O -0.545 6.545 7 N -0.622 5.622 8 C 0.124 3.876 9 C -0.130 4.130 10 H 0.089 0.911 11 C -0.096 4.096 12 C -0.144 4.144 13 C 0.192 3.808 14 H 0.056 0.944 15 N -0.718 5.718 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.120 4.120 25 H 0.075 0.925 26 C 0.131 3.869 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.084 0.916 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 16.022 -10.006 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.246 4.246 5 C 0.349 3.651 6 O -0.425 6.425 7 N -0.356 5.356 8 C 0.002 3.998 9 C -0.149 4.149 10 H 0.107 0.893 11 C -0.134 4.134 12 C -0.185 4.185 13 C 0.081 3.919 14 H 0.074 0.926 15 N -0.360 5.360 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.140 4.140 25 H 0.093 0.907 26 C 0.010 3.990 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.616 15.907 -9.858 19.275 hybrid contribution 0.026 -0.809 0.575 0.993 sum 4.641 15.097 -9.283 18.321 Atomic orbital electron populations 1.21114 0.90935 1.02191 1.03724 1.22528 0.96908 0.94358 0.90582 1.20983 0.99784 0.94557 1.02741 1.22448 1.00082 0.91973 1.10099 1.18181 0.86471 0.83179 0.77261 1.90755 1.15040 1.87052 1.49695 1.49772 1.09603 1.05988 1.70270 1.21234 0.81320 0.96895 1.00384 1.22236 0.97577 0.92838 1.02214 0.89286 1.21890 0.97414 0.95827 0.98269 1.24048 0.98751 0.94634 1.01081 1.20150 0.92783 0.89928 0.89035 0.92566 1.42451 1.81016 1.10348 1.02152 1.19297 1.37772 0.87414 0.92587 0.91066 1.24737 1.02533 0.97772 0.95806 1.69667 1.55572 1.33212 0.99550 0.86140 0.77851 0.84530 0.77798 1.20576 1.21958 1.21911 1.22533 0.94993 0.97338 0.99109 0.90708 1.21509 0.96717 0.79372 1.01366 0.90378 0.92948 0.89216 0.91509 0.90880 0.90509 0.85883 0.91652 0.91362 0.91997 0.92129 0.90534 0.92934 0.78123 0.93554 0.89763 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.48 36.00 0.31 -1.15 16 2 C -0.04 -0.46 6.11 -101.17 -0.62 -1.08 16 3 C -0.12 -0.92 10.10 36.01 0.36 -0.56 16 4 C -0.23 -2.80 9.15 -37.81 -0.35 -3.15 16 5 C 0.56 9.08 7.67 -12.67 -0.10 8.98 16 6 O -0.54 -10.51 13.61 5.27 0.07 -10.44 16 7 N -0.62 -9.82 3.42 -172.79 -0.59 -10.41 16 8 C 0.12 1.58 6.06 -3.85 -0.02 1.55 16 9 C -0.13 -1.87 2.70 -90.26 -0.24 -2.12 16 10 H 0.09 1.52 7.63 -51.93 -0.40 1.13 16 11 C -0.10 -1.26 6.78 -25.30 -0.17 -1.43 16 12 C -0.14 -2.36 6.77 -22.73 -0.15 -2.52 16 13 C 0.19 3.64 3.46 -67.71 -0.23 3.41 16 14 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 15 N -0.72 -17.24 4.78 -53.21 -0.25 -17.49 16 16 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 C -0.12 -1.95 2.63 -90.20 -0.24 -2.19 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 C 0.13 2.35 6.51 -3.17 -0.02 2.33 16 27 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 28 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.09 1.28 6.14 -51.93 -0.32 0.96 16 30 H 0.07 0.44 7.82 -51.93 -0.41 0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.12 1.25 7.14 -52.49 -0.37 0.87 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.78 7.99 -51.93 -0.42 0.36 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.44 7.98 -51.93 -0.41 1.03 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.38 9.85 6.12 -40.82 -0.25 9.60 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.75 6.90 -51.93 -0.36 1.39 16 43 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -31.04 340.79 -8.78 -39.81 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.12 Total: 8.28 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.72 Total: -4.99 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.12 Total: -55.07 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.04 -8.78 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.120 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds