Wall clock time and date at job start Tue Mar 31 2020 00:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50703 * 120.00017 * 2 1 4 4 C 1.33000 * 120.00507 * 180.02562 * 2 1 3 5 5 C 1.47099 * 119.99320 * 352.83592 * 4 2 1 6 6 O 1.21612 * 120.00837 * 354.00671 * 5 4 2 7 7 N 1.34778 * 119.99604 * 174.00962 * 5 4 2 8 8 C 1.49212 * 126.05954 * 0.02562 * 7 5 4 9 9 C 1.50358 * 104.86338 * 172.94380 * 8 7 5 10 10 H 1.09005 * 110.05203 * 278.93387 * 9 8 7 11 11 C 1.51003 * 125.54451 * 144.30509 * 9 8 7 12 12 C 1.57461 * 101.10236 * 203.43837 * 11 9 8 13 13 C 1.55939 * 105.70355 * 25.59783 * 12 11 9 14 14 H 1.09001 * 110.61262 * 125.86959 * 13 12 11 15 15 N 1.46502 * 110.49526 * 248.48648 * 13 12 11 16 16 C 1.36941 * 119.99613 * 269.73059 * 15 13 12 17 17 H 1.07996 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99819 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47173 * 119.99838 * 20 18 16 23 23 H 1.48497 * 109.47058 * 239.99804 * 20 18 16 24 24 C 1.50293 * 104.15129 * 7.15154 * 13 12 11 25 25 H 1.09002 * 109.99675 * 80.47724 * 24 13 12 26 26 C 1.49697 * 126.05782 * 179.71804 * 7 5 4 27 27 H 1.08999 * 109.47217 * 264.38835 * 1 2 3 28 28 H 1.08994 * 109.47766 * 24.39179 * 1 2 3 29 29 H 1.09003 * 109.46901 * 144.39097 * 1 2 3 30 30 H 1.09002 * 109.47351 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47055 * 300.00220 * 3 2 1 32 32 H 1.08995 * 109.47371 * 59.99925 * 3 2 1 33 33 H 1.07992 * 120.00045 * 172.56254 * 4 2 1 34 34 H 1.08997 * 110.36569 * 291.78526 * 8 7 5 35 35 H 1.08998 * 110.35987 * 53.98918 * 8 7 5 36 36 H 1.08996 * 110.99687 * 322.08050 * 11 9 8 37 37 H 1.09003 * 111.00259 * 85.91623 * 11 9 8 38 38 H 1.08996 * 110.56299 * 266.37147 * 12 11 9 39 39 H 1.09005 * 109.96660 * 144.50847 * 12 11 9 40 40 H 0.96997 * 120.00108 * 89.72940 * 15 13 12 41 41 H 0.97002 * 119.99583 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.84778 * 273.05095 * 26 7 5 43 43 H 1.08999 * 110.85090 * 36.66673 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4451 -2.4207 0.1578 6 8 0.2529 -2.4129 0.3979 7 7 2.1004 -3.5923 0.0368 8 6 3.5543 -3.7594 -0.2539 9 6 3.8095 -5.2342 -0.1096 10 1 3.9310 -5.4912 0.9427 11 6 4.7697 -6.0450 -0.9466 12 6 4.1645 -7.4900 -0.7883 13 6 2.6508 -7.2817 -0.4765 14 1 2.0337 -7.8405 -1.1800 15 7 2.3505 -7.6843 0.8997 16 6 1.9763 -8.9737 1.1696 17 1 1.9023 -9.6935 0.3680 18 6 1.6922 -9.3553 2.4737 19 7 1.7820 -8.4778 3.4506 20 14 1.1812 -11.1139 2.8419 21 1 1.1549 -11.8962 1.5799 22 1 2.1533 -11.7250 3.7835 23 1 -0.1714 -11.1183 3.4547 24 6 2.4398 -5.8038 -0.6503 25 1 2.3302 -5.5648 -1.7082 26 6 1.4998 -4.9563 0.1767 27 1 -0.3633 -0.1005 1.0227 28 1 -0.3634 0.9358 -0.4244 29 1 -0.3633 -0.8355 -0.5984 30 1 3.3321 1.1060 -0.0005 31 1 1.9971 1.8767 -0.8900 32 1 1.9972 1.8767 0.8899 33 1 3.2451 -1.1555 -0.1216 34 1 3.7780 -3.4336 -1.2697 35 1 4.1517 -3.1975 0.4641 36 1 4.7579 -5.7142 -1.9851 37 1 5.7785 -6.0017 -0.5360 38 1 4.6480 -8.0198 0.0323 39 1 4.2838 -8.0474 -1.7174 40 1 2.4166 -7.0376 1.6196 41 1 1.5831 -8.7444 4.3618 42 1 1.5008 -5.2757 1.2189 43 1 0.4915 -4.9805 -0.2365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026182332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:19 Heat of formation + Delta-G solvation = -12.751216 kcal Electronic energy + Delta-G solvation = -22108.608184 eV Core-core repulsion = 18960.844091 eV Total energy + Delta-G solvation = -3147.764092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71537 -40.07509 -36.82484 -36.17998 -35.01651 -32.59252 -31.19061 -29.92217 -28.68676 -28.40325 -26.91262 -25.17890 -24.37638 -21.27011 -21.13792 -20.34004 -19.43401 -19.01514 -17.96150 -17.18716 -16.72725 -16.23500 -15.77523 -15.70135 -15.40681 -15.12172 -14.80722 -14.66003 -14.47823 -13.88020 -13.72177 -13.36494 -13.23525 -13.18325 -13.06353 -12.87226 -12.67042 -12.61763 -12.41759 -12.30398 -12.17158 -12.02509 -11.76020 -11.50534 -11.42083 -10.98848 -10.89300 -10.57155 -10.14260 -9.56779 -8.97735 -7.93494 -5.20887 0.41317 1.46160 1.47172 1.56743 1.92978 2.30184 2.56508 3.00580 3.41020 3.64336 3.77492 3.92750 3.95922 4.02318 4.23149 4.26023 4.35073 4.46147 4.49077 4.55962 4.62125 4.68261 4.70293 4.74043 4.79629 4.84594 4.92093 4.95076 4.96744 5.02942 5.16074 5.19794 5.22952 5.26909 5.39456 5.45113 5.54714 5.55068 5.67759 5.68980 6.29217 6.59065 7.19077 7.35027 8.12659 8.34400 9.30268 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.004113 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.238234 B = 6806.681190 C = 7605.046373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.028 4.028 3 C -0.121 4.121 4 C -0.242 4.242 5 C 0.544 3.456 6 O -0.590 6.590 7 N -0.624 5.624 8 C 0.127 3.873 9 C -0.114 4.114 10 H 0.053 0.947 11 C -0.079 4.079 12 C -0.138 4.138 13 C 0.180 3.820 14 H 0.050 0.950 15 N -0.731 5.731 16 C -0.233 4.233 17 H 0.077 0.923 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.295 1.295 23 H -0.299 1.299 24 C -0.118 4.118 25 H 0.101 0.899 26 C 0.134 3.866 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.043 0.957 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 17.832 -12.408 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.030 4.030 3 C -0.177 4.177 4 C -0.262 4.262 5 C 0.339 3.661 6 O -0.474 6.474 7 N -0.358 5.358 8 C 0.006 3.994 9 C -0.134 4.134 10 H 0.072 0.928 11 C -0.117 4.117 12 C -0.179 4.179 13 C 0.071 3.929 14 H 0.068 0.932 15 N -0.371 5.371 16 C -0.365 4.365 17 H 0.095 0.905 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.222 1.222 23 H -0.226 1.226 24 C -0.138 4.138 25 H 0.119 0.881 26 C 0.012 3.988 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.172 0.828 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.204 0.796 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.849 17.717 -12.331 22.646 hybrid contribution -0.735 -1.316 1.269 1.970 sum 6.114 16.401 -11.062 20.706 Atomic orbital electron populations 1.21075 0.92234 1.02479 1.02423 1.22914 0.96384 0.95858 0.87821 1.21062 1.00150 0.92381 1.04070 1.22475 1.01255 0.90035 1.12429 1.19022 0.86303 0.84441 0.76384 1.90736 1.17158 1.87743 1.51783 1.49862 1.10987 1.04819 1.70092 1.21432 0.79303 0.95610 1.03017 1.22177 0.96553 0.94211 1.00411 0.92826 1.21845 0.97326 0.92541 1.00014 1.23838 0.95975 0.97246 1.00820 1.20467 0.94691 0.91622 0.86146 0.93237 1.42625 1.81231 1.09194 1.04039 1.19692 1.35560 0.88648 0.92607 0.90486 1.25513 1.04041 1.01513 0.95942 1.69833 1.57871 1.35057 0.99531 0.85122 0.76711 0.80395 0.77862 1.18865 1.22185 1.22638 1.22388 0.95897 0.95429 1.00077 0.88131 1.21194 0.96685 0.81769 0.99154 0.91944 0.90050 0.92102 0.89941 0.88993 0.89397 0.82836 0.88101 0.89366 0.88539 0.90486 0.93533 0.90813 0.79550 0.94303 0.93844 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.48 71.23 0.60 -2.31 16 2 C -0.03 -0.55 6.11 -17.62 -0.11 -0.66 16 3 C -0.12 -1.29 10.10 71.24 0.72 -0.57 16 4 C -0.24 -5.50 9.15 23.43 0.21 -5.28 16 5 C 0.54 17.82 7.67 86.57 0.66 18.48 16 6 O -0.59 -23.98 13.61 -4.07 -0.06 -24.04 16 7 N -0.62 -19.56 3.42 -818.84 -2.80 -22.36 16 8 C 0.13 2.87 6.06 85.00 0.51 3.38 16 9 C -0.11 -3.11 2.70 -10.56 -0.03 -3.14 16 10 H 0.05 1.85 7.63 -2.38 -0.02 1.84 16 11 C -0.08 -1.81 6.78 31.52 0.21 -1.59 16 12 C -0.14 -4.31 6.77 33.19 0.22 -4.09 16 13 C 0.18 6.83 3.46 45.13 0.16 6.98 16 14 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 15 N -0.73 -36.45 4.78 -322.25 -1.54 -37.99 16 16 C -0.23 -12.92 9.96 84.03 0.84 -12.09 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 20 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 24 C -0.12 -3.79 2.63 -10.52 -0.03 -3.82 16 25 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 26 C 0.13 5.07 6.51 85.17 0.55 5.62 16 27 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 28 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 29 H 0.06 1.79 6.14 -2.39 -0.01 1.77 16 30 H 0.08 0.68 7.82 -2.39 -0.02 0.66 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.15 2.48 7.14 -2.91 -0.02 2.46 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.70 7.99 -2.39 -0.02 1.68 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.74 7.98 -2.39 -0.02 1.72 16 39 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.37 20.26 6.12 -92.71 -0.57 19.69 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.04 1.97 6.90 -2.39 -0.02 1.96 16 43 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 Total: -1.00 -72.79 340.79 3.33 -69.45 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.42 Total: 29.53 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.01 Total: -3.15 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -4.06 Total: -120.81 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -72.79 3.33 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.701 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds