Wall clock time and date at job start Tue Mar 31 2020 00:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 119.99876 * 2 1 4 4 C 1.32991 * 120.00080 * 179.72813 * 2 1 3 5 5 C 1.47097 * 120.00150 * 352.69097 * 4 2 1 6 6 O 1.21613 * 119.99879 * 354.33046 * 5 4 2 7 7 N 1.34781 * 120.00281 * 174.32085 * 5 4 2 8 8 C 1.47355 * 125.70060 * 0.03244 * 7 5 4 9 9 C 1.54653 * 105.13168 * 204.81074 * 8 7 5 10 10 H 1.09004 * 113.79424 * 200.27846 * 9 8 7 11 11 C 1.54451 * 108.63780 * 72.46521 * 9 8 7 12 12 C 1.54110 * 104.73292 * 216.46107 * 11 9 8 13 13 C 1.53725 * 106.66968 * 23.40886 * 12 11 9 14 14 H 1.09002 * 109.91402 * 239.75726 * 13 12 11 15 15 N 1.46495 * 109.91383 * 118.66665 * 13 12 11 16 16 C 1.36940 * 120.00281 * 156.06285 * 15 13 12 17 17 H 1.08002 * 119.99286 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00142 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99723 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47140 * 60.00619 * 20 18 16 22 22 H 1.48508 * 109.46894 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47450 * 300.00387 * 20 18 16 24 24 C 1.55304 * 107.50731 * 358.33309 * 13 12 11 25 25 H 1.08999 * 114.00431 * 216.17593 * 24 13 12 26 26 C 1.47031 * 125.70384 * 179.71494 * 7 5 4 27 27 H 1.09001 * 109.47171 * 265.03573 * 1 2 3 28 28 H 1.08998 * 109.47100 * 25.03708 * 1 2 3 29 29 H 1.08997 * 109.47318 * 145.04059 * 1 2 3 30 30 H 1.09007 * 109.47244 * 179.72851 * 3 2 1 31 31 H 1.09004 * 109.47163 * 299.72562 * 3 2 1 32 32 H 1.08996 * 109.47380 * 59.72643 * 3 2 1 33 33 H 1.08003 * 119.99833 * 172.69692 * 4 2 1 34 34 H 1.09001 * 110.31089 * 323.72535 * 8 7 5 35 35 H 1.08997 * 110.30745 * 85.89632 * 8 7 5 36 36 H 1.08995 * 110.39058 * 335.27449 * 11 9 8 37 37 H 1.09003 * 110.38729 * 97.64827 * 11 9 8 38 38 H 1.08996 * 110.01860 * 142.70729 * 12 11 9 39 39 H 1.08994 * 110.02036 * 264.06326 * 12 11 9 40 40 H 0.97002 * 120.00109 * 336.06209 * 15 13 12 41 41 H 0.97009 * 119.99978 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.82997 * 297.26196 * 26 7 5 43 43 H 1.09003 * 109.82301 * 58.22029 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0055 5 6 1.4455 -2.4197 0.1735 6 8 0.2527 -2.4103 0.4104 7 7 2.1017 -3.5919 0.0649 8 6 3.5394 -3.7497 -0.2173 9 6 3.6738 -5.1513 -0.8570 10 1 4.6819 -5.5628 -0.8066 11 6 3.0945 -5.0984 -2.2878 12 6 2.4111 -6.4656 -2.4847 13 6 2.0823 -7.0004 -1.0814 14 1 2.5865 -7.9531 -0.9196 15 7 0.6344 -7.1719 -0.9395 16 6 0.1365 -8.0582 -0.0220 17 1 0.8114 -8.6305 0.5973 18 6 -1.2355 -8.2203 0.1129 19 7 -2.0579 -7.5225 -0.6414 20 14 -1.9145 -9.4289 1.3650 21 1 -1.4641 -9.0380 2.7250 22 1 -3.3985 -9.4154 1.3117 23 1 -1.4208 -10.7943 1.0535 24 6 2.6113 -5.9655 -0.0513 25 1 3.0127 -6.4112 0.8588 26 6 1.5041 -4.9269 0.2147 27 1 -0.3633 -0.0889 1.0238 28 1 -0.3633 0.9311 -0.4349 29 1 -0.3634 -0.8422 -0.5888 30 1 3.3322 1.1060 0.0049 31 1 2.0008 1.8746 -0.8925 32 1 1.9935 1.8788 0.8875 33 1 3.2454 -1.1560 -0.1134 34 1 3.8745 -2.9818 -0.9146 35 1 4.1142 -3.6991 0.7074 36 1 2.3645 -4.2935 -2.3725 37 1 3.8941 -4.9652 -3.0165 38 1 1.4946 -6.3450 -3.0621 39 1 3.0871 -7.1504 -2.9966 40 1 0.0282 -6.6576 -1.4954 41 1 -3.0167 -7.6361 -0.5474 42 1 1.1166 -5.0472 1.2263 43 1 0.6986 -5.0546 -0.5086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026182333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:24 Heat of formation + Delta-G solvation = -3.448706 kcal Electronic energy + Delta-G solvation = -22525.698000 eV Core-core repulsion = 19378.337294 eV Total energy + Delta-G solvation = -3147.360705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.24808 -38.52665 -35.42557 -34.83180 -33.17764 -30.83583 -29.66036 -28.33501 -27.85740 -27.40171 -25.25823 -23.49403 -22.91309 -20.14934 -19.74071 -18.69925 -17.80683 -17.32919 -16.93342 -15.71904 -14.97923 -14.78948 -14.73982 -14.12915 -13.97452 -13.81107 -13.28834 -13.16010 -12.97497 -12.68747 -12.47992 -12.34235 -12.15582 -11.98054 -11.66956 -11.47947 -11.34520 -10.97593 -10.71064 -10.65340 -10.51884 -10.32413 -10.24721 -10.11761 -9.88565 -9.59077 -9.22071 -9.08033 -8.83510 -8.07410 -6.92497 -5.73266 -3.02925 1.48245 3.43752 3.46821 3.51436 3.52558 3.59485 4.60674 4.66663 4.66794 4.80811 4.94803 5.05491 5.20452 5.34273 5.37970 5.50192 5.55665 5.62577 5.64355 5.64948 5.68221 5.72535 5.83866 5.92734 5.95119 6.02543 6.10353 6.16013 6.19317 6.35397 6.39287 6.51565 6.60716 6.62386 6.68911 6.77345 6.90042 6.95734 7.06476 7.73602 7.99299 8.44607 8.61290 9.55600 10.12095 10.45651 11.48725 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.005152 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.753787 B = 5433.137305 C = 6464.515664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.043 4.043 3 C -0.123 4.123 4 C -0.225 4.225 5 C 0.551 3.449 6 O -0.537 6.537 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.107 4.107 10 H 0.097 0.903 11 C -0.112 4.112 12 C -0.127 4.127 13 C 0.181 3.819 14 H 0.050 0.950 15 N -0.716 5.716 16 C -0.245 4.245 17 H 0.070 0.930 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.120 4.120 25 H 0.082 0.918 26 C 0.128 3.872 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.058 0.942 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.232 13.456 -1.517 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 C -0.180 4.180 4 C -0.246 4.246 5 C 0.343 3.657 6 O -0.416 6.416 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.126 4.126 10 H 0.115 0.885 11 C -0.150 4.150 12 C -0.166 4.166 13 C 0.070 3.930 14 H 0.068 0.932 15 N -0.357 5.357 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.205 4.205 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.142 4.142 25 H 0.100 0.900 26 C 0.007 3.993 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.457 13.364 -1.276 19.008 hybrid contribution -0.422 -0.522 0.656 0.939 sum 13.035 12.842 -0.620 18.309 Atomic orbital electron populations 1.21128 0.90849 1.02400 1.03675 1.22519 0.96963 0.94288 0.90760 1.20973 0.99655 0.94643 1.02702 1.22462 0.99914 0.92183 1.10054 1.18162 0.86562 0.83114 0.77907 1.90792 1.14815 1.86941 1.49091 1.48530 1.09545 1.06574 1.70017 1.22216 0.82455 0.97860 0.99178 1.23184 0.99361 0.94332 0.95723 0.88465 1.22218 0.99239 0.98422 0.95143 1.22360 1.00323 0.95613 0.98280 1.20936 0.86635 0.94993 0.90447 0.93152 1.42616 0.99560 1.48453 1.45054 1.19168 0.90367 1.15302 1.12812 0.91238 1.24732 0.96069 0.99987 0.99666 1.69645 1.02360 1.43716 1.41874 0.86312 0.77926 0.80899 0.81282 1.21278 1.21731 1.21321 1.23834 0.93947 0.97017 0.99408 0.89953 1.21922 0.96585 0.78185 1.02632 0.90475 0.92988 0.88956 0.91632 0.90897 0.90612 0.86060 0.91270 0.92141 0.91649 0.92334 0.91352 0.92137 0.78031 0.93396 0.92405 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.48 36.01 0.31 -1.35 16 2 C -0.04 -0.52 6.11 -101.17 -0.62 -1.14 16 3 C -0.12 -0.99 10.10 36.00 0.36 -0.63 16 4 C -0.23 -3.00 9.02 -37.81 -0.34 -3.34 16 5 C 0.55 9.77 7.65 -12.66 -0.10 9.68 16 6 O -0.54 -11.59 13.61 5.27 0.07 -11.52 16 7 N -0.61 -10.33 2.87 -172.26 -0.49 -10.83 16 8 C 0.11 1.34 5.73 -2.71 -0.02 1.33 16 9 C -0.11 -1.39 4.21 -87.25 -0.37 -1.76 16 10 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.11 -1.54 5.87 -25.39 -0.15 -1.69 16 12 C -0.13 -2.05 6.56 -25.77 -0.17 -2.22 16 13 C 0.18 3.47 3.22 -66.33 -0.21 3.25 16 14 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 15 N -0.72 -17.52 3.57 -51.88 -0.19 -17.71 16 16 C -0.25 -6.71 9.96 -15.06 -0.15 -6.86 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 20 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C -0.12 -2.04 4.10 -87.08 -0.36 -2.40 16 25 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 26 C 0.13 2.55 5.53 -3.17 -0.02 2.54 16 27 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 28 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.09 1.52 6.11 -51.93 -0.32 1.20 16 30 H 0.06 0.46 7.82 -51.92 -0.41 0.05 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 1.29 6.77 -52.48 -0.36 0.93 16 34 H 0.07 0.74 7.14 -51.93 -0.37 0.37 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 1.01 7.37 -51.93 -0.38 0.63 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.22 7.60 -51.93 -0.39 0.83 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.38 10.24 6.85 -40.82 -0.28 9.96 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.09 2.15 6.08 -51.93 -0.32 1.84 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -31.95 337.28 -8.75 -40.71 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.01 Total: 9.19 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.92 Total: -4.92 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.05 Total: -56.17 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.95 -8.75 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.258 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds