Wall clock time and date at job start Tue Mar 31 2020 00:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50699 * 119.99876 * 2 1 4 4 C 1.32991 * 120.00080 * 179.72813 * 2 1 3 5 5 C 1.47097 * 120.00150 * 352.69097 * 4 2 1 6 6 O 1.21613 * 119.99879 * 354.33046 * 5 4 2 7 7 N 1.34781 * 120.00281 * 174.32085 * 5 4 2 8 8 C 1.47355 * 125.70060 * 0.03244 * 7 5 4 9 9 C 1.54653 * 105.13168 * 204.81074 * 8 7 5 10 10 H 1.09004 * 113.79424 * 200.27846 * 9 8 7 11 11 C 1.54451 * 108.63780 * 72.46521 * 9 8 7 12 12 C 1.54110 * 104.73292 * 216.46107 * 11 9 8 13 13 C 1.53725 * 106.66968 * 23.40886 * 12 11 9 14 14 H 1.09002 * 109.91402 * 239.75726 * 13 12 11 15 15 N 1.46495 * 109.91383 * 118.66665 * 13 12 11 16 16 C 1.36940 * 120.00281 * 156.06285 * 15 13 12 17 17 H 1.08002 * 119.99286 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00142 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99723 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47140 * 60.00619 * 20 18 16 22 22 H 1.48508 * 109.46894 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47450 * 300.00387 * 20 18 16 24 24 C 1.55304 * 107.50731 * 358.33309 * 13 12 11 25 25 H 1.08999 * 114.00431 * 216.17593 * 24 13 12 26 26 C 1.47031 * 125.70384 * 179.71494 * 7 5 4 27 27 H 1.09001 * 109.47171 * 265.03573 * 1 2 3 28 28 H 1.08998 * 109.47100 * 25.03708 * 1 2 3 29 29 H 1.08997 * 109.47318 * 145.04059 * 1 2 3 30 30 H 1.09007 * 109.47244 * 179.72851 * 3 2 1 31 31 H 1.09004 * 109.47163 * 299.72562 * 3 2 1 32 32 H 1.08996 * 109.47380 * 59.72643 * 3 2 1 33 33 H 1.08003 * 119.99833 * 172.69692 * 4 2 1 34 34 H 1.09001 * 110.31089 * 323.72535 * 8 7 5 35 35 H 1.08997 * 110.30745 * 85.89632 * 8 7 5 36 36 H 1.08995 * 110.39058 * 335.27449 * 11 9 8 37 37 H 1.09003 * 110.38729 * 97.64827 * 11 9 8 38 38 H 1.08996 * 110.01860 * 142.70729 * 12 11 9 39 39 H 1.08994 * 110.02036 * 264.06326 * 12 11 9 40 40 H 0.97002 * 120.00109 * 336.06209 * 15 13 12 41 41 H 0.97009 * 119.99978 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.82997 * 297.26196 * 26 7 5 43 43 H 1.09003 * 109.82301 * 58.22029 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0055 5 6 1.4455 -2.4197 0.1735 6 8 0.2527 -2.4103 0.4104 7 7 2.1017 -3.5919 0.0649 8 6 3.5394 -3.7497 -0.2173 9 6 3.6738 -5.1513 -0.8570 10 1 4.6819 -5.5628 -0.8066 11 6 3.0945 -5.0984 -2.2878 12 6 2.4111 -6.4656 -2.4847 13 6 2.0823 -7.0004 -1.0814 14 1 2.5865 -7.9531 -0.9196 15 7 0.6344 -7.1719 -0.9395 16 6 0.1365 -8.0582 -0.0220 17 1 0.8114 -8.6305 0.5973 18 6 -1.2355 -8.2203 0.1129 19 7 -2.0579 -7.5225 -0.6414 20 14 -1.9145 -9.4289 1.3650 21 1 -1.4641 -9.0380 2.7250 22 1 -3.3985 -9.4154 1.3117 23 1 -1.4208 -10.7943 1.0535 24 6 2.6113 -5.9655 -0.0513 25 1 3.0127 -6.4112 0.8588 26 6 1.5041 -4.9269 0.2147 27 1 -0.3633 -0.0889 1.0238 28 1 -0.3633 0.9311 -0.4349 29 1 -0.3634 -0.8422 -0.5888 30 1 3.3322 1.1060 0.0049 31 1 2.0008 1.8746 -0.8925 32 1 1.9935 1.8788 0.8875 33 1 3.2454 -1.1560 -0.1134 34 1 3.8745 -2.9818 -0.9146 35 1 4.1142 -3.6991 0.7074 36 1 2.3645 -4.2935 -2.3725 37 1 3.8941 -4.9652 -3.0165 38 1 1.4946 -6.3450 -3.0621 39 1 3.0871 -7.1504 -2.9966 40 1 0.0282 -6.6576 -1.4954 41 1 -3.0167 -7.6361 -0.5474 42 1 1.1166 -5.0472 1.2263 43 1 0.6986 -5.0546 -0.5086 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026182333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:23 Heat of formation + Delta-G solvation = -23.553978 kcal Electronic energy + Delta-G solvation = -22526.569830 eV Core-core repulsion = 19378.337294 eV Total energy + Delta-G solvation = -3148.232535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57902 -39.87331 -36.72071 -36.20346 -34.89680 -32.65801 -30.99459 -29.81725 -28.71249 -28.55844 -26.82247 -25.18766 -24.40110 -21.33307 -20.99494 -20.19944 -19.33462 -18.90023 -18.18361 -17.16772 -16.68356 -16.21697 -16.09203 -15.54286 -15.24283 -14.92733 -14.80790 -14.63248 -14.34261 -13.91100 -13.67497 -13.53026 -13.24706 -13.16917 -13.12726 -12.87171 -12.61491 -12.45852 -12.41922 -12.32812 -12.10891 -11.79499 -11.56623 -11.54810 -11.44324 -11.39628 -10.86334 -10.57215 -10.13437 -9.44484 -8.96845 -7.94280 -5.22138 0.41982 1.43001 1.46671 1.52211 2.16188 2.32409 2.55047 3.36893 3.45239 3.58973 3.81233 3.84486 3.92634 4.19748 4.27431 4.35117 4.41068 4.44016 4.47051 4.54818 4.67709 4.70669 4.75056 4.75990 4.79824 4.81950 4.91022 5.01632 5.05387 5.12490 5.17927 5.20013 5.29230 5.35108 5.46035 5.47896 5.52456 5.57609 5.59868 5.72090 6.27403 6.70764 7.27216 7.32676 8.10806 8.31374 9.29155 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.005152 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.753787 B = 5433.137305 C = 6464.515664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.030 4.030 3 C -0.118 4.118 4 C -0.237 4.237 5 C 0.535 3.465 6 O -0.596 6.596 7 N -0.615 5.615 8 C 0.103 3.897 9 C -0.086 4.086 10 H 0.142 0.858 11 C -0.105 4.105 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.053 0.947 15 N -0.729 5.729 16 C -0.236 4.236 17 H 0.078 0.922 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.968 3.032 21 H -0.282 1.282 22 H -0.300 1.300 23 H -0.272 1.272 24 C -0.116 4.116 25 H 0.089 0.911 26 C 0.139 3.861 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.160 0.840 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.099 0.901 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.368 0.632 41 H 0.248 0.752 42 H 0.014 0.986 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.720 14.920 -1.687 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.032 4.032 3 C -0.174 4.174 4 C -0.257 4.257 5 C 0.329 3.671 6 O -0.479 6.479 7 N -0.347 5.347 8 C -0.019 4.019 9 C -0.105 4.105 10 H 0.160 0.840 11 C -0.143 4.143 12 C -0.161 4.161 13 C 0.060 3.940 14 H 0.071 0.929 15 N -0.368 5.368 16 C -0.368 4.368 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.797 3.203 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.198 1.198 24 C -0.138 4.138 25 H 0.107 0.893 26 C 0.015 3.985 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.178 0.822 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.117 0.883 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.200 0.800 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.058 14.819 -1.446 23.405 hybrid contribution -1.813 -0.928 0.693 2.151 sum 16.245 13.891 -0.754 21.388 Atomic orbital electron populations 1.21063 0.92787 1.02185 1.02263 1.22905 0.96034 0.96139 0.88160 1.21048 1.00210 0.92107 1.04021 1.22491 1.01324 0.89793 1.12134 1.19160 0.86292 0.84787 0.76866 1.90770 1.17555 1.87872 1.51749 1.48627 1.11537 1.05025 1.69500 1.22554 0.79594 0.98530 1.01194 1.23273 0.99774 0.93581 0.93835 0.84011 1.22193 0.99561 0.95654 0.96884 1.22304 0.99986 0.97917 0.95921 1.21308 0.83535 0.95973 0.93154 0.92893 1.42817 1.01889 1.47818 1.44293 1.19601 0.90582 1.14386 1.12186 0.90364 1.25536 0.96707 1.02494 1.02188 1.69831 1.01934 1.46182 1.44307 0.85287 0.76557 0.79353 0.79054 1.20830 1.22646 1.19821 1.23695 0.94489 0.95893 0.99760 0.89301 1.21504 0.96944 0.81513 0.98499 0.92004 0.90076 0.92852 0.89553 0.89205 0.89321 0.82230 0.87933 0.89700 0.94090 0.88294 0.94190 0.89443 0.79968 0.94365 0.96721 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.48 71.24 0.60 -2.85 16 2 C -0.03 -0.67 6.11 -17.62 -0.11 -0.78 16 3 C -0.12 -1.40 10.10 71.24 0.72 -0.68 16 4 C -0.24 -5.85 9.02 23.43 0.21 -5.64 16 5 C 0.53 19.51 7.65 86.57 0.66 20.17 16 6 O -0.60 -27.95 13.61 -4.07 -0.06 -28.00 16 7 N -0.61 -20.76 2.87 -817.15 -2.34 -23.10 16 8 C 0.10 2.19 5.73 86.78 0.50 2.69 16 9 C -0.09 -1.88 4.21 -8.61 -0.04 -1.92 16 10 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 11 C -0.11 -2.56 5.87 31.46 0.18 -2.38 16 12 C -0.12 -3.83 6.56 31.21 0.20 -3.63 16 13 C 0.17 6.47 3.22 46.03 0.15 6.62 16 14 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 15 N -0.73 -37.48 3.57 -318.05 -1.14 -38.62 16 16 C -0.24 -13.35 9.96 84.03 0.84 -12.51 16 17 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 19 N -0.97 -62.97 13.06 21.65 0.28 -62.68 16 20 Si 0.97 48.27 29.55 68.60 2.03 50.29 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 24 C -0.12 -3.88 4.10 -8.50 -0.03 -3.91 16 25 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 26 C 0.14 5.84 5.53 86.65 0.48 6.32 16 27 H 0.06 1.86 8.05 -2.39 -0.02 1.84 16 28 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 29 H 0.05 1.90 6.11 -2.39 -0.01 1.88 16 30 H 0.09 0.73 7.82 -2.38 -0.02 0.71 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.16 2.63 6.77 -2.91 -0.02 2.61 16 34 H 0.10 1.60 7.14 -2.39 -0.02 1.58 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.21 7.37 -2.39 -0.02 1.19 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 1.47 7.60 -2.39 -0.02 1.45 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.37 21.14 6.85 -92.71 -0.64 20.50 16 41 H 0.25 15.73 8.31 -92.70 -0.77 14.96 16 42 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.04 2.28 6.08 -2.39 -0.01 2.27 16 Total: -1.00 -78.92 337.28 3.97 -74.95 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.36 Total: 29.81 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 4.84 Total: -2.65 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -3.20 Total: -124.40 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.06 Total: -28.00 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.29 kcal Total: -78.92 3.97 -74.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.398 kcal (2) G-P(sol) polarization free energy of solvation -78.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds