Wall clock time and date at job start Tue Mar 31 2020 00:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 119.99893 * 2 1 4 4 C 1.32991 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00045 * 5.63945 * 4 2 1 6 6 O 1.21612 * 119.99934 * 354.69801 * 5 4 2 7 7 N 1.34777 * 120.00197 * 174.70159 * 5 4 2 8 8 C 1.48787 * 126.25848 * 0.44922 * 7 5 4 9 9 C 1.53775 * 105.59904 * 149.19801 * 8 7 5 10 10 H 1.09002 * 111.70631 * 255.90934 * 9 8 7 11 11 C 1.54315 * 109.06550 * 131.96234 * 9 8 7 12 12 C 1.55059 * 103.93835 * 221.16647 * 11 9 8 13 13 C 1.55054 * 102.10731 * 40.05334 * 12 11 9 14 14 H 1.08998 * 110.53605 * 78.70334 * 13 12 11 15 15 N 1.46509 * 110.53237 * 201.33391 * 13 12 11 16 16 C 1.36941 * 119.99673 * 273.54599 * 15 13 12 17 17 H 1.08002 * 119.99957 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99764 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99943 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00038 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47029 * 270.00071 * 20 18 16 22 22 H 1.48501 * 109.46761 * 150.00040 * 20 18 16 23 23 H 1.48500 * 109.47109 * 30.00274 * 20 18 16 24 24 C 1.54323 * 103.93819 * 319.94526 * 13 12 11 25 25 H 1.09007 * 111.68888 * 262.79292 * 24 13 12 26 26 C 1.47214 * 126.70594 * 179.97438 * 7 5 4 27 27 H 1.09002 * 109.46985 * 238.12056 * 1 2 3 28 28 H 1.09006 * 109.47104 * 358.12233 * 1 2 3 29 29 H 1.08997 * 109.46884 * 118.11974 * 1 2 3 30 30 H 1.08999 * 109.47235 * 269.99833 * 3 2 1 31 31 H 1.09000 * 109.47351 * 30.00279 * 3 2 1 32 32 H 1.09001 * 109.47104 * 149.99482 * 3 2 1 33 33 H 1.08008 * 120.00071 * 185.63673 * 4 2 1 34 34 H 1.08997 * 110.84287 * 30.01254 * 8 7 5 35 35 H 1.08995 * 110.05820 * 267.96813 * 8 7 5 36 36 H 1.09005 * 110.53805 * 102.54959 * 11 9 8 37 37 H 1.09001 * 110.53244 * 339.77150 * 11 9 8 38 38 H 1.09007 * 110.90299 * 281.85238 * 12 11 9 39 39 H 1.08993 * 110.93632 * 158.27502 * 12 11 9 40 40 H 0.96992 * 120.00200 * 93.55068 * 15 13 12 41 41 H 0.96995 * 120.00428 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.07449 * 92.01211 * 26 7 5 43 43 H 1.09004 * 110.11790 * 330.49431 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4419 -2.4225 -0.1263 6 8 0.2258 -2.4270 -0.1327 7 7 2.1206 -3.5818 -0.2343 8 6 3.6002 -3.7388 -0.2326 9 6 3.8691 -5.1166 0.3950 10 1 4.2250 -5.0295 1.4216 11 6 4.8692 -5.8879 -0.4917 12 6 4.3138 -7.3354 -0.5092 13 6 2.7856 -7.0961 -0.6172 14 1 2.5081 -6.8537 -1.6431 15 7 2.0470 -8.2723 -0.1508 16 6 1.7738 -9.2971 -1.0170 17 1 2.1031 -9.2384 -2.0440 18 6 1.0736 -10.4112 -0.5752 19 7 0.8114 -11.3964 -1.4077 20 14 0.5047 -10.5129 1.2011 21 1 1.5598 -11.1586 2.0226 22 1 -0.7421 -11.3161 1.2763 23 1 0.2439 -9.1448 1.7165 24 6 2.5311 -5.8925 0.3145 25 1 2.1881 -6.2107 1.2991 26 6 1.5441 -4.9300 -0.3662 27 1 -0.3633 -0.5428 0.8727 28 1 -0.3633 1.0272 0.0337 29 1 -0.3633 -0.4843 -0.9064 30 1 2.4422 1.6198 -1.0276 31 1 1.6714 2.0648 0.5139 32 1 3.2129 1.1748 0.5139 33 1 3.2481 -1.1540 0.0914 34 1 4.0723 -2.9577 0.3633 35 1 3.9801 -3.7122 -1.2538 36 1 5.8663 -5.8662 -0.0516 37 1 4.8859 -5.4726 -1.4994 38 1 4.5612 -7.8582 0.4147 39 1 4.6837 -7.8841 -1.3753 40 1 1.7516 -8.3251 0.7715 41 1 0.3225 -12.1751 -1.0989 42 1 1.4353 -5.1890 -1.4194 43 1 0.5753 -4.9738 0.1316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026182334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:29 Heat of formation + Delta-G solvation = -9.797801 kcal Electronic energy + Delta-G solvation = -21924.291118 eV Core-core repulsion = 18776.655095 eV Total energy + Delta-G solvation = -3147.636023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.33844 -38.76579 -35.71929 -35.08396 -33.39730 -31.25916 -30.13847 -28.79746 -28.08537 -27.60672 -25.21770 -23.63485 -22.50625 -20.66491 -19.90281 -19.34334 -18.11685 -17.42508 -17.27077 -15.82644 -15.39809 -15.21457 -14.50623 -14.35326 -14.18379 -13.93304 -13.79900 -13.34764 -12.90621 -12.76797 -12.69721 -12.44399 -12.30630 -12.24696 -11.93421 -11.87785 -11.66589 -11.30533 -10.89880 -10.82096 -10.71385 -10.43971 -10.39542 -10.31106 -9.98463 -9.58721 -9.52871 -9.33280 -8.89592 -8.53045 -7.25778 -5.77029 -3.12690 1.24964 3.06597 3.29149 3.38242 3.41134 3.46295 4.34076 4.54206 4.59445 4.60801 4.70898 4.80892 4.96551 5.17624 5.21088 5.23166 5.29210 5.41154 5.45270 5.51852 5.54174 5.55571 5.65331 5.73197 5.79071 5.81433 5.87877 5.94871 5.98404 6.12596 6.15355 6.22908 6.27122 6.33343 6.40295 6.47747 6.57109 6.73044 6.92578 7.62652 7.99113 8.26581 8.42290 9.20365 9.93047 10.12298 11.41332 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.003953 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.636267 B = 7081.215112 C = 7774.838595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.125 4.125 4 C -0.230 4.230 5 C 0.558 3.442 6 O -0.545 6.545 7 N -0.617 5.617 8 C 0.107 3.893 9 C -0.101 4.101 10 H 0.085 0.915 11 C -0.117 4.117 12 C -0.142 4.142 13 C 0.189 3.811 14 H 0.064 0.936 15 N -0.745 5.745 16 C -0.243 4.243 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.108 4.108 25 H 0.086 0.914 26 C 0.117 3.883 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.073 0.927 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.029 23.508 3.944 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.040 4.040 3 C -0.182 4.182 4 C -0.251 4.251 5 C 0.350 3.650 6 O -0.425 6.425 7 N -0.350 5.350 8 C -0.015 4.015 9 C -0.120 4.120 10 H 0.103 0.897 11 C -0.155 4.155 12 C -0.182 4.182 13 C 0.078 3.922 14 H 0.082 0.918 15 N -0.387 5.387 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.582 5.582 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.128 4.128 25 H 0.104 0.896 26 C -0.005 4.005 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.277 23.414 3.724 24.800 hybrid contribution -0.230 -0.362 1.299 1.368 sum 7.047 23.052 5.023 24.623 Atomic orbital electron populations 1.21044 0.90776 1.00918 1.04520 1.22570 0.96963 0.94395 0.90077 1.21008 0.99991 0.94308 1.02854 1.22378 1.00060 0.91875 1.10777 1.18202 0.86815 0.83211 0.76736 1.90782 1.13567 1.86769 1.51414 1.48913 1.07450 1.06422 1.72261 1.22593 0.80426 0.97610 1.00907 1.22557 0.96181 0.93507 0.99801 0.89705 1.22516 0.97402 0.96836 0.98789 1.23251 0.98574 0.94370 1.02029 1.21231 0.90179 0.85147 0.95599 0.91792 1.42803 1.66860 1.18707 1.10330 1.19062 1.29624 0.94678 0.93938 0.89186 1.24667 1.00501 0.96636 0.97266 1.69695 1.45605 1.08735 1.34118 0.86564 0.78370 0.77349 0.86345 1.21132 1.21753 1.20296 1.22891 0.93784 0.95796 1.00366 0.89566 1.22109 0.97603 0.79781 1.01041 0.89989 0.93051 0.89846 0.90288 0.91077 0.91229 0.85816 0.90797 0.90947 0.92033 0.91481 0.91624 0.91648 0.80584 0.93055 0.90869 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.34 36.01 0.30 -0.94 16 2 C -0.04 -0.37 6.11 -101.17 -0.62 -0.99 16 3 C -0.13 -0.78 9.99 36.01 0.36 -0.42 16 4 C -0.23 -2.51 9.11 -37.81 -0.34 -2.85 16 5 C 0.56 8.14 7.79 -12.67 -0.10 8.04 16 6 O -0.55 -9.62 13.34 5.27 0.07 -9.55 16 7 N -0.62 -8.55 3.35 -171.70 -0.58 -9.12 16 8 C 0.11 1.14 6.38 -2.37 -0.02 1.13 16 9 C -0.10 -1.19 3.85 -88.54 -0.34 -1.53 16 10 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.12 -1.38 6.34 -24.95 -0.16 -1.54 16 12 C -0.14 -2.26 6.60 -24.56 -0.16 -2.42 16 13 C 0.19 3.44 3.01 -66.15 -0.20 3.24 16 14 H 0.06 1.23 7.17 -51.93 -0.37 0.86 16 15 N -0.75 -17.17 5.04 -51.70 -0.26 -17.43 16 16 C -0.24 -6.75 10.46 -15.06 -0.16 -6.91 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 20 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 24 C -0.11 -1.65 3.60 -88.55 -0.32 -1.96 16 25 H 0.09 1.37 7.78 -51.92 -0.40 0.97 16 26 C 0.12 1.84 6.56 -3.26 -0.02 1.82 16 27 H 0.08 1.01 7.31 -51.93 -0.38 0.63 16 28 H 0.05 0.42 7.93 -51.93 -0.41 0.01 16 29 H 0.08 1.04 7.15 -51.93 -0.37 0.67 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.37 8.03 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.12 1.05 6.73 -52.48 -0.35 0.70 16 34 H 0.07 0.62 6.88 -51.93 -0.36 0.27 16 35 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.74 7.20 -51.93 -0.37 0.36 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.36 8.25 5.43 -40.82 -0.22 8.03 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.07 1.20 7.13 -51.93 -0.37 0.83 16 43 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -32.64 336.72 -8.44 -41.08 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.94 Total: 6.35 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.87 Total: -5.29 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.06 Total: -55.09 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.64 -8.44 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.279 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds