Wall clock time and date at job start Tue Mar 31 2020 00:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50703 * 119.99893 * 2 1 4 4 C 1.32991 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.47096 * 120.00045 * 5.63945 * 4 2 1 6 6 O 1.21612 * 119.99934 * 354.69801 * 5 4 2 7 7 N 1.34777 * 120.00197 * 174.70159 * 5 4 2 8 8 C 1.48787 * 126.25848 * 0.44922 * 7 5 4 9 9 C 1.53775 * 105.59904 * 149.19801 * 8 7 5 10 10 H 1.09002 * 111.70631 * 255.90934 * 9 8 7 11 11 C 1.54315 * 109.06550 * 131.96234 * 9 8 7 12 12 C 1.55059 * 103.93835 * 221.16647 * 11 9 8 13 13 C 1.55054 * 102.10731 * 40.05334 * 12 11 9 14 14 H 1.08998 * 110.53605 * 78.70334 * 13 12 11 15 15 N 1.46509 * 110.53237 * 201.33391 * 13 12 11 16 16 C 1.36941 * 119.99673 * 273.54599 * 15 13 12 17 17 H 1.08002 * 119.99957 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99764 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99943 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00038 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47029 * 270.00071 * 20 18 16 22 22 H 1.48501 * 109.46761 * 150.00040 * 20 18 16 23 23 H 1.48500 * 109.47109 * 30.00274 * 20 18 16 24 24 C 1.54323 * 103.93819 * 319.94526 * 13 12 11 25 25 H 1.09007 * 111.68888 * 262.79292 * 24 13 12 26 26 C 1.47214 * 126.70594 * 179.97438 * 7 5 4 27 27 H 1.09002 * 109.46985 * 238.12056 * 1 2 3 28 28 H 1.09006 * 109.47104 * 358.12233 * 1 2 3 29 29 H 1.08997 * 109.46884 * 118.11974 * 1 2 3 30 30 H 1.08999 * 109.47235 * 269.99833 * 3 2 1 31 31 H 1.09000 * 109.47351 * 30.00279 * 3 2 1 32 32 H 1.09001 * 109.47104 * 149.99482 * 3 2 1 33 33 H 1.08008 * 120.00071 * 185.63673 * 4 2 1 34 34 H 1.08997 * 110.84287 * 30.01254 * 8 7 5 35 35 H 1.08995 * 110.05820 * 267.96813 * 8 7 5 36 36 H 1.09005 * 110.53805 * 102.54959 * 11 9 8 37 37 H 1.09001 * 110.53244 * 339.77150 * 11 9 8 38 38 H 1.09007 * 110.90299 * 281.85238 * 12 11 9 39 39 H 1.08993 * 110.93632 * 158.27502 * 12 11 9 40 40 H 0.96992 * 120.00200 * 93.55068 * 15 13 12 41 41 H 0.96995 * 120.00428 * 179.97438 * 19 18 16 42 42 H 1.08999 * 110.07449 * 92.01211 * 26 7 5 43 43 H 1.09004 * 110.11790 * 330.49431 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4419 -2.4225 -0.1263 6 8 0.2258 -2.4270 -0.1327 7 7 2.1206 -3.5818 -0.2343 8 6 3.6002 -3.7388 -0.2326 9 6 3.8691 -5.1166 0.3950 10 1 4.2250 -5.0295 1.4216 11 6 4.8692 -5.8879 -0.4917 12 6 4.3138 -7.3354 -0.5092 13 6 2.7856 -7.0961 -0.6172 14 1 2.5081 -6.8537 -1.6431 15 7 2.0470 -8.2723 -0.1508 16 6 1.7738 -9.2971 -1.0170 17 1 2.1031 -9.2384 -2.0440 18 6 1.0736 -10.4112 -0.5752 19 7 0.8114 -11.3964 -1.4077 20 14 0.5047 -10.5129 1.2011 21 1 1.5598 -11.1586 2.0226 22 1 -0.7421 -11.3161 1.2763 23 1 0.2439 -9.1448 1.7165 24 6 2.5311 -5.8925 0.3145 25 1 2.1881 -6.2107 1.2991 26 6 1.5441 -4.9300 -0.3662 27 1 -0.3633 -0.5428 0.8727 28 1 -0.3633 1.0272 0.0337 29 1 -0.3633 -0.4843 -0.9064 30 1 2.4422 1.6198 -1.0276 31 1 1.6714 2.0648 0.5139 32 1 3.2129 1.1748 0.5139 33 1 3.2481 -1.1540 0.0914 34 1 4.0723 -2.9577 0.3633 35 1 3.9801 -3.7122 -1.2538 36 1 5.8663 -5.8662 -0.0516 37 1 4.8859 -5.4726 -1.4994 38 1 4.5612 -7.8582 0.4147 39 1 4.6837 -7.8841 -1.3753 40 1 1.7516 -8.3251 0.7715 41 1 0.3225 -12.1751 -1.0989 42 1 1.4353 -5.1890 -1.4194 43 1 0.5753 -4.9738 0.1316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026182334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:28 Heat of formation + Delta-G solvation = -30.837938 kcal Electronic energy + Delta-G solvation = -21925.203487 eV Core-core repulsion = 18776.655095 eV Total energy + Delta-G solvation = -3148.548391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45734 -39.91223 -36.89365 -36.22897 -35.01426 -33.12392 -31.37468 -30.09857 -28.72403 -28.52575 -26.70914 -24.71010 -24.29619 -21.80507 -21.12016 -20.63122 -19.52191 -18.83003 -18.32308 -17.18895 -16.66187 -16.37802 -15.99783 -15.52254 -15.20128 -15.15026 -14.77934 -14.69959 -14.44371 -14.03692 -13.75534 -13.70517 -13.29441 -13.20245 -13.17250 -13.04716 -12.61397 -12.55555 -12.43400 -12.22263 -12.13299 -11.91267 -11.82849 -11.56839 -11.50359 -11.39843 -10.95335 -10.59930 -10.18560 -9.58125 -9.28158 -8.03210 -5.35692 0.40863 1.35848 1.38943 1.45918 2.02692 2.28308 2.47072 3.24367 3.35617 3.46703 3.63720 3.82078 3.86833 3.92945 4.17324 4.22667 4.36876 4.46290 4.47324 4.54763 4.58490 4.60823 4.69788 4.73657 4.81277 4.82843 4.91511 4.93262 5.00509 5.01809 5.07479 5.17579 5.21925 5.29985 5.38412 5.46380 5.53093 5.56296 5.67670 5.77466 6.21748 6.59655 7.07509 7.18929 7.84760 8.02528 9.18635 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025411 B = 0.003953 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.636267 B = 7081.215112 C = 7774.838595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.121 4.121 4 C -0.242 4.242 5 C 0.545 3.455 6 O -0.591 6.591 7 N -0.619 5.619 8 C 0.107 3.893 9 C -0.091 4.091 10 H 0.108 0.892 11 C -0.102 4.102 12 C -0.139 4.139 13 C 0.177 3.823 14 H 0.046 0.954 15 N -0.750 5.750 16 C -0.225 4.225 17 H 0.057 0.943 18 C -0.065 4.065 19 N -0.985 5.985 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.256 1.256 24 C -0.101 4.101 25 H 0.081 0.919 26 C 0.119 3.881 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.157 0.843 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.057 0.943 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 26.900 5.826 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 C -0.177 4.177 4 C -0.262 4.262 5 C 0.340 3.660 6 O -0.475 6.475 7 N -0.351 5.351 8 C -0.014 4.014 9 C -0.110 4.110 10 H 0.126 0.874 11 C -0.140 4.140 12 C -0.179 4.179 13 C 0.069 3.931 14 H 0.064 0.936 15 N -0.393 5.393 16 C -0.356 4.356 17 H 0.075 0.925 18 C -0.257 4.257 19 N -0.636 5.636 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.181 1.181 24 C -0.121 4.121 25 H 0.099 0.901 26 C -0.004 4.004 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.175 0.825 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.960 26.869 5.616 29.201 hybrid contribution -1.074 -1.351 0.596 1.826 sum 8.887 25.518 6.212 27.726 Atomic orbital electron populations 1.20994 0.92293 1.01819 1.02306 1.22919 0.96277 0.95969 0.87864 1.21078 1.00389 0.92188 1.04071 1.22443 1.01348 0.89937 1.12504 1.19010 0.86640 0.84483 0.75892 1.90763 1.15720 1.87473 1.53520 1.48995 1.08988 1.05280 1.71849 1.22830 0.78267 0.97854 1.02412 1.22579 0.93636 0.93436 1.01350 0.87381 1.22464 0.98547 0.93114 0.99887 1.23105 0.96344 0.97467 1.01020 1.21493 0.91404 0.84751 0.95463 0.93554 1.42830 1.67619 1.19045 1.09787 1.19018 1.27789 0.95605 0.93184 0.92541 1.25473 1.01673 0.96536 1.01982 1.69876 1.47533 1.09698 1.36527 0.85431 0.77480 0.78146 0.80856 1.20162 1.22527 1.18087 1.22735 0.96054 0.94482 0.98863 0.90068 1.21878 0.96970 0.81783 0.99795 0.92220 0.90435 0.92320 0.88940 0.89902 0.89455 0.82526 0.87156 0.89613 0.88990 0.90361 0.92121 0.93302 0.80274 0.93423 0.92458 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.34 71.24 0.59 -1.86 16 2 C -0.03 -0.48 6.11 -17.62 -0.11 -0.58 16 3 C -0.12 -0.99 9.99 71.24 0.71 -0.27 16 4 C -0.24 -4.58 9.11 23.43 0.21 -4.37 16 5 C 0.55 15.49 7.79 86.57 0.67 16.16 16 6 O -0.59 -21.62 13.34 -4.07 -0.05 -21.68 16 7 N -0.62 -16.27 3.35 -815.40 -2.73 -19.00 16 8 C 0.11 1.85 6.38 86.20 0.55 2.40 16 9 C -0.09 -1.80 3.85 -9.45 -0.04 -1.84 16 10 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 11 C -0.10 -2.02 6.34 31.75 0.20 -1.82 16 12 C -0.14 -4.27 6.60 32.00 0.21 -4.06 16 13 C 0.18 6.49 3.01 46.14 0.14 6.63 16 14 H 0.05 1.85 7.17 -2.39 -0.02 1.84 16 15 N -0.75 -35.02 5.04 -317.48 -1.60 -36.62 16 16 C -0.22 -12.92 10.46 84.03 0.88 -12.04 16 17 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 19 N -0.99 -64.26 13.97 21.65 0.30 -63.96 16 20 Si 0.95 46.56 27.74 68.60 1.90 48.47 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 23 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 24 C -0.10 -2.97 3.60 -9.45 -0.03 -3.01 16 25 H 0.08 2.50 7.78 -2.38 -0.02 2.48 16 26 C 0.12 3.80 6.56 86.50 0.57 4.37 16 27 H 0.06 1.51 7.31 -2.39 -0.02 1.49 16 28 H 0.08 1.14 7.93 -2.38 -0.02 1.12 16 29 H 0.06 1.52 7.15 -2.39 -0.02 1.50 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.52 8.03 -2.39 -0.02 0.50 16 32 H 0.09 0.46 8.06 -2.39 -0.02 0.45 16 33 H 0.16 1.85 6.73 -2.91 -0.02 1.83 16 34 H 0.11 1.18 6.88 -2.39 -0.02 1.17 16 35 H 0.09 1.30 7.13 -2.39 -0.02 1.29 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.08 1.42 7.20 -2.39 -0.02 1.40 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.36 16.46 5.43 -92.71 -0.50 15.96 16 41 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.06 1.98 7.13 -2.39 -0.02 1.96 16 43 H 0.05 1.86 7.92 -2.39 -0.02 1.84 16 Total: -1.00 -76.29 336.72 3.28 -73.01 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.43 Total: 23.53 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.03 Total: -3.75 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -4.03 Total: -119.58 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.90 Total: 48.47 kcal Total: -76.29 3.28 -73.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026182334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.173 kcal (2) G-P(sol) polarization free energy of solvation -76.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds