Wall clock time and date at job start Tue Mar 31 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 H 1.09000 * 115.55691 * 29.31063 * 3 2 1 5 5 C 1.53073 * 117.49476 * 243.60737 * 3 2 1 6 6 C 1.52994 * 117.49964 * 175.00292 * 3 2 1 7 7 H 1.08996 * 117.50105 * 359.96952 * 6 3 2 8 8 C 1.50709 * 117.49736 * 214.98063 * 6 3 2 9 9 O 1.21284 * 119.99645 * 0.08676 * 8 6 3 10 10 N 1.34766 * 119.99985 * 180.08483 * 8 6 3 11 11 C 1.47168 * 120.70944 * 179.97438 * 10 8 6 12 12 C 1.53885 * 108.03018 * 132.75936 * 11 10 8 13 13 H 1.08994 * 112.57933 * 182.22317 * 12 11 10 14 14 C 1.54136 * 107.70959 * 306.32252 * 12 11 10 15 15 C 1.54282 * 104.88933 * 89.41282 * 14 12 11 16 16 C 1.54543 * 104.84916 * 359.80770 * 15 14 12 17 17 H 1.09001 * 112.18661 * 146.40663 * 16 15 14 18 18 C 1.47980 * 120.64451 * 359.70408 * 10 8 6 19 19 N 1.48306 * 107.21087 * 58.35869 * 12 11 10 20 20 C 1.36943 * 128.07355 * 106.70300 * 19 12 11 21 21 H 1.07998 * 119.99288 * 164.89809 * 20 19 12 22 22 C 1.38810 * 119.99881 * 344.89526 * 20 19 12 23 23 N 1.31620 * 120.00381 * 350.76525 * 22 20 19 24 24 Si 1.86798 * 119.99572 * 170.76583 * 22 20 19 25 25 H 1.48506 * 109.47099 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47093 * 299.99909 * 24 22 20 27 27 H 1.48503 * 109.47293 * 60.00159 * 24 22 20 28 28 H 1.09004 * 109.47114 * 59.99745 * 1 2 3 29 29 H 1.08995 * 109.46959 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46728 * 299.99930 * 1 2 3 31 31 H 1.08998 * 109.46993 * 240.00372 * 2 1 3 32 32 H 1.08994 * 109.47112 * 120.00243 * 2 1 3 33 33 H 1.08994 * 117.51192 * 145.03674 * 5 3 2 34 34 H 1.08998 * 117.51504 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.74601 * 13.11920 * 11 10 8 36 36 H 1.09004 * 109.78759 * 252.41237 * 11 10 8 37 37 H 1.08996 * 110.50433 * 330.47988 * 14 12 11 38 38 H 1.08998 * 110.27466 * 208.23260 * 14 12 11 39 39 H 1.08997 * 110.36480 * 240.96615 * 15 14 12 40 40 H 1.08996 * 110.45511 * 118.69702 * 15 14 12 41 41 H 1.09005 * 109.69212 * 107.67106 * 18 10 8 42 42 H 1.08992 * 109.93295 * 346.86438 * 18 10 8 43 43 H 0.96998 * 119.99896 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8447 1.9076 -1.2163 6 6 3.5502 1.6579 0.1182 7 1 4.1803 0.7720 0.1965 8 6 4.0229 2.8620 0.8914 9 8 3.2158 3.6158 1.3928 10 7 5.3424 3.1012 1.0257 11 6 5.8213 4.2726 1.7769 12 6 6.9297 3.8031 2.7355 13 1 7.3127 4.6103 3.3598 14 6 6.3630 2.6404 3.5739 15 6 6.6796 1.3709 2.7563 16 6 7.4063 1.8846 1.4928 17 1 8.1639 1.1846 1.1406 18 6 6.3395 2.1873 0.4253 19 7 7.9921 3.1825 1.9076 20 6 9.2279 3.6874 1.6023 21 1 9.9911 3.0390 1.1979 22 6 9.4994 5.0323 1.8125 23 7 8.5255 5.8585 2.1308 24 14 11.2472 5.6697 1.6437 25 1 11.2704 7.1291 1.9175 26 1 12.1252 4.9702 2.6158 27 1 11.7354 5.4165 0.2643 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.7225 2.9427 -1.5350 34 1 3.0110 1.1858 -2.0160 35 1 4.9995 4.7053 2.3474 36 1 6.2215 5.0152 1.0866 37 1 5.2861 2.7508 3.7010 38 1 6.8566 2.5992 4.5448 39 1 5.7584 0.8572 2.4815 40 1 7.3298 0.7049 3.3235 41 1 6.8052 2.6664 -0.4359 42 1 5.8555 1.2613 0.1152 43 1 8.7154 6.7982 2.2780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029482103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:05 Heat of formation + Delta-G solvation = 17.671704 kcal Electronic energy + Delta-G solvation = -22920.451561 eV Core-core repulsion = 19774.006705 eV Total energy + Delta-G solvation = -3146.444855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12419 -38.41970 -36.55759 -33.66525 -32.36517 -32.07537 -30.59260 -29.27844 -26.49920 -24.61145 -23.86762 -23.75721 -22.69548 -20.52931 -19.74192 -19.38456 -18.36316 -17.21914 -16.13949 -15.48895 -15.32761 -14.74359 -14.55116 -14.38745 -13.83543 -13.50719 -13.44292 -12.99317 -12.75013 -12.53753 -12.24321 -12.10774 -11.83678 -11.66327 -11.59900 -11.37490 -11.09086 -11.00816 -10.86787 -10.80547 -10.34153 -10.19437 -10.05303 -9.94567 -9.85265 -9.64744 -9.53551 -9.18123 -8.76732 -8.00897 -6.84297 -5.84219 -3.20084 2.96149 3.35521 3.40858 3.41853 3.56881 3.98055 4.40629 4.61177 4.82733 4.87438 5.08433 5.13025 5.23681 5.31795 5.32313 5.39427 5.61127 5.63827 5.68302 5.74716 5.76708 5.83506 5.86446 5.95808 5.97375 6.04240 6.06013 6.24388 6.34553 6.37332 6.43624 6.53898 6.66579 6.72153 6.81025 6.88920 7.01921 7.31693 7.50221 7.69931 8.12584 8.15064 8.77889 9.04937 9.67287 10.43956 11.28576 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.004482 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.483957 B = 6246.166385 C = 6331.269247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.122 4.122 4 H 0.115 0.885 5 C -0.150 4.150 6 C -0.185 4.185 7 H 0.121 0.879 8 C 0.534 3.466 9 O -0.562 6.562 10 N -0.588 5.588 11 C 0.112 3.888 12 C 0.168 3.832 13 H 0.118 0.882 14 C -0.137 4.137 15 C -0.123 4.123 16 C 0.132 3.868 17 H 0.078 0.922 18 C 0.097 3.903 19 N -0.584 5.584 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.913 5.913 24 Si 0.913 3.087 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 -11.158 -4.041 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.141 4.141 4 H 0.133 0.867 5 C -0.188 4.188 6 C -0.206 4.206 7 H 0.138 0.862 8 C 0.322 3.678 9 O -0.442 6.442 10 N -0.318 5.318 11 C -0.011 4.011 12 C 0.061 3.939 13 H 0.136 0.864 14 C -0.176 4.176 15 C -0.162 4.162 16 C 0.024 3.976 17 H 0.096 0.904 18 C -0.028 4.028 19 N -0.306 5.306 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.558 5.558 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.983 -10.493 -3.776 14.967 hybrid contribution 1.052 0.369 -0.199 1.133 sum -8.931 -10.123 -3.976 14.073 Atomic orbital electron populations 1.21736 0.95396 1.01367 1.02096 1.21137 0.96054 0.93938 1.01974 1.22442 0.92071 0.98284 1.01294 0.86651 1.23048 1.02507 1.02854 0.90371 1.22353 0.96812 0.99635 1.01753 0.86162 1.19527 0.82370 0.85495 0.80441 1.90625 1.53697 1.49566 1.50361 1.48331 1.04410 1.26830 1.52277 1.22421 0.96823 0.86203 0.95635 1.21800 0.86582 0.94608 0.90924 0.86441 1.22574 0.99361 0.96953 0.98697 1.22480 0.98760 0.97388 0.97567 1.21976 0.92768 0.90412 0.92484 0.90372 1.22685 0.90628 0.92265 0.97268 1.45161 1.13796 1.15941 1.55666 1.18948 0.86644 0.91898 1.38198 0.90624 1.24839 0.97721 0.95522 1.01876 1.69834 1.29834 1.03470 1.52700 0.86204 0.83922 0.77728 0.77872 1.21599 1.21180 1.21113 0.92615 0.92821 0.92531 0.91824 0.91523 0.88541 0.88186 0.91411 0.90361 0.92842 0.92886 0.93033 0.92687 0.91646 0.91450 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.87 37.16 0.37 -0.90 16 2 C -0.09 -0.90 6.22 -26.73 -0.17 -1.07 16 3 C -0.12 -1.52 5.25 -90.58 -0.48 -1.99 16 4 H 0.12 1.65 7.60 -51.93 -0.39 1.25 16 5 C -0.15 -1.81 9.88 -26.69 -0.26 -2.07 16 6 C -0.18 -2.60 4.93 -91.77 -0.45 -3.05 16 7 H 0.12 1.49 6.48 -51.93 -0.34 1.16 16 8 C 0.53 10.02 7.49 -10.99 -0.08 9.93 16 9 O -0.56 -12.36 15.72 5.55 0.09 -12.27 16 10 N -0.59 -11.46 2.28 -170.84 -0.39 -11.85 16 11 C 0.11 2.53 5.81 -3.22 -0.02 2.51 16 12 C 0.17 3.87 3.10 -65.88 -0.20 3.66 16 13 H 0.12 3.06 6.37 -51.93 -0.33 2.73 16 14 C -0.14 -2.70 6.16 -25.47 -0.16 -2.85 16 15 C -0.12 -2.16 6.19 -25.25 -0.16 -2.31 16 16 C 0.13 2.53 4.32 -65.64 -0.28 2.24 16 17 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 18 C 0.10 1.70 5.83 -2.75 -0.02 1.68 16 19 N -0.58 -13.86 2.81 -152.82 -0.43 -14.29 16 20 C -0.23 -5.97 10.37 -15.06 -0.16 -6.12 16 21 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 22 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 23 N -0.91 -25.19 10.42 55.49 0.58 -24.61 16 24 Si 0.91 21.20 29.56 -169.99 -5.03 16.17 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 35 H 0.07 1.56 7.11 -51.93 -0.37 1.19 16 36 H 0.08 2.00 7.83 -51.93 -0.41 1.59 16 37 H 0.05 1.05 7.83 -51.93 -0.41 0.64 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.82 7.84 -51.93 -0.41 0.42 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.07 0.95 5.64 -51.93 -0.29 0.66 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -29.25 334.97 -9.41 -38.66 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.12 Total: 3.65 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.16 Total: -0.50 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.24 Total: -50.75 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.25 -9.41 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029482103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.328 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds