Wall clock time and date at job start Tue Mar 31 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47332 * 2 1 4 4 H 1.09000 * 115.55691 * 29.31063 * 3 2 1 5 5 C 1.53073 * 117.49476 * 243.60737 * 3 2 1 6 6 C 1.52994 * 117.49964 * 175.00292 * 3 2 1 7 7 H 1.08996 * 117.50105 * 359.96952 * 6 3 2 8 8 C 1.50709 * 117.49736 * 214.98063 * 6 3 2 9 9 O 1.21284 * 119.99645 * 0.08676 * 8 6 3 10 10 N 1.34766 * 119.99985 * 180.08483 * 8 6 3 11 11 C 1.47168 * 120.70944 * 179.97438 * 10 8 6 12 12 C 1.53885 * 108.03018 * 132.75936 * 11 10 8 13 13 H 1.08994 * 112.57933 * 182.22317 * 12 11 10 14 14 C 1.54136 * 107.70959 * 306.32252 * 12 11 10 15 15 C 1.54282 * 104.88933 * 89.41282 * 14 12 11 16 16 C 1.54543 * 104.84916 * 359.80770 * 15 14 12 17 17 H 1.09001 * 112.18661 * 146.40663 * 16 15 14 18 18 C 1.47980 * 120.64451 * 359.70408 * 10 8 6 19 19 N 1.48306 * 107.21087 * 58.35869 * 12 11 10 20 20 C 1.36943 * 128.07355 * 106.70300 * 19 12 11 21 21 H 1.07998 * 119.99288 * 164.89809 * 20 19 12 22 22 C 1.38810 * 119.99881 * 344.89526 * 20 19 12 23 23 N 1.31620 * 120.00381 * 350.76525 * 22 20 19 24 24 Si 1.86798 * 119.99572 * 170.76583 * 22 20 19 25 25 H 1.48506 * 109.47099 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47093 * 299.99909 * 24 22 20 27 27 H 1.48503 * 109.47293 * 60.00159 * 24 22 20 28 28 H 1.09004 * 109.47114 * 59.99745 * 1 2 3 29 29 H 1.08995 * 109.46959 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46728 * 299.99930 * 1 2 3 31 31 H 1.08998 * 109.46993 * 240.00372 * 2 1 3 32 32 H 1.08994 * 109.47112 * 120.00243 * 2 1 3 33 33 H 1.08994 * 117.51192 * 145.03674 * 5 3 2 34 34 H 1.08998 * 117.51504 * 359.97438 * 5 3 2 35 35 H 1.08998 * 109.74601 * 13.11920 * 11 10 8 36 36 H 1.09004 * 109.78759 * 252.41237 * 11 10 8 37 37 H 1.08996 * 110.50433 * 330.47988 * 14 12 11 38 38 H 1.08998 * 110.27466 * 208.23260 * 14 12 11 39 39 H 1.08997 * 110.36480 * 240.96615 * 15 14 12 40 40 H 1.08996 * 110.45511 * 118.69702 * 15 14 12 41 41 H 1.09005 * 109.69212 * 107.67106 * 18 10 8 42 42 H 1.08992 * 109.93295 * 346.86438 * 18 10 8 43 43 H 0.96998 * 119.99896 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8447 1.9076 -1.2163 6 6 3.5502 1.6579 0.1182 7 1 4.1803 0.7720 0.1965 8 6 4.0229 2.8620 0.8914 9 8 3.2158 3.6158 1.3928 10 7 5.3424 3.1012 1.0257 11 6 5.8213 4.2726 1.7769 12 6 6.9297 3.8031 2.7355 13 1 7.3127 4.6103 3.3598 14 6 6.3630 2.6404 3.5739 15 6 6.6796 1.3709 2.7563 16 6 7.4063 1.8846 1.4928 17 1 8.1639 1.1846 1.1406 18 6 6.3395 2.1873 0.4253 19 7 7.9921 3.1825 1.9076 20 6 9.2279 3.6874 1.6023 21 1 9.9911 3.0390 1.1979 22 6 9.4994 5.0323 1.8125 23 7 8.5255 5.8585 2.1308 24 14 11.2472 5.6697 1.6437 25 1 11.2704 7.1291 1.9175 26 1 12.1252 4.9702 2.6158 27 1 11.7354 5.4165 0.2643 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.7225 2.9427 -1.5350 34 1 3.0110 1.1858 -2.0160 35 1 4.9995 4.7053 2.3474 36 1 6.2215 5.0152 1.0866 37 1 5.2861 2.7508 3.7010 38 1 6.8566 2.5992 4.5448 39 1 5.7584 0.8572 2.4815 40 1 7.3298 0.7049 3.3235 41 1 6.8052 2.6664 -0.4359 42 1 5.8555 1.2613 0.1152 43 1 8.7154 6.7982 2.2780 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029482103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:05 Heat of formation + Delta-G solvation = 2.315424 kcal Electronic energy + Delta-G solvation = -22921.117459 eV Core-core repulsion = 19774.006705 eV Total energy + Delta-G solvation = -3147.110754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64078 -39.84285 -37.80319 -35.39014 -34.15313 -32.94180 -32.18897 -31.07802 -28.11685 -26.13477 -25.48127 -24.72406 -24.10901 -21.48851 -21.27724 -21.02942 -19.92949 -18.72785 -17.80559 -17.03379 -16.74600 -16.56401 -15.61687 -15.50929 -15.43628 -14.92206 -14.78027 -14.61766 -14.42968 -13.56792 -13.48855 -13.41796 -13.26402 -13.17488 -12.94072 -12.84933 -12.68882 -12.59462 -12.12923 -12.02168 -11.88818 -11.82747 -11.52293 -11.47347 -11.18073 -11.13411 -10.86250 -10.82574 -10.56284 -9.71612 -8.71419 -7.84865 -5.21064 1.48988 1.50770 1.56993 1.57791 2.08988 2.51341 2.90313 3.34624 3.45543 3.54337 3.80684 3.88478 4.08387 4.11678 4.14835 4.24108 4.30595 4.33062 4.43342 4.54117 4.59170 4.66047 4.72506 4.80583 4.86514 4.95645 4.97453 5.02630 5.07601 5.09856 5.15863 5.19760 5.27340 5.28993 5.35038 5.39934 5.53065 5.54566 5.57366 5.83301 6.22265 6.63230 7.05167 7.26627 7.73137 8.51893 9.26636 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033789 B = 0.004482 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.483957 B = 6246.166385 C = 6331.269247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.117 4.117 4 H 0.088 0.912 5 C -0.137 4.137 6 C -0.193 4.193 7 H 0.150 0.850 8 C 0.528 3.472 9 O -0.603 6.603 10 N -0.591 5.591 11 C 0.128 3.872 12 C 0.167 3.833 13 H 0.077 0.923 14 C -0.129 4.129 15 C -0.111 4.111 16 C 0.126 3.874 17 H 0.099 0.901 18 C 0.102 3.898 19 N -0.605 5.605 20 C -0.233 4.233 21 H 0.084 0.916 22 C -0.058 4.058 23 N -0.940 5.940 24 Si 0.973 3.027 25 H -0.301 1.301 26 H -0.280 1.280 27 H -0.277 1.277 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 -14.881 -5.396 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.136 4.136 4 H 0.106 0.894 5 C -0.174 4.174 6 C -0.214 4.214 7 H 0.168 0.832 8 C 0.319 3.681 9 O -0.486 6.486 10 N -0.321 5.321 11 C 0.004 3.996 12 C 0.059 3.941 13 H 0.095 0.905 14 C -0.168 4.168 15 C -0.150 4.150 16 C 0.019 3.981 17 H 0.117 0.883 18 C -0.022 4.022 19 N -0.327 5.327 20 C -0.361 4.361 21 H 0.102 0.898 22 C -0.252 4.252 23 N -0.588 5.588 24 Si 0.802 3.198 25 H -0.228 1.228 26 H -0.206 1.206 27 H -0.203 1.203 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.134 0.866 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.220 -14.274 -5.151 18.296 hybrid contribution 1.058 1.549 0.217 1.888 sum -9.162 -12.725 -4.934 16.439 Atomic orbital electron populations 1.21744 0.94945 1.02314 1.01678 1.21157 0.96416 0.91728 1.03199 1.22494 0.90488 0.99675 1.00950 0.89382 1.23187 1.00783 1.02956 0.90478 1.22350 0.98328 0.98044 1.02656 0.83211 1.20419 0.81403 0.86443 0.79862 1.90606 1.54589 1.51442 1.51991 1.48354 1.05452 1.26153 1.52146 1.21897 0.96030 0.86883 0.94824 1.21593 0.86687 0.94804 0.91040 0.90526 1.22446 0.98882 0.96904 0.98578 1.22423 1.00039 0.96199 0.96297 1.22285 0.93568 0.88590 0.93648 0.88348 1.22740 0.90097 0.93439 0.95924 1.45357 1.13420 1.17595 1.56344 1.19315 0.87939 0.92062 1.36816 0.89795 1.25575 1.00833 0.96068 1.02760 1.70049 1.31345 1.03000 1.54401 0.85241 0.80207 0.76324 0.78007 1.22778 1.20635 1.20336 0.92483 0.91157 0.93640 0.89628 0.91150 0.90310 0.84546 0.93046 0.94480 0.93063 0.92764 0.90468 0.91044 0.93248 0.86558 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.87 71.98 0.71 -1.42 16 2 C -0.09 -1.34 6.22 30.60 0.19 -1.15 16 3 C -0.12 -2.61 5.25 -10.77 -0.06 -2.66 16 4 H 0.09 2.47 7.60 -2.39 -0.02 2.45 16 5 C -0.14 -2.85 9.88 30.62 0.30 -2.55 16 6 C -0.19 -4.82 4.93 -11.54 -0.06 -4.88 16 7 H 0.15 2.85 6.48 -2.39 -0.02 2.83 16 8 C 0.53 19.40 7.49 87.66 0.66 20.06 16 9 O -0.60 -27.12 15.72 -3.04 -0.05 -27.17 16 10 N -0.59 -22.78 2.28 -812.80 -1.85 -24.63 16 11 C 0.13 6.07 5.81 86.55 0.50 6.57 16 12 C 0.17 7.90 3.10 45.33 0.14 8.04 16 13 H 0.08 4.26 6.37 -2.39 -0.02 4.24 16 14 C -0.13 -5.01 6.16 31.41 0.19 -4.82 16 15 C -0.11 -3.53 6.19 31.55 0.20 -3.33 16 16 C 0.13 4.49 4.32 45.48 0.20 4.69 16 17 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 18 C 0.10 3.31 5.83 86.41 0.50 3.81 16 19 N -0.61 -28.69 2.81 -637.40 -1.79 -30.48 16 20 C -0.23 -12.17 10.37 84.03 0.87 -11.30 16 21 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 22 C -0.06 -3.17 5.42 84.86 0.46 -2.71 16 23 N -0.94 -54.55 10.42 21.65 0.23 -54.33 16 24 Si 0.97 44.43 29.56 68.60 2.03 46.46 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 0.98 7.88 -2.39 -0.02 0.96 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.14 1.90 8.03 -2.39 -0.02 1.88 16 35 H 0.05 2.53 7.11 -2.39 -0.02 2.52 16 36 H 0.04 2.03 7.83 -2.38 -0.02 2.01 16 37 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.10 7.84 -2.39 -0.02 2.08 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.12 2.67 5.64 -2.39 -0.01 2.65 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -67.48 334.97 4.36 -63.13 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.98 Total: 18.66 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.81 Total: 8.35 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.41 Total: -109.43 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -67.48 4.36 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029482103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.441 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds