Wall clock time and date at job start Tue Mar 31 2020 00:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.54937 * 29.41300 * 4 3 2 6 6 C 1.52999 * 117.49914 * 243.75241 * 4 3 2 7 7 C 1.52993 * 117.50211 * 175.09020 * 4 3 2 8 8 H 1.09003 * 117.49521 * 359.97438 * 7 4 3 9 9 C 1.50703 * 117.50142 * 215.00259 * 7 4 3 10 10 O 1.21283 * 119.99400 * 359.97438 * 9 7 4 11 11 N 1.34769 * 120.00272 * 179.97438 * 9 7 4 12 12 C 1.47874 * 126.94418 * 0.02662 * 11 9 7 13 13 C 1.56015 * 105.10267 * 181.97730 * 12 11 9 14 14 H 1.09005 * 116.24650 * 158.83914 * 13 12 11 15 15 C 1.57076 * 99.61010 * 32.80590 * 13 12 11 16 16 C 1.49284 * 126.94761 * 179.70746 * 11 9 7 17 17 H 1.09009 * 116.14866 * 16.73006 * 16 11 9 18 18 C 1.56015 * 104.09543 * 246.72591 * 16 11 9 19 19 N 1.49255 * 105.36639 * 288.93149 * 18 16 11 20 20 C 1.36936 * 127.75439 * 182.18782 * 19 18 16 21 21 H 1.07996 * 120.00301 * 179.52225 * 20 19 18 22 22 C 1.38811 * 119.99661 * 359.50850 * 20 19 18 23 23 N 1.31621 * 120.00277 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99837 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46938 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47001 * 120.00343 * 24 22 20 27 27 H 1.48496 * 109.47288 * 240.00549 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 31 31 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 33 33 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 34 34 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 35 35 H 1.08998 * 117.49773 * 359.97438 * 6 4 3 36 36 H 1.09000 * 117.50121 * 145.01904 * 6 4 3 37 37 H 1.09002 * 110.31719 * 300.88410 * 12 11 9 38 38 H 1.09005 * 110.31585 * 62.97288 * 12 11 9 39 39 H 1.09001 * 112.37178 * 64.27199 * 15 13 12 40 40 H 1.09002 * 112.36886 * 191.62717 * 15 13 12 41 41 H 1.08993 * 110.31920 * 47.67159 * 18 16 11 42 42 H 1.09001 * 110.31999 * 169.76134 * 18 16 11 43 43 H 0.97001 * 119.99992 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0404 0.5860 -0.4820 6 6 4.2759 2.0430 1.2180 7 6 4.2764 2.7947 -0.1154 8 1 3.6512 3.6842 -0.1926 9 6 5.5693 2.8403 -0.8884 10 8 6.0121 1.8285 -1.3896 11 7 6.2335 4.0052 -1.0226 12 6 5.8374 5.3220 -0.4787 13 6 6.9336 6.3141 -0.9768 14 1 6.6570 7.3683 -0.9958 15 6 7.2755 5.6539 -2.3605 16 6 7.5213 4.2259 -1.7449 17 1 7.8235 3.4412 -2.4386 18 6 8.5316 4.5970 -0.6155 19 7 8.1367 5.9640 -0.1650 20 6 8.7454 6.7431 0.7824 21 1 8.3551 7.7248 1.0064 22 6 9.8641 6.2709 1.4550 23 7 10.3400 5.0745 1.1818 24 14 10.6942 7.3333 2.7479 25 1 9.9700 8.6244 2.8670 26 1 10.6705 6.6305 4.0558 27 1 12.1014 7.5896 2.3491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.6503 2.4384 2.0183 36 1 5.2109 1.5817 1.5360 37 1 4.8603 5.6126 -0.8649 38 1 5.8193 5.2915 0.6108 39 1 6.4307 5.6722 -3.0490 40 1 8.1761 6.0733 -2.8090 41 1 8.4495 3.8926 0.2122 42 1 9.5494 4.6046 -1.0056 43 1 11.1219 4.7447 1.6516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032613454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:05 Heat of formation + Delta-G solvation = 30.770468 kcal Electronic energy + Delta-G solvation = -22095.835386 eV Core-core repulsion = 18949.958536 eV Total energy + Delta-G solvation = -3145.876850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.11910 -38.58273 -36.64426 -33.91283 -33.53937 -31.48084 -29.13548 -28.50607 -27.54638 -25.22384 -24.37862 -22.88588 -22.02953 -20.69842 -19.97223 -19.77367 -18.31190 -17.30429 -16.36464 -15.77366 -15.33969 -15.03063 -14.81777 -14.25246 -13.96715 -13.65599 -13.29225 -13.13035 -12.89825 -12.31138 -12.23920 -12.05151 -11.81422 -11.61639 -11.42198 -11.30311 -11.10841 -11.01745 -10.94900 -10.87345 -10.77745 -10.58680 -10.26789 -10.15358 -10.05369 -9.93059 -9.62696 -9.36303 -8.73092 -7.97045 -6.93093 -5.77852 -3.11670 2.90746 3.34933 3.36798 3.41429 3.44666 3.99225 4.40892 4.52456 4.79253 4.84355 4.93660 5.03691 5.07203 5.18689 5.20408 5.31839 5.36755 5.42845 5.56403 5.58778 5.63955 5.66657 5.73641 5.75759 5.78236 5.89284 5.92958 6.04278 6.11820 6.13052 6.20810 6.30193 6.37093 6.42526 6.52154 6.59369 6.71673 7.39597 7.46363 7.69450 8.05959 8.14807 8.65299 9.07116 9.69867 10.40518 11.35355 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.003942 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.152510 B = 7100.656841 C = 7508.900588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.122 4.122 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.180 4.180 8 H 0.117 0.883 9 C 0.556 3.444 10 O -0.559 6.559 11 N -0.603 5.603 12 C 0.086 3.914 13 C 0.139 3.861 14 H 0.104 0.896 15 C -0.152 4.152 16 C 0.099 3.901 17 H 0.113 0.887 18 C 0.173 3.827 19 N -0.597 5.597 20 C -0.229 4.229 21 H 0.082 0.918 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 -3.879 -3.466 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.141 4.141 5 H 0.134 0.866 6 C -0.184 4.184 7 C -0.201 4.201 8 H 0.135 0.865 9 C 0.345 3.655 10 O -0.438 6.438 11 N -0.335 5.335 12 C -0.039 4.039 13 C 0.030 3.970 14 H 0.122 0.878 15 C -0.192 4.192 16 C -0.004 4.004 17 H 0.131 0.869 18 C 0.048 3.952 19 N -0.322 5.322 20 C -0.357 4.357 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.627 -4.481 -3.511 16.632 hybrid contribution 0.548 0.620 0.826 1.169 sum -15.080 -3.860 -2.685 15.796 Atomic orbital electron populations 1.21782 0.96022 1.01487 1.01709 1.21503 0.95462 0.96677 1.02343 1.21226 0.92204 0.97140 1.02019 1.22424 0.94316 0.95829 1.01512 0.86618 1.23070 1.02976 1.02074 0.90307 1.22244 0.97795 0.98016 1.02072 0.86457 1.19181 0.84309 0.82019 0.80012 1.90640 1.69358 1.33425 1.50404 1.49123 1.23809 1.07852 1.52736 1.23285 0.97944 0.83536 0.99136 1.23160 0.87973 0.95927 0.89951 0.87781 1.24216 1.01306 0.96242 0.97424 1.24387 0.84611 0.95990 0.95397 0.86877 1.22119 0.94127 0.86288 0.92650 1.45538 1.28988 1.15030 1.42627 1.19078 1.07579 0.97344 1.11664 0.90041 1.24822 0.98483 0.96957 1.00100 1.69918 1.25321 1.17068 1.44253 0.86046 0.79275 0.79254 0.81154 1.20460 1.21791 1.21750 0.92855 0.92820 0.92811 0.91808 0.91831 0.91577 0.91738 0.88080 0.88298 0.93014 0.91034 0.91598 0.89834 0.93380 0.92651 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.08 5.89 -26.73 -0.16 -1.24 16 3 C -0.09 -0.87 5.50 -26.73 -0.15 -1.02 16 4 C -0.12 -1.56 5.25 -90.62 -0.48 -2.03 16 5 H 0.12 1.67 7.60 -51.93 -0.39 1.27 16 6 C -0.15 -1.95 9.88 -26.69 -0.26 -2.22 16 7 C -0.18 -2.64 5.31 -91.74 -0.49 -3.13 16 8 H 0.12 1.50 7.81 -51.93 -0.41 1.10 16 9 C 0.56 10.51 7.68 -10.99 -0.08 10.43 16 10 O -0.56 -12.24 16.61 5.56 0.09 -12.15 16 11 N -0.60 -11.40 2.95 -156.56 -0.46 -11.86 16 12 C 0.09 1.49 5.82 -1.67 -0.01 1.48 16 13 C 0.14 2.59 5.47 -62.55 -0.34 2.24 16 14 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 15 C -0.15 -2.60 6.84 -22.10 -0.15 -2.75 16 16 C 0.10 1.95 5.25 -62.36 -0.33 1.62 16 17 H 0.11 2.18 8.06 -51.92 -0.42 1.77 16 18 C 0.17 4.18 4.83 -0.90 0.00 4.18 16 19 N -0.60 -14.42 3.07 -155.22 -0.48 -14.89 16 20 C -0.23 -6.08 10.38 -15.06 -0.16 -6.24 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.88 10.69 55.49 0.59 -26.29 16 24 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 35 H 0.10 1.12 8.03 -51.93 -0.42 0.71 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.05 1.34 7.72 -51.93 -0.40 0.94 16 42 H 0.06 1.47 7.53 -51.93 -0.39 1.08 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.23 346.10 -9.85 -41.08 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.45 Total: 1.94 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.33 Total: 0.27 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.35 Total: -53.04 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.23 -9.85 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032613454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.851 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds