Wall clock time and date at job start Tue Mar 31 2020 00:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.54937 * 29.41300 * 4 3 2 6 6 C 1.52999 * 117.49914 * 243.75241 * 4 3 2 7 7 C 1.52993 * 117.50211 * 175.09020 * 4 3 2 8 8 H 1.09003 * 117.49521 * 359.97438 * 7 4 3 9 9 C 1.50703 * 117.50142 * 215.00259 * 7 4 3 10 10 O 1.21283 * 119.99400 * 359.97438 * 9 7 4 11 11 N 1.34769 * 120.00272 * 179.97438 * 9 7 4 12 12 C 1.47874 * 126.94418 * 0.02662 * 11 9 7 13 13 C 1.56015 * 105.10267 * 181.97730 * 12 11 9 14 14 H 1.09005 * 116.24650 * 158.83914 * 13 12 11 15 15 C 1.57076 * 99.61010 * 32.80590 * 13 12 11 16 16 C 1.49284 * 126.94761 * 179.70746 * 11 9 7 17 17 H 1.09009 * 116.14866 * 16.73006 * 16 11 9 18 18 C 1.56015 * 104.09543 * 246.72591 * 16 11 9 19 19 N 1.49255 * 105.36639 * 288.93149 * 18 16 11 20 20 C 1.36936 * 127.75439 * 182.18782 * 19 18 16 21 21 H 1.07996 * 120.00301 * 179.52225 * 20 19 18 22 22 C 1.38811 * 119.99661 * 359.50850 * 20 19 18 23 23 N 1.31621 * 120.00277 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99837 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46938 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47001 * 120.00343 * 24 22 20 27 27 H 1.48496 * 109.47288 * 240.00549 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 31 31 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 33 33 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 34 34 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 35 35 H 1.08998 * 117.49773 * 359.97438 * 6 4 3 36 36 H 1.09000 * 117.50121 * 145.01904 * 6 4 3 37 37 H 1.09002 * 110.31719 * 300.88410 * 12 11 9 38 38 H 1.09005 * 110.31585 * 62.97288 * 12 11 9 39 39 H 1.09001 * 112.37178 * 64.27199 * 15 13 12 40 40 H 1.09002 * 112.36886 * 191.62717 * 15 13 12 41 41 H 1.08993 * 110.31920 * 47.67159 * 18 16 11 42 42 H 1.09001 * 110.31999 * 169.76134 * 18 16 11 43 43 H 0.97001 * 119.99992 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0404 0.5860 -0.4820 6 6 4.2759 2.0430 1.2180 7 6 4.2764 2.7947 -0.1154 8 1 3.6512 3.6842 -0.1926 9 6 5.5693 2.8403 -0.8884 10 8 6.0121 1.8285 -1.3896 11 7 6.2335 4.0052 -1.0226 12 6 5.8374 5.3220 -0.4787 13 6 6.9336 6.3141 -0.9768 14 1 6.6570 7.3683 -0.9958 15 6 7.2755 5.6539 -2.3605 16 6 7.5213 4.2259 -1.7449 17 1 7.8235 3.4412 -2.4386 18 6 8.5316 4.5970 -0.6155 19 7 8.1367 5.9640 -0.1650 20 6 8.7454 6.7431 0.7824 21 1 8.3551 7.7248 1.0064 22 6 9.8641 6.2709 1.4550 23 7 10.3400 5.0745 1.1818 24 14 10.6942 7.3333 2.7479 25 1 9.9700 8.6244 2.8670 26 1 10.6705 6.6305 4.0558 27 1 12.1014 7.5896 2.3491 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.6503 2.4384 2.0183 36 1 5.2109 1.5817 1.5360 37 1 4.8603 5.6126 -0.8649 38 1 5.8193 5.2915 0.6108 39 1 6.4307 5.6722 -3.0490 40 1 8.1761 6.0733 -2.8090 41 1 8.4495 3.8926 0.2122 42 1 9.5494 4.6046 -1.0056 43 1 11.1219 4.7447 1.6516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032613454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:04 Heat of formation + Delta-G solvation = 13.234550 kcal Electronic energy + Delta-G solvation = -22096.595801 eV Core-core repulsion = 18949.958536 eV Total energy + Delta-G solvation = -3146.637265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62919 -39.96777 -37.89868 -35.41702 -34.71625 -33.24929 -30.83473 -30.21337 -28.34811 -26.98866 -25.87576 -24.45572 -22.84274 -21.84091 -21.41191 -21.23659 -19.89135 -18.87372 -18.03071 -17.40295 -16.64988 -16.32930 -16.01475 -15.80682 -15.35068 -15.11963 -14.70710 -14.25457 -13.95076 -13.77692 -13.52107 -13.36728 -13.17045 -13.06321 -12.88685 -12.83535 -12.76519 -12.33595 -12.21171 -12.14143 -12.00964 -11.93184 -11.87867 -11.66353 -11.53553 -11.17799 -11.02496 -10.86013 -10.67779 -9.54553 -8.92060 -7.85827 -5.20946 1.46651 1.47126 1.49300 1.57566 1.94018 2.47811 2.85937 3.30703 3.33952 3.49255 3.71572 3.76782 3.86223 3.89920 3.99652 4.13094 4.18935 4.20906 4.30335 4.38478 4.57070 4.63875 4.68003 4.78734 4.83320 4.89254 4.93050 4.94894 4.98069 5.03259 5.06872 5.12606 5.21843 5.24149 5.37756 5.42145 5.43206 5.50950 5.53644 5.61928 6.06542 6.66780 6.99281 7.16174 7.68712 8.41685 9.26884 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025399 B = 0.003942 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.152510 B = 7100.656841 C = 7508.900588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.146 4.146 7 C -0.187 4.187 8 H 0.147 0.853 9 C 0.545 3.455 10 O -0.599 6.599 11 N -0.606 5.606 12 C 0.094 3.906 13 C 0.133 3.867 14 H 0.136 0.864 15 C -0.129 4.129 16 C 0.098 3.902 17 H 0.112 0.888 18 C 0.187 3.813 19 N -0.617 5.617 20 C -0.225 4.225 21 H 0.098 0.902 22 C -0.074 4.074 23 N -0.959 5.959 24 Si 0.978 3.022 25 H -0.257 1.257 26 H -0.300 1.300 27 H -0.297 1.297 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.080 0.920 41 H -0.005 1.005 42 H 0.018 0.982 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.409 -1.840 -3.768 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.118 4.118 4 C -0.128 4.128 5 H 0.110 0.890 6 C -0.184 4.184 7 C -0.208 4.208 8 H 0.165 0.835 9 C 0.336 3.664 10 O -0.482 6.482 11 N -0.338 5.338 12 C -0.030 4.030 13 C 0.027 3.973 14 H 0.153 0.847 15 C -0.168 4.168 16 C -0.005 4.005 17 H 0.130 0.870 18 C 0.061 3.939 19 N -0.342 5.342 20 C -0.354 4.354 21 H 0.116 0.884 22 C -0.267 4.267 23 N -0.609 5.609 24 Si 0.807 3.193 25 H -0.180 1.180 26 H -0.228 1.228 27 H -0.225 1.225 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.014 0.986 42 H 0.036 0.964 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -19.047 -2.394 -3.829 19.575 hybrid contribution 1.590 -0.051 0.893 1.824 sum -17.457 -2.444 -2.937 17.870 Atomic orbital electron populations 1.21756 0.94653 1.02051 1.02246 1.21506 0.96619 0.96087 1.01909 1.21233 0.89450 0.97936 1.03194 1.22454 0.96192 0.93919 1.00194 0.89017 1.23147 1.02510 1.01801 0.90907 1.22296 0.96118 1.00164 1.02184 0.83532 1.20012 0.85522 0.81224 0.79625 1.90614 1.70784 1.34736 1.52074 1.49236 1.23151 1.08814 1.52613 1.23216 0.99606 0.82062 0.98141 1.23591 0.86058 0.98049 0.89617 0.84660 1.24118 1.02636 0.92907 0.97109 1.24214 0.84114 0.98044 0.94129 0.87042 1.21716 0.93899 0.86043 0.92265 1.45790 1.30777 1.14649 1.42996 1.19584 1.06890 0.97832 1.11094 0.88397 1.25686 0.99941 0.98203 1.02846 1.70162 1.25748 1.19156 1.45797 0.85006 0.77875 0.78432 0.78016 1.18033 1.22778 1.22497 0.92377 0.92100 0.92421 0.92033 0.92659 0.90768 0.90043 0.85063 0.90989 0.88010 0.92951 0.87752 0.90097 0.98627 0.96421 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.95 5.89 30.60 0.18 -1.77 16 3 C -0.08 -1.36 5.50 30.60 0.17 -1.19 16 4 C -0.11 -2.63 5.25 -10.79 -0.06 -2.69 16 5 H 0.09 2.69 7.60 -2.39 -0.02 2.67 16 6 C -0.15 -3.72 9.88 30.62 0.30 -3.42 16 7 C -0.19 -5.12 5.31 -11.52 -0.06 -5.18 16 8 H 0.15 3.14 7.81 -2.39 -0.02 3.12 16 9 C 0.55 20.47 7.68 87.66 0.67 21.14 16 10 O -0.60 -27.03 16.61 -3.04 -0.05 -27.08 16 11 N -0.61 -22.36 2.95 -767.63 -2.26 -24.62 16 12 C 0.09 2.96 5.82 87.16 0.51 3.47 16 13 C 0.13 4.58 5.47 46.93 0.26 4.84 16 14 H 0.14 3.85 8.14 -2.38 -0.02 3.83 16 15 C -0.13 -4.05 6.84 33.59 0.23 -3.82 16 16 C 0.10 3.90 5.25 47.06 0.25 4.15 16 17 H 0.11 4.43 8.06 -2.38 -0.02 4.41 16 18 C 0.19 9.47 4.83 86.89 0.42 9.89 16 19 N -0.62 -29.80 3.07 -645.00 -1.98 -31.78 16 20 C -0.23 -11.94 10.38 84.03 0.87 -11.07 16 21 H 0.10 4.76 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 23 N -0.96 -59.11 10.69 21.65 0.23 -58.87 16 24 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.13 7.87 -2.39 -0.02 1.11 16 35 H 0.13 2.54 8.03 -2.39 -0.02 2.52 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.29 8.08 -2.39 -0.02 2.27 16 38 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.00 -0.27 7.72 -2.39 -0.02 -0.29 16 42 H 0.02 1.01 7.53 -2.39 -0.02 0.99 16 43 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -72.66 346.10 3.85 -68.81 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.96 Total: 16.68 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.92 Total: 9.49 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.01 Total: -115.28 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.66 3.85 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032613454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.041 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds