Wall clock time and date at job start Tue Mar 31 2020 00:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 119.99931 * 2 1 4 4 C 1.32993 * 120.00205 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99680 * 352.08444 * 4 2 1 6 6 O 1.21621 * 120.00018 * 353.30625 * 5 4 2 7 7 N 1.34771 * 120.00102 * 173.30497 * 5 4 2 8 8 C 1.46889 * 120.47434 * 174.41536 * 7 5 4 9 9 C 1.53342 * 108.75905 * 124.47393 * 8 7 5 10 10 C 1.52665 * 109.11293 * 52.41576 * 9 8 7 11 11 C 1.53501 * 113.57472 * 73.84134 * 10 9 8 12 12 N 1.47665 * 85.98263 * 91.00528 * 11 10 9 13 13 C 1.36940 * 134.45936 * 204.29362 * 12 11 10 14 14 H 1.07999 * 119.99746 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99854 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47010 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46952 * 119.99817 * 17 15 13 20 20 H 1.48500 * 109.46962 * 240.00075 * 17 15 13 21 21 C 1.47668 * 91.08447 * 24.32036 * 12 11 10 22 22 C 1.52670 * 113.19266 * 302.41957 * 10 9 8 23 23 C 1.46889 * 120.47025 * 354.43890 * 7 5 4 24 24 H 1.08996 * 109.47043 * 263.67994 * 1 2 3 25 25 H 1.09005 * 109.47085 * 23.67202 * 1 2 3 26 26 H 1.09002 * 109.47076 * 143.67211 * 1 2 3 27 27 H 1.09002 * 109.47369 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47258 * 299.99888 * 3 2 1 29 29 H 1.09002 * 109.47463 * 59.99560 * 3 2 1 30 30 H 1.07996 * 120.00361 * 172.08943 * 4 2 1 31 31 H 1.08993 * 109.59034 * 4.69258 * 8 7 5 32 32 H 1.09004 * 109.59053 * 244.25353 * 8 7 5 33 33 H 1.09003 * 109.52398 * 292.52504 * 9 8 7 34 34 H 1.08992 * 109.53035 * 172.31034 * 9 8 7 35 35 H 1.09006 * 113.79560 * 205.27369 * 11 10 9 36 36 H 1.09000 * 113.79304 * 336.74349 * 11 10 9 37 37 H 0.97008 * 120.00106 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.78463 * 221.41340 * 21 12 11 39 39 H 1.08993 * 113.79498 * 89.95153 * 21 12 11 40 40 H 1.08994 * 109.53542 * 177.47144 * 22 10 9 41 41 H 1.08999 * 109.52698 * 297.69213 * 22 10 9 42 42 H 1.08994 * 109.58799 * 355.30635 * 23 7 5 43 43 H 1.08996 * 109.58840 * 115.73888 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4470 -2.4195 0.1765 6 8 0.2603 -2.4095 0.4427 7 7 2.0977 -3.5921 0.0428 8 6 1.4161 -4.8599 0.3354 9 6 1.5125 -5.7675 -0.8969 10 6 2.9736 -5.8733 -1.3267 11 6 3.8236 -6.7546 -0.4009 12 7 3.4601 -7.8687 -1.2993 13 6 3.3789 -9.2282 -1.1569 14 1 3.6146 -9.6868 -0.2079 15 6 2.9937 -10.0169 -2.2323 16 7 2.7070 -9.4580 -3.3889 17 14 2.8823 -11.8715 -2.0379 18 1 3.2538 -12.2469 -0.6500 19 1 1.4929 -12.3157 -2.3163 20 1 3.8122 -12.5260 -2.9929 21 6 3.2200 -6.9293 -2.4130 22 6 3.6094 -4.5197 -1.6341 23 6 3.4989 -3.6205 -0.3970 24 1 -0.3633 -0.1131 1.0214 25 1 -0.3633 0.9412 -0.4126 26 1 -0.3633 -0.8279 -0.6088 27 1 3.3322 1.1060 -0.0005 28 1 1.9972 1.8767 -0.8900 29 1 1.9971 1.8768 0.8899 30 1 3.2443 -1.1563 -0.1282 31 1 0.3684 -4.6669 0.5659 32 1 1.8961 -5.3454 1.1852 33 1 0.9234 -5.3422 -1.7095 34 1 1.1325 -6.7587 -0.6500 35 1 4.8855 -6.5087 -0.4125 36 1 3.4191 -6.8523 0.6066 37 1 2.4381 -10.0092 -4.1405 38 1 2.3357 -7.1659 -3.0048 39 1 4.1023 -6.7353 -3.0228 40 1 4.6595 -4.6600 -1.8900 41 1 3.0884 -4.0541 -2.4707 42 1 3.8233 -2.6109 -0.6490 43 1 4.1246 -4.0190 0.4015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035644072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:47 Heat of formation + Delta-G solvation = 34.352144 kcal Electronic energy + Delta-G solvation = -22244.531804 eV Core-core repulsion = 19098.810267 eV Total energy + Delta-G solvation = -3145.721537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.30893 -38.81528 -36.06003 -35.21369 -32.47766 -31.11456 -30.47487 -28.13656 -27.81228 -26.62917 -24.99684 -23.56326 -23.16085 -21.40310 -20.23748 -18.28794 -17.58927 -16.80668 -16.66510 -15.52939 -15.10293 -14.84710 -14.59517 -14.36057 -14.04926 -13.85545 -13.71517 -13.51814 -12.97680 -12.55320 -12.52394 -12.38616 -12.30768 -12.03979 -11.79951 -11.63205 -11.54147 -11.07022 -10.98626 -10.84427 -10.78674 -10.29886 -10.09651 -9.67956 -9.58202 -9.41056 -9.27650 -9.21678 -8.76119 -8.27726 -6.82562 -5.73383 -3.04957 1.32035 3.20943 3.36895 3.40223 3.45651 3.48091 4.48184 4.52744 4.66952 4.87571 5.06859 5.12983 5.18310 5.25000 5.29422 5.38087 5.42279 5.50109 5.54308 5.60473 5.61985 5.74980 5.76012 5.93106 5.97710 5.99077 6.02114 6.26025 6.30409 6.34883 6.39623 6.46970 6.51616 6.67850 6.70716 6.85877 6.94433 7.27491 7.41778 7.61976 7.63457 8.02370 8.35864 9.08538 9.74679 10.65296 11.43614 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043527 B = 0.003592 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.122701 B = 7794.064388 C = 7993.481811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.040 4.040 3 C -0.125 4.125 4 C -0.233 4.233 5 C 0.544 3.456 6 O -0.550 6.550 7 N -0.603 5.603 8 C 0.114 3.886 9 C -0.095 4.095 10 C -0.108 4.108 11 C 0.126 3.874 12 N -0.609 5.609 13 C -0.220 4.220 14 H 0.078 0.922 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.173 3.827 22 C -0.118 4.118 23 C 0.109 3.891 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.252 0.748 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 19.697 5.858 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.042 4.042 3 C -0.182 4.182 4 C -0.253 4.253 5 C 0.336 3.664 6 O -0.431 6.431 7 N -0.335 5.335 8 C -0.008 4.008 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.000 4.000 12 N -0.335 5.335 13 C -0.348 4.348 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.568 5.568 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.047 3.953 22 C -0.157 4.157 23 C -0.013 4.013 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.035 19.321 5.906 20.204 hybrid contribution 0.396 -1.214 -0.115 1.282 sum 0.431 18.108 5.791 19.016 Atomic orbital electron populations 1.21078 0.90969 1.02104 1.03601 1.22539 0.96868 0.94417 0.90345 1.20994 0.99827 0.94584 1.02763 1.22553 1.00353 0.92162 1.10270 1.18536 0.86537 0.84157 0.77212 1.90730 1.15193 1.87370 1.49767 1.47999 1.13079 1.06131 1.66273 1.21670 0.98322 0.82865 0.97967 1.21472 0.95411 0.99946 0.96521 1.22381 0.95076 0.92873 1.00634 1.22589 0.95450 0.87581 0.94354 1.45966 1.78278 1.00945 1.08325 1.19059 1.38941 0.80152 0.96652 0.90384 1.24758 1.02206 0.97885 0.95648 1.69828 1.51909 1.33679 1.01390 0.86089 0.77313 0.85396 0.77234 1.20531 1.21747 1.21849 1.22235 0.98801 0.83841 0.90374 1.21829 1.01279 0.95818 0.96803 1.21818 0.81656 1.00538 0.97329 0.90433 0.92933 0.89413 0.91462 0.90814 0.90546 0.85435 0.89439 0.91634 0.92191 0.89595 0.95192 0.94193 0.93790 0.91029 0.95797 0.90765 0.91821 0.90123 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.45 36.01 0.30 -1.00 16 2 C -0.04 -0.40 6.10 -101.17 -0.62 -1.01 16 3 C -0.13 -0.83 10.09 36.01 0.36 -0.47 16 4 C -0.23 -2.61 8.82 -37.81 -0.33 -2.94 16 5 C 0.54 7.90 7.47 -12.67 -0.09 7.81 16 6 O -0.55 -9.41 12.72 5.26 0.07 -9.35 16 7 N -0.60 -8.53 2.94 -174.04 -0.51 -9.04 16 8 C 0.11 1.76 6.30 -3.65 -0.02 1.73 16 9 C -0.10 -1.68 5.21 -26.73 -0.14 -1.82 16 10 C -0.11 -1.95 0.77 -154.43 -0.12 -2.07 16 11 C 0.13 2.51 7.72 -3.15 -0.02 2.49 16 12 N -0.61 -15.42 3.53 -179.77 -0.64 -16.06 16 13 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 14 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 16 N -0.92 -27.38 11.39 55.49 0.63 -26.75 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C 0.17 4.01 6.64 -3.15 -0.02 3.99 16 22 C -0.12 -1.68 5.26 -26.72 -0.14 -1.82 16 23 C 0.11 1.31 6.19 -3.65 -0.02 1.29 16 24 H 0.08 0.89 7.98 -51.93 -0.41 0.47 16 25 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.09 1.16 6.28 -51.93 -0.33 0.84 16 27 H 0.07 0.39 7.82 -51.93 -0.41 -0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.13 1.14 5.89 -52.49 -0.31 0.83 16 31 H 0.09 1.41 6.97 -51.93 -0.36 1.05 16 32 H 0.07 0.98 7.50 -51.93 -0.39 0.59 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.73 8.01 -51.93 -0.42 1.31 16 35 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.04 0.77 7.41 -51.93 -0.38 0.38 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 39 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.77 5.39 -51.93 -0.28 0.49 16 43 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -32.13 336.23 -8.52 -40.65 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.99 Total: -1.30 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.13 Total: -0.50 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.51 Total: -51.85 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.13 -8.52 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035644072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.004 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds