Wall clock time and date at job start Tue Mar 31 2020 00:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 119.99931 * 2 1 4 4 C 1.32993 * 120.00205 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99680 * 352.08444 * 4 2 1 6 6 O 1.21621 * 120.00018 * 353.30625 * 5 4 2 7 7 N 1.34771 * 120.00102 * 173.30497 * 5 4 2 8 8 C 1.46889 * 120.47434 * 174.41536 * 7 5 4 9 9 C 1.53342 * 108.75905 * 124.47393 * 8 7 5 10 10 C 1.52665 * 109.11293 * 52.41576 * 9 8 7 11 11 C 1.53501 * 113.57472 * 73.84134 * 10 9 8 12 12 N 1.47665 * 85.98263 * 91.00528 * 11 10 9 13 13 C 1.36940 * 134.45936 * 204.29362 * 12 11 10 14 14 H 1.07999 * 119.99746 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99854 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99830 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47010 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46952 * 119.99817 * 17 15 13 20 20 H 1.48500 * 109.46962 * 240.00075 * 17 15 13 21 21 C 1.47668 * 91.08447 * 24.32036 * 12 11 10 22 22 C 1.52670 * 113.19266 * 302.41957 * 10 9 8 23 23 C 1.46889 * 120.47025 * 354.43890 * 7 5 4 24 24 H 1.08996 * 109.47043 * 263.67994 * 1 2 3 25 25 H 1.09005 * 109.47085 * 23.67202 * 1 2 3 26 26 H 1.09002 * 109.47076 * 143.67211 * 1 2 3 27 27 H 1.09002 * 109.47369 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47258 * 299.99888 * 3 2 1 29 29 H 1.09002 * 109.47463 * 59.99560 * 3 2 1 30 30 H 1.07996 * 120.00361 * 172.08943 * 4 2 1 31 31 H 1.08993 * 109.59034 * 4.69258 * 8 7 5 32 32 H 1.09004 * 109.59053 * 244.25353 * 8 7 5 33 33 H 1.09003 * 109.52398 * 292.52504 * 9 8 7 34 34 H 1.08992 * 109.53035 * 172.31034 * 9 8 7 35 35 H 1.09006 * 113.79560 * 205.27369 * 11 10 9 36 36 H 1.09000 * 113.79304 * 336.74349 * 11 10 9 37 37 H 0.97008 * 120.00106 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.78463 * 221.41340 * 21 12 11 39 39 H 1.08993 * 113.79498 * 89.95153 * 21 12 11 40 40 H 1.08994 * 109.53542 * 177.47144 * 22 10 9 41 41 H 1.08999 * 109.52698 * 297.69213 * 22 10 9 42 42 H 1.08994 * 109.58799 * 355.30635 * 23 7 5 43 43 H 1.08996 * 109.58840 * 115.73888 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4470 -2.4195 0.1765 6 8 0.2603 -2.4095 0.4427 7 7 2.0977 -3.5921 0.0428 8 6 1.4161 -4.8599 0.3354 9 6 1.5125 -5.7675 -0.8969 10 6 2.9736 -5.8733 -1.3267 11 6 3.8236 -6.7546 -0.4009 12 7 3.4601 -7.8687 -1.2993 13 6 3.3789 -9.2282 -1.1569 14 1 3.6146 -9.6868 -0.2079 15 6 2.9937 -10.0169 -2.2323 16 7 2.7070 -9.4580 -3.3889 17 14 2.8823 -11.8715 -2.0379 18 1 3.2538 -12.2469 -0.6500 19 1 1.4929 -12.3157 -2.3163 20 1 3.8122 -12.5260 -2.9929 21 6 3.2200 -6.9293 -2.4130 22 6 3.6094 -4.5197 -1.6341 23 6 3.4989 -3.6205 -0.3970 24 1 -0.3633 -0.1131 1.0214 25 1 -0.3633 0.9412 -0.4126 26 1 -0.3633 -0.8279 -0.6088 27 1 3.3322 1.1060 -0.0005 28 1 1.9972 1.8767 -0.8900 29 1 1.9971 1.8768 0.8899 30 1 3.2443 -1.1563 -0.1282 31 1 0.3684 -4.6669 0.5659 32 1 1.8961 -5.3454 1.1852 33 1 0.9234 -5.3422 -1.7095 34 1 1.1325 -6.7587 -0.6500 35 1 4.8855 -6.5087 -0.4125 36 1 3.4191 -6.8523 0.6066 37 1 2.4381 -10.0092 -4.1405 38 1 2.3357 -7.1659 -3.0048 39 1 4.1023 -6.7353 -3.0228 40 1 4.6595 -4.6600 -1.8900 41 1 3.0884 -4.0541 -2.4707 42 1 3.8233 -2.6109 -0.6490 43 1 4.1246 -4.0190 0.4015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035644072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:46 Heat of formation + Delta-G solvation = 15.237772 kcal Electronic energy + Delta-G solvation = -22245.360665 eV Core-core repulsion = 19098.810267 eV Total energy + Delta-G solvation = -3146.550399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56450 -40.21083 -37.27749 -36.17330 -34.41242 -32.39082 -32.01231 -29.16417 -28.61428 -28.22636 -26.71952 -25.03937 -24.38906 -23.01134 -21.43263 -19.42973 -18.70312 -18.63518 -18.02054 -16.88586 -16.58436 -16.21245 -16.09356 -15.64702 -15.29544 -15.03593 -14.84131 -14.74285 -14.12693 -13.96268 -13.74656 -13.61566 -13.30340 -13.12123 -13.09841 -12.89482 -12.84899 -12.64291 -12.52225 -12.32622 -12.12655 -12.11189 -11.65822 -11.53202 -11.10656 -11.01587 -10.81671 -10.47237 -10.06681 -9.43176 -8.86952 -7.88798 -5.20803 0.46920 1.43885 1.44696 1.54786 2.13654 2.35236 2.47738 3.31900 3.42895 3.62376 3.67512 3.90637 3.99783 4.03491 4.18365 4.29956 4.33634 4.44757 4.60646 4.68532 4.70727 4.73947 4.76875 4.77538 4.88570 4.90750 4.95456 4.96539 5.04756 5.10675 5.15167 5.21777 5.25216 5.29833 5.35849 5.55907 5.59992 5.61693 5.72939 5.78734 5.97385 6.57247 6.94509 7.27885 7.63554 8.60946 9.28112 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043527 B = 0.003592 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.122701 B = 7794.064388 C = 7993.481811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.029 4.029 3 C -0.122 4.122 4 C -0.248 4.248 5 C 0.535 3.465 6 O -0.587 6.587 7 N -0.606 5.606 8 C 0.125 3.875 9 C -0.088 4.088 10 C -0.083 4.083 11 C 0.131 3.869 12 N -0.640 5.640 13 C -0.229 4.229 14 H 0.082 0.918 15 C -0.070 4.070 16 N -0.954 5.954 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.294 1.294 20 H -0.293 1.293 21 C 0.167 3.833 22 C -0.112 4.112 23 C 0.113 3.887 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.246 0.754 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 22.114 7.115 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.031 4.031 3 C -0.178 4.178 4 C -0.269 4.269 5 C 0.329 3.671 6 O -0.470 6.470 7 N -0.337 5.337 8 C 0.002 3.998 9 C -0.127 4.127 10 C -0.084 4.084 11 C 0.006 3.994 12 N -0.366 5.366 13 C -0.357 4.357 14 H 0.099 0.901 15 C -0.262 4.262 16 N -0.604 5.604 17 Si 0.804 3.196 18 H -0.189 1.189 19 H -0.221 1.221 20 H -0.220 1.220 21 C 0.042 3.958 22 C -0.151 4.151 23 C -0.009 4.009 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.851 21.769 7.193 23.001 hybrid contribution -0.219 -1.903 -0.496 1.979 sum 1.632 19.866 6.697 21.027 Atomic orbital electron populations 1.21037 0.92230 1.02144 1.02530 1.22883 0.96344 0.95863 0.88015 1.21066 1.00231 0.92640 1.03911 1.22609 1.01532 0.90500 1.12217 1.19208 0.86313 0.85216 0.76375 1.90721 1.16952 1.87908 1.51413 1.48078 1.13933 1.05402 1.66312 1.21399 0.98274 0.83409 0.96692 1.21333 0.95119 0.98760 0.97439 1.22100 0.95136 0.94057 0.97097 1.22767 0.96746 0.85607 0.94273 1.46339 1.78762 1.01105 1.10373 1.19448 1.37651 0.81947 0.96684 0.90072 1.25580 1.02846 1.02230 0.95583 1.70025 1.53485 1.34846 1.01995 0.85058 0.76712 0.80204 0.77675 1.18940 1.22146 1.22019 1.22180 0.96798 0.85893 0.90944 1.21796 1.01665 0.93436 0.98209 1.21987 0.80469 1.02080 0.96380 0.91482 0.90545 0.92343 0.89928 0.89467 0.89321 0.82501 0.90561 0.90770 0.93119 0.92863 0.93039 0.93295 0.94503 0.95020 0.96497 0.89189 0.91763 0.86538 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.45 71.24 0.60 -1.90 16 2 C -0.03 -0.50 6.10 -17.62 -0.11 -0.60 16 3 C -0.12 -1.10 10.09 71.24 0.72 -0.38 16 4 C -0.25 -4.78 8.82 23.43 0.21 -4.57 16 5 C 0.54 14.76 7.47 86.57 0.65 15.41 16 6 O -0.59 -20.19 12.72 -4.10 -0.05 -20.24 16 7 N -0.61 -15.99 2.94 -822.80 -2.42 -18.41 16 8 C 0.13 3.82 6.30 86.42 0.54 4.37 16 9 C -0.09 -3.18 5.21 30.60 0.16 -3.02 16 10 C -0.08 -2.95 0.77 -52.04 -0.04 -2.99 16 11 C 0.13 5.03 7.72 86.32 0.67 5.69 16 12 N -0.64 -32.83 3.53 -722.66 -2.55 -35.38 16 13 C -0.23 -13.01 10.70 84.03 0.90 -12.11 16 14 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 16 N -0.95 -58.89 11.39 21.65 0.25 -58.64 16 17 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 21 C 0.17 8.00 6.64 86.32 0.57 8.57 16 22 C -0.11 -2.90 5.26 30.60 0.16 -2.74 16 23 C 0.11 2.28 6.19 86.42 0.54 2.81 16 24 H 0.07 1.50 7.98 -2.39 -0.02 1.48 16 25 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 26 H 0.06 1.56 6.28 -2.39 -0.01 1.54 16 27 H 0.08 0.54 7.82 -2.39 -0.02 0.52 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.16 2.00 5.89 -2.91 -0.02 1.98 16 31 H 0.08 2.51 6.97 -2.39 -0.02 2.50 16 32 H 0.07 2.14 7.50 -2.38 -0.02 2.12 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 2.25 8.01 -2.39 -0.02 2.23 16 35 H 0.05 1.82 8.07 -2.38 -0.02 1.80 16 36 H 0.05 1.80 7.41 -2.39 -0.02 1.78 16 37 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.03 1.75 7.12 -2.39 -0.02 1.73 16 39 H 0.02 0.83 8.09 -2.39 -0.02 0.82 16 40 H 0.09 2.11 8.12 -2.39 -0.02 2.09 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.12 1.60 5.39 -2.39 -0.01 1.59 16 43 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 Total: -1.00 -73.20 336.23 4.26 -68.94 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.98 Total: 9.98 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.03 Total: 4.95 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.73 Total: -112.43 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -73.20 4.26 -68.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035644072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.175 kcal (2) G-P(sol) polarization free energy of solvation -73.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds