Wall clock time and date at job start Tue Mar 31 2020 00:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50712 * 119.99794 * 2 1 4 4 C 1.32989 * 120.00364 * 179.97438 * 2 1 3 5 5 C 1.47102 * 119.99896 * 352.13305 * 4 2 1 6 6 O 1.21612 * 119.99851 * 353.23063 * 5 4 2 7 7 N 1.34772 * 119.99963 * 173.22185 * 5 4 2 8 8 C 1.46600 * 119.68287 * 174.31087 * 7 5 4 9 9 C 1.53952 * 110.57618 * 132.15550 * 8 7 5 10 10 C 1.51513 * 107.34835 * 51.05477 * 9 8 7 11 11 H 1.08998 * 109.28504 * 53.70259 * 10 9 8 12 12 C 1.55360 * 107.79048 * 295.13882 * 10 9 8 13 13 H 1.09001 * 111.51275 * 309.38674 * 12 10 9 14 14 C 1.53744 * 100.22284 * 191.48516 * 12 10 9 15 15 C 1.55281 * 101.87356 * 39.07975 * 14 12 10 16 16 N 1.45475 * 116.86890 * 178.39671 * 10 9 8 17 17 C 1.36934 * 126.40120 * 329.05210 * 16 10 9 18 18 H 1.08001 * 120.00495 * 0.02562 * 17 16 10 19 19 C 1.38814 * 119.99832 * 180.02562 * 17 16 10 20 20 N 1.31618 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00083 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46986 * 89.99698 * 21 19 17 23 23 H 1.48498 * 109.47227 * 210.00306 * 21 19 17 24 24 H 1.48508 * 109.46851 * 329.99797 * 21 19 17 25 25 C 1.48909 * 119.82520 * 354.60555 * 7 5 4 26 26 H 1.08990 * 109.47278 * 263.69217 * 1 2 3 27 27 H 1.09002 * 109.47001 * 23.69626 * 1 2 3 28 28 H 1.08998 * 109.46673 * 143.68832 * 1 2 3 29 29 H 1.08996 * 109.46804 * 269.99513 * 3 2 1 30 30 H 1.08996 * 109.47124 * 29.99563 * 3 2 1 31 31 H 1.08994 * 109.47033 * 149.99895 * 3 2 1 32 32 H 1.08001 * 120.00036 * 172.13488 * 4 2 1 33 33 H 1.08996 * 109.25450 * 11.87206 * 8 7 5 34 34 H 1.09001 * 109.22487 * 252.41880 * 8 7 5 35 35 H 1.09006 * 109.88181 * 291.59042 * 9 8 7 36 36 H 1.09006 * 109.94434 * 170.54671 * 9 8 7 37 37 H 1.09003 * 110.95631 * 157.23472 * 14 12 10 38 38 H 1.09002 * 110.95606 * 280.92097 * 14 12 10 39 39 H 1.08995 * 109.92376 * 96.88444 * 15 14 12 40 40 H 1.09008 * 109.91783 * 218.18856 * 15 14 12 41 41 H 0.97001 * 119.99689 * 179.97438 * 20 19 17 42 42 H 1.09006 * 110.80843 * 113.03134 * 25 7 5 43 43 H 1.09005 * 109.92027 * 351.07211 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4469 -2.4196 0.1755 6 8 0.2605 -2.4097 0.4421 7 7 2.0975 -3.5921 0.0401 8 6 1.4011 -4.8473 0.3379 9 6 1.6204 -5.8691 -0.7926 10 6 3.1119 -5.9484 -1.0470 11 1 3.6261 -6.1609 -0.1097 12 6 3.5763 -4.5658 -1.5823 13 1 2.9545 -4.2289 -2.4117 14 6 4.9956 -4.9194 -2.0559 15 6 4.7847 -6.3284 -2.6733 16 7 3.5565 -6.8901 -2.0627 17 6 2.9540 -8.0749 -2.3918 18 1 2.0575 -8.3863 -1.8763 19 6 3.4954 -8.8756 -3.3881 20 7 4.5882 -8.4964 -4.0160 21 14 2.6730 -10.4916 -3.8376 22 1 1.6759 -10.2572 -4.9127 23 1 3.6990 -11.4532 -4.3150 24 1 1.9905 -11.0490 -2.6423 25 6 3.5188 -3.6035 -0.4040 26 1 -0.3633 -0.1129 1.0213 27 1 -0.3633 0.9410 -0.4130 28 1 -0.3632 -0.8281 -0.6086 29 1 2.4422 1.6198 -1.0276 30 1 1.6714 2.0649 0.5137 31 1 3.2129 1.1749 0.5138 32 1 3.2444 -1.1561 -0.1275 33 1 0.3342 -4.6503 0.4425 34 1 1.7842 -5.2573 1.2723 35 1 1.1073 -5.5384 -1.6958 36 1 1.2437 -6.8459 -0.4892 37 1 5.3429 -4.2118 -2.8088 38 1 5.6879 -4.9618 -1.2150 39 1 4.6581 -6.2458 -3.7528 40 1 5.6390 -6.9658 -2.4446 41 1 4.9668 -9.0561 -4.7119 42 1 4.1717 -3.9525 0.3961 43 1 3.8165 -2.6043 -0.7222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036627499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:12 Heat of formation + Delta-G solvation = 10.221688 kcal Electronic energy + Delta-G solvation = -22442.328592 eV Core-core repulsion = 19295.560679 eV Total energy + Delta-G solvation = -3146.767912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.20108 -38.45250 -35.75721 -34.94902 -32.55974 -31.93148 -29.62541 -28.42000 -27.87085 -27.53521 -24.84264 -23.46748 -22.44448 -20.46177 -19.96515 -19.37598 -17.94158 -17.23602 -16.33649 -15.50393 -15.15314 -14.93987 -14.47890 -14.17872 -14.02616 -13.89171 -13.68747 -13.14114 -13.03770 -12.60760 -12.49213 -12.34315 -12.29866 -11.88684 -11.70521 -11.53875 -11.41673 -11.32603 -10.81634 -10.74826 -10.60551 -10.12325 -10.08919 -9.86622 -9.63671 -9.59897 -9.28916 -9.16652 -8.62460 -8.35089 -6.83558 -5.71511 -3.04344 1.35222 3.17628 3.39595 3.40553 3.45758 3.47157 4.49277 4.52882 4.71520 4.90950 5.03539 5.23513 5.26045 5.28390 5.37514 5.43627 5.51070 5.55996 5.61315 5.62668 5.65366 5.78060 5.84983 5.90392 5.97234 6.02701 6.14218 6.22511 6.28207 6.38448 6.42944 6.45815 6.53523 6.63253 6.68870 6.90681 7.08341 7.53962 7.59575 7.61223 7.80547 8.24477 8.37939 9.19915 9.83406 10.51110 11.41164 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031397 B = 0.004125 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.598965 B = 6787.056283 C = 7302.569855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.039 4.039 3 C -0.126 4.126 4 C -0.234 4.234 5 C 0.544 3.456 6 O -0.552 6.552 7 N -0.606 5.606 8 C 0.117 3.883 9 C -0.128 4.128 10 C 0.168 3.832 11 H 0.020 0.980 12 C -0.126 4.126 13 H 0.081 0.919 14 C -0.136 4.136 15 C 0.177 3.823 16 N -0.596 5.596 17 C -0.224 4.224 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.122 3.878 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 16.660 7.928 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.041 4.041 3 C -0.182 4.182 4 C -0.255 4.255 5 C 0.335 3.665 6 O -0.433 6.433 7 N -0.338 5.338 8 C -0.006 4.006 9 C -0.167 4.167 10 C 0.060 3.940 11 H 0.037 0.963 12 C -0.146 4.146 13 H 0.099 0.901 14 C -0.175 4.175 15 C 0.052 3.948 16 N -0.320 5.320 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.215 16.409 7.918 18.354 hybrid contribution -0.135 -1.023 -0.395 1.105 sum -2.350 15.386 7.524 17.288 Atomic orbital electron populations 1.21095 0.91006 1.02095 1.03530 1.22542 0.96835 0.94412 0.90324 1.20990 1.00026 0.94417 1.02799 1.22529 1.00507 0.92155 1.10261 1.18555 0.86510 0.84285 0.77130 1.90718 1.15243 1.87417 1.49903 1.48468 1.12900 1.05957 1.66521 1.21595 0.98098 0.83310 0.97624 1.21886 0.98636 0.98196 0.98011 1.20646 0.92449 0.88460 0.92472 0.96275 1.22650 0.98574 0.96593 0.96826 0.90108 1.22726 0.94749 1.00044 0.99993 1.21539 0.88829 0.87607 0.96799 1.44238 1.27729 1.19547 1.40509 1.19011 1.06751 0.94129 1.15379 0.90370 1.24785 0.97784 0.99003 0.98891 1.69936 1.21780 1.38035 1.27258 0.86150 0.78261 0.83272 0.78286 1.21654 1.21713 1.20700 1.22016 0.80820 1.00464 0.96689 0.90429 0.92917 0.89470 0.90525 0.91031 0.91156 0.85379 0.89442 0.92227 0.91551 0.90709 0.92098 0.92332 0.92723 0.94384 0.93799 0.90958 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.43 36.01 0.30 -1.06 16 2 C -0.04 -0.41 6.11 -101.16 -0.62 -1.03 16 3 C -0.13 -0.90 10.01 36.01 0.36 -0.54 16 4 C -0.23 -2.79 8.79 -37.81 -0.33 -3.12 16 5 C 0.54 8.26 7.45 -12.67 -0.09 8.17 16 6 O -0.55 -9.66 12.66 5.27 0.07 -9.60 16 7 N -0.61 -9.12 3.01 -172.88 -0.52 -9.64 16 8 C 0.12 1.84 6.35 -3.49 -0.02 1.81 16 9 C -0.13 -2.34 5.45 -26.99 -0.15 -2.49 16 10 C 0.17 3.37 2.57 -67.98 -0.17 3.20 16 11 H 0.02 0.41 7.93 -51.93 -0.41 -0.01 16 12 C -0.13 -2.15 2.84 -89.37 -0.25 -2.40 16 13 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 14 C -0.14 -2.39 6.53 -25.14 -0.16 -2.56 16 15 C 0.18 4.18 5.45 -1.89 -0.01 4.17 16 16 N -0.60 -14.88 3.35 -163.05 -0.55 -15.42 16 17 C -0.22 -6.16 9.86 -15.06 -0.15 -6.31 16 18 H 0.08 2.07 7.18 -52.49 -0.38 1.70 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.93 10.44 55.49 0.58 -26.35 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C 0.12 1.66 5.88 -3.09 -0.02 1.64 16 26 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 27 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.09 1.20 6.27 -51.93 -0.33 0.87 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.13 1.26 6.08 -52.49 -0.32 0.94 16 33 H 0.09 1.41 6.92 -51.93 -0.36 1.05 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.07 1.39 7.59 -51.93 -0.39 0.99 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.94 8.11 -51.93 -0.42 0.51 16 39 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 40 H 0.04 0.99 7.77 -51.92 -0.40 0.58 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.08 0.93 5.50 -51.93 -0.29 0.64 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -31.25 331.42 -8.88 -40.13 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.01 Total: -0.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.41 Total: -0.85 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.49 Total: -51.42 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.25 -8.88 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036627499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.350 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds