Wall clock time and date at job start Tue Mar 31 2020 00:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50703 * 119.99670 * 2 1 4 4 C 1.32991 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00163 * 0.02562 * 4 2 1 6 6 O 1.21617 * 119.99738 * 354.39178 * 5 4 2 7 7 N 1.34779 * 120.00252 * 174.40126 * 5 4 2 8 8 C 1.46528 * 120.97142 * 354.51372 * 7 5 4 9 9 C 1.51793 * 110.12824 * 233.77742 * 8 7 5 10 10 C 1.49517 * 115.06778 * 318.38733 * 9 8 7 11 11 H 1.08996 * 105.18725 * 156.93418 * 10 9 8 12 12 C 1.52638 * 117.06945 * 40.17755 * 10 9 8 13 13 H 1.08990 * 112.16772 * 83.01449 * 12 10 9 14 14 C 1.56116 * 101.81423 * 203.13808 * 12 10 9 15 15 C 1.55090 * 101.08604 * 37.62634 * 14 12 10 16 16 N 1.46261 * 114.16564 * 272.10365 * 10 9 8 17 17 C 1.36931 * 125.96718 * 315.60040 * 16 10 9 18 18 H 1.08002 * 119.99687 * 345.24011 * 17 16 10 19 19 C 1.38812 * 120.00205 * 165.22662 * 17 16 10 20 20 N 1.31611 * 120.00192 * 331.39477 * 19 17 16 21 21 Si 1.86804 * 119.99761 * 151.38934 * 19 17 16 22 22 H 1.48495 * 109.47184 * 270.00760 * 21 19 17 23 23 H 1.48499 * 109.46726 * 150.00193 * 21 19 17 24 24 H 1.48502 * 109.46912 * 30.00821 * 21 19 17 25 25 C 1.46161 * 120.96015 * 174.83355 * 7 5 4 26 26 H 1.08997 * 109.46890 * 239.99653 * 1 2 3 27 27 H 1.09004 * 109.46943 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46911 * 119.99804 * 1 2 3 29 29 H 1.08995 * 109.47585 * 269.99692 * 3 2 1 30 30 H 1.09002 * 109.47453 * 30.00393 * 3 2 1 31 31 H 1.09010 * 109.46689 * 149.99649 * 3 2 1 32 32 H 1.08003 * 119.99537 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.36161 * 113.58313 * 8 7 5 34 34 H 1.09000 * 109.36618 * 353.97889 * 8 7 5 35 35 H 1.08998 * 108.36297 * 196.93186 * 9 8 7 36 36 H 1.08996 * 108.36106 * 79.83324 * 9 8 7 37 37 H 1.09007 * 111.09446 * 279.67862 * 14 12 10 38 38 H 1.09002 * 111.10163 * 155.58686 * 14 12 10 39 39 H 1.09003 * 110.35639 * 204.08231 * 15 14 12 40 40 H 1.09001 * 110.44282 * 81.84694 * 15 14 12 41 41 H 0.97005 * 120.00121 * 356.21955 * 20 19 17 42 42 H 1.09001 * 109.51863 * 0.99641 * 25 7 5 43 43 H 1.09003 * 109.04023 * 241.08769 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0017 6 8 0.2247 -2.4282 0.1008 7 7 2.1056 -3.5900 -0.1160 8 6 3.5504 -3.6087 -0.3598 9 6 3.8634 -4.4560 -1.5797 10 6 3.0864 -5.7292 -1.6830 11 1 3.0998 -5.9867 -2.7420 12 6 1.6114 -5.6763 -1.2940 13 1 0.9835 -5.3183 -2.1098 14 6 1.3211 -7.1682 -0.9376 15 6 2.6475 -7.5724 -0.2429 16 7 3.7029 -6.8643 -0.9969 17 6 5.0278 -7.2075 -1.0408 18 1 5.6723 -6.7777 -1.7934 19 6 5.5426 -8.1076 -0.1180 20 7 5.0011 -8.2065 1.0775 21 14 7.0039 -9.1786 -0.5729 22 1 6.5197 -10.4491 -1.1699 23 1 7.7985 -9.4755 0.6460 24 1 7.8554 -8.4624 -1.5565 25 6 1.4099 -4.8708 -0.0075 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 2.4422 1.6199 -1.0276 30 1 1.6714 2.0648 0.5139 31 1 3.2129 1.1748 0.5139 32 1 3.2520 -1.1516 -0.0009 33 1 4.0582 -4.0259 0.5098 34 1 3.9019 -2.5906 -0.5271 35 1 4.9252 -4.7019 -1.5637 36 1 3.6667 -3.8604 -2.4711 37 1 1.1527 -7.7608 -1.8368 38 1 0.4779 -7.2509 -0.2517 39 1 2.7953 -8.6505 -0.3058 40 1 2.6452 -7.2509 0.7986 41 1 4.2779 -7.6126 1.3330 42 1 0.3457 -4.6951 0.1494 43 1 1.8170 -5.4261 0.8375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036627501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:20 Heat of formation + Delta-G solvation = 5.602286 kcal Electronic energy + Delta-G solvation = -22772.974020 eV Core-core repulsion = 19626.005795 eV Total energy + Delta-G solvation = -3146.968225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24505 -38.55332 -35.71523 -35.06098 -32.98725 -31.83268 -29.59959 -28.39869 -27.83641 -27.42100 -24.91381 -23.99873 -22.63478 -20.69712 -20.12796 -18.73739 -17.86199 -17.26394 -16.76281 -15.70837 -15.11328 -15.01117 -14.32520 -14.20975 -13.94601 -13.91358 -13.68860 -13.21019 -12.95816 -12.83267 -12.64546 -12.42367 -12.28260 -11.91310 -11.77489 -11.66978 -11.26846 -11.16738 -10.96474 -10.61815 -10.28133 -10.24029 -10.13671 -10.01905 -9.94001 -9.48205 -9.33230 -9.19088 -8.39069 -8.16391 -6.91176 -6.12125 -3.12878 1.39745 3.31499 3.45205 3.49939 3.52702 3.68432 4.56021 4.60029 4.73934 4.95261 5.12806 5.18706 5.24315 5.30274 5.31581 5.37115 5.44576 5.46520 5.57982 5.65274 5.68715 5.80831 5.82978 5.87597 5.96211 6.06578 6.14136 6.17660 6.26115 6.35667 6.42113 6.45586 6.53076 6.55207 6.76979 6.87115 6.92884 7.03158 7.05155 7.75495 7.80023 8.43471 8.47813 9.02288 9.81522 10.39906 11.22219 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.004570 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.208484 B = 6124.853621 C = 6681.020322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 C -0.125 4.125 4 C -0.231 4.231 5 C 0.545 3.455 6 O -0.554 6.554 7 N -0.599 5.599 8 C 0.117 3.883 9 C -0.134 4.134 10 C 0.171 3.829 11 H 0.008 0.992 12 C -0.105 4.105 13 H 0.079 0.921 14 C -0.133 4.133 15 C 0.142 3.858 16 N -0.592 5.592 17 C -0.334 4.334 18 H 0.066 0.934 19 C -0.025 4.025 20 N -0.917 5.917 21 Si 1.068 2.932 22 H -0.294 1.294 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.121 3.879 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.269 0.731 42 H 0.085 0.915 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 14.294 -2.893 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.044 4.044 3 C -0.182 4.182 4 C -0.252 4.252 5 C 0.337 3.663 6 O -0.435 6.435 7 N -0.330 5.330 8 C -0.006 4.006 9 C -0.174 4.174 10 C 0.064 3.936 11 H 0.026 0.974 12 C -0.125 4.125 13 H 0.097 0.903 14 C -0.172 4.172 15 C 0.016 3.984 16 N -0.318 5.318 17 C -0.462 4.462 18 H 0.084 0.916 19 C -0.227 4.227 20 N -0.559 5.559 21 Si 0.898 3.102 22 H -0.222 1.222 23 H -0.217 1.217 24 H -0.220 1.220 25 C -0.002 4.002 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.427 13.030 -2.311 14.303 hybrid contribution -0.638 1.143 -0.639 1.456 sum -6.065 14.173 -2.951 15.696 Atomic orbital electron populations 1.21016 0.90895 1.00686 1.04407 1.22541 0.96866 0.94391 0.90614 1.21000 1.00070 0.94336 1.02746 1.22523 1.00253 0.92075 1.10312 1.18500 0.86990 0.84171 0.76645 1.90721 1.13854 1.87346 1.51577 1.47710 1.09203 1.05779 1.70286 1.21351 0.79765 1.00167 0.99328 1.21218 1.03186 0.96777 0.96226 1.19482 0.89979 0.87942 0.96194 0.97425 1.22311 0.97138 0.95916 0.97144 0.90300 1.23084 0.98641 0.94780 1.00662 1.21646 0.86019 0.96805 0.93889 1.44683 1.04359 1.25161 1.57565 1.19677 0.84560 1.27937 1.13997 0.91621 1.25689 1.03706 1.00845 0.92411 1.70772 1.26307 1.42267 1.16506 0.83456 0.75263 0.76377 0.75080 1.22158 1.21729 1.21955 1.21519 0.97923 0.82939 0.97790 0.89712 0.93246 0.90349 0.90478 0.91115 0.91179 0.85482 0.91323 0.90488 0.89725 0.93335 0.91532 0.91581 0.93209 0.95563 0.91901 0.89690 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.33 36.01 0.30 -1.03 16 2 C -0.04 -0.48 6.11 -101.17 -0.62 -1.09 16 3 C -0.12 -0.98 9.98 36.01 0.36 -0.62 16 4 C -0.23 -3.01 8.85 -37.81 -0.33 -3.35 16 5 C 0.55 8.92 7.60 -12.67 -0.10 8.82 16 6 O -0.55 -10.11 12.54 5.26 0.07 -10.04 16 7 N -0.60 -10.08 2.94 -175.99 -0.52 -10.60 16 8 C 0.12 1.90 6.36 -4.64 -0.03 1.87 16 9 C -0.13 -2.43 5.60 -29.06 -0.16 -2.60 16 10 C 0.17 3.50 2.63 -69.97 -0.18 3.32 16 11 H 0.01 0.18 8.06 -51.93 -0.42 -0.24 16 12 C -0.11 -1.88 3.72 -89.08 -0.33 -2.21 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 14 C -0.13 -2.40 6.47 -23.96 -0.15 -2.56 16 15 C 0.14 3.23 4.85 -2.24 -0.01 3.22 16 16 N -0.59 -14.39 3.23 -165.71 -0.54 -14.93 16 17 C -0.33 -9.04 9.10 -15.06 -0.14 -9.17 16 18 H 0.07 1.78 7.65 -52.49 -0.40 1.38 16 19 C -0.02 -0.68 5.12 -17.43 -0.09 -0.77 16 20 N -0.92 -27.09 13.00 55.49 0.72 -26.37 16 21 Si 1.07 25.06 30.00 -169.99 -5.10 19.96 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.12 2.13 5.49 -4.16 -0.02 2.10 16 26 H 0.08 1.13 7.07 -51.93 -0.37 0.76 16 27 H 0.05 0.45 7.94 -51.93 -0.41 0.03 16 28 H 0.08 1.03 7.38 -51.93 -0.38 0.64 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 31 H 0.07 0.51 8.07 -51.92 -0.42 0.09 16 32 H 0.13 1.44 6.09 -52.48 -0.32 1.12 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.02 5.45 -51.93 -0.28 0.74 16 35 H 0.08 1.69 6.91 -51.93 -0.36 1.33 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.05 7.98 -51.93 -0.41 0.64 16 39 H 0.05 1.25 8.00 -51.93 -0.42 0.83 16 40 H 0.03 0.64 5.66 -51.93 -0.29 0.35 16 41 H 0.27 7.94 5.84 -40.82 -0.24 7.70 16 42 H 0.08 1.47 6.99 -51.93 -0.36 1.11 16 43 H 0.07 1.38 6.49 -51.93 -0.34 1.05 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -30.91 327.57 -8.69 -39.60 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.75 Total: 1.50 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.51 Total: -4.06 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.33 Total: -51.89 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.10 Total: 19.96 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.91 -8.69 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036627501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.204 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds