Wall clock time and date at job start Tue Mar 31 2020 00:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50703 * 119.99670 * 2 1 4 4 C 1.32991 * 120.00005 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00163 * 0.02562 * 4 2 1 6 6 O 1.21617 * 119.99738 * 354.39178 * 5 4 2 7 7 N 1.34779 * 120.00252 * 174.40126 * 5 4 2 8 8 C 1.46528 * 120.97142 * 354.51372 * 7 5 4 9 9 C 1.51793 * 110.12824 * 233.77742 * 8 7 5 10 10 C 1.49517 * 115.06778 * 318.38733 * 9 8 7 11 11 H 1.08996 * 105.18725 * 156.93418 * 10 9 8 12 12 C 1.52638 * 117.06945 * 40.17755 * 10 9 8 13 13 H 1.08990 * 112.16772 * 83.01449 * 12 10 9 14 14 C 1.56116 * 101.81423 * 203.13808 * 12 10 9 15 15 C 1.55090 * 101.08604 * 37.62634 * 14 12 10 16 16 N 1.46261 * 114.16564 * 272.10365 * 10 9 8 17 17 C 1.36931 * 125.96718 * 315.60040 * 16 10 9 18 18 H 1.08002 * 119.99687 * 345.24011 * 17 16 10 19 19 C 1.38812 * 120.00205 * 165.22662 * 17 16 10 20 20 N 1.31611 * 120.00192 * 331.39477 * 19 17 16 21 21 Si 1.86804 * 119.99761 * 151.38934 * 19 17 16 22 22 H 1.48495 * 109.47184 * 270.00760 * 21 19 17 23 23 H 1.48499 * 109.46726 * 150.00193 * 21 19 17 24 24 H 1.48502 * 109.46912 * 30.00821 * 21 19 17 25 25 C 1.46161 * 120.96015 * 174.83355 * 7 5 4 26 26 H 1.08997 * 109.46890 * 239.99653 * 1 2 3 27 27 H 1.09004 * 109.46943 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46911 * 119.99804 * 1 2 3 29 29 H 1.08995 * 109.47585 * 269.99692 * 3 2 1 30 30 H 1.09002 * 109.47453 * 30.00393 * 3 2 1 31 31 H 1.09010 * 109.46689 * 149.99649 * 3 2 1 32 32 H 1.08003 * 119.99537 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.36161 * 113.58313 * 8 7 5 34 34 H 1.09000 * 109.36618 * 353.97889 * 8 7 5 35 35 H 1.08998 * 108.36297 * 196.93186 * 9 8 7 36 36 H 1.08996 * 108.36106 * 79.83324 * 9 8 7 37 37 H 1.09007 * 111.09446 * 279.67862 * 14 12 10 38 38 H 1.09002 * 111.10163 * 155.58686 * 14 12 10 39 39 H 1.09003 * 110.35639 * 204.08231 * 15 14 12 40 40 H 1.09001 * 110.44282 * 81.84694 * 15 14 12 41 41 H 0.97005 * 120.00121 * 356.21955 * 20 19 17 42 42 H 1.09001 * 109.51863 * 0.99641 * 25 7 5 43 43 H 1.09003 * 109.04023 * 241.08769 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0017 6 8 0.2247 -2.4282 0.1008 7 7 2.1056 -3.5900 -0.1160 8 6 3.5504 -3.6087 -0.3598 9 6 3.8634 -4.4560 -1.5797 10 6 3.0864 -5.7292 -1.6830 11 1 3.0998 -5.9867 -2.7420 12 6 1.6114 -5.6763 -1.2940 13 1 0.9835 -5.3183 -2.1098 14 6 1.3211 -7.1682 -0.9376 15 6 2.6475 -7.5724 -0.2429 16 7 3.7029 -6.8643 -0.9969 17 6 5.0278 -7.2075 -1.0408 18 1 5.6723 -6.7777 -1.7934 19 6 5.5426 -8.1076 -0.1180 20 7 5.0011 -8.2065 1.0775 21 14 7.0039 -9.1786 -0.5729 22 1 6.5197 -10.4491 -1.1699 23 1 7.7985 -9.4755 0.6460 24 1 7.8554 -8.4624 -1.5565 25 6 1.4099 -4.8708 -0.0075 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 2.4422 1.6199 -1.0276 30 1 1.6714 2.0648 0.5139 31 1 3.2129 1.1748 0.5139 32 1 3.2520 -1.1516 -0.0009 33 1 4.0582 -4.0259 0.5098 34 1 3.9019 -2.5906 -0.5271 35 1 4.9252 -4.7019 -1.5637 36 1 3.6667 -3.8604 -2.4711 37 1 1.1527 -7.7608 -1.8368 38 1 0.4779 -7.2509 -0.2517 39 1 2.7953 -8.6505 -0.3058 40 1 2.6452 -7.2509 0.7986 41 1 4.2779 -7.6126 1.3330 42 1 0.3457 -4.6951 0.1494 43 1 1.8170 -5.4261 0.8375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036627501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:19 Heat of formation + Delta-G solvation = -12.178266 kcal Electronic energy + Delta-G solvation = -22773.745043 eV Core-core repulsion = 19626.005795 eV Total energy + Delta-G solvation = -3147.739247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63053 -40.01418 -37.02614 -36.23551 -34.82776 -33.41624 -31.26574 -29.84746 -28.74949 -28.60621 -26.55909 -25.67471 -24.15450 -22.03643 -21.81510 -20.23360 -19.36455 -18.60981 -18.25713 -17.15087 -16.60771 -16.31779 -15.88672 -15.74112 -15.36888 -15.08266 -14.97826 -14.80072 -14.35585 -14.20646 -14.07617 -13.46675 -13.34814 -13.19080 -13.04407 -12.90821 -12.67338 -12.59223 -12.45258 -12.30611 -11.99471 -11.84605 -11.83108 -11.69531 -11.56766 -11.33928 -10.57290 -10.46320 -10.17253 -9.53205 -8.93245 -8.29580 -5.26667 0.39874 1.58621 1.65918 1.82939 2.03771 2.25874 2.64850 3.24051 3.40762 3.57767 3.63424 3.76265 3.86409 3.92708 4.03350 4.15923 4.21694 4.31510 4.38085 4.44678 4.55201 4.57111 4.68369 4.70923 4.81205 4.81699 4.88430 4.91919 4.96725 5.01023 5.03468 5.09587 5.18643 5.26900 5.29078 5.30911 5.48359 5.55655 5.67361 5.73459 6.35586 6.47976 6.94608 7.17066 7.75141 8.36700 9.04754 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.004570 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.208484 B = 6124.853621 C = 6681.020322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.022 4.022 3 C -0.124 4.124 4 C -0.257 4.257 5 C 0.540 3.460 6 O -0.578 6.578 7 N -0.604 5.604 8 C 0.125 3.875 9 C -0.130 4.130 10 C 0.165 3.835 11 H -0.001 1.001 12 C -0.094 4.094 13 H 0.100 0.900 14 C -0.118 4.118 15 C 0.146 3.854 16 N -0.610 5.610 17 C -0.333 4.333 18 H 0.063 0.937 19 C -0.078 4.078 20 N -0.949 5.949 21 Si 1.116 2.884 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.127 3.873 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.041 0.959 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.017 0.983 40 H 0.006 0.994 41 H 0.256 0.744 42 H 0.089 0.911 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 16.741 -4.165 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.024 4.024 3 C -0.180 4.180 4 C -0.277 4.277 5 C 0.334 3.666 6 O -0.462 6.462 7 N -0.334 5.334 8 C 0.003 3.997 9 C -0.170 4.170 10 C 0.058 3.942 11 H 0.017 0.983 12 C -0.114 4.114 13 H 0.119 0.881 14 C -0.157 4.157 15 C 0.020 3.980 16 N -0.336 5.336 17 C -0.461 4.461 18 H 0.081 0.919 19 C -0.274 4.274 20 N -0.592 5.592 21 Si 0.942 3.058 22 H -0.217 1.217 23 H -0.223 1.223 24 H -0.196 1.196 25 C 0.003 3.997 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.035 0.965 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.586 15.512 -3.612 16.878 hybrid contribution -0.684 0.486 -0.269 0.881 sum -6.270 15.998 -3.881 17.616 Atomic orbital electron populations 1.21001 0.91486 1.02038 1.02644 1.22936 0.96736 0.95512 0.87178 1.21097 1.00259 0.92477 1.04150 1.22505 1.00981 0.90827 1.13406 1.19099 0.86922 0.84881 0.75668 1.90710 1.15010 1.87713 1.52721 1.47742 1.09232 1.05735 1.70730 1.21277 0.79492 1.01657 0.97293 1.21123 1.01294 0.96270 0.98304 1.19697 0.91636 0.87906 0.94939 0.98323 1.22274 0.95580 0.95685 0.97819 0.88142 1.23004 0.96679 0.94976 1.01022 1.21536 0.88287 0.94704 0.93445 1.44898 1.03946 1.27172 1.57585 1.19899 0.85856 1.27312 1.13053 0.91930 1.26968 1.06088 1.02258 0.92073 1.70881 1.27287 1.43178 1.17878 0.82808 0.72857 0.75153 0.75000 1.21665 1.22301 1.19570 1.21342 0.98096 0.83417 0.96795 0.91679 0.90305 0.91946 0.88765 0.89465 0.90189 0.83702 0.94006 0.86813 0.91865 0.90749 0.90559 0.89041 0.96480 0.97608 0.93334 0.89237 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.33 71.24 0.59 -1.86 16 2 C -0.02 -0.42 6.11 -17.61 -0.11 -0.53 16 3 C -0.12 -1.41 9.98 71.24 0.71 -0.70 16 4 C -0.26 -6.08 8.85 23.43 0.21 -5.88 16 5 C 0.54 17.01 7.60 86.57 0.66 17.67 16 6 O -0.58 -20.72 12.54 -4.08 -0.05 -20.77 16 7 N -0.60 -19.84 2.94 -828.94 -2.44 -22.28 16 8 C 0.13 3.98 6.36 85.98 0.55 4.53 16 9 C -0.13 -4.61 5.60 29.08 0.16 -4.45 16 10 C 0.16 6.68 2.63 43.80 0.12 6.79 16 11 H 0.00 -0.04 8.06 -2.39 -0.02 -0.06 16 12 C -0.09 -3.26 3.72 -9.79 -0.04 -3.30 16 13 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 14 C -0.12 -4.21 6.47 32.39 0.21 -4.00 16 15 C 0.15 6.88 4.85 86.85 0.42 7.30 16 16 N -0.61 -30.36 3.23 -678.20 -2.19 -32.56 16 17 C -0.33 -18.38 9.10 84.03 0.76 -17.62 16 18 H 0.06 3.43 7.65 -2.91 -0.02 3.41 16 19 C -0.08 -4.42 5.12 84.86 0.43 -3.99 16 20 N -0.95 -58.15 13.00 21.65 0.28 -57.87 16 21 Si 1.12 51.29 30.00 68.60 2.06 53.35 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.13 4.43 5.49 86.48 0.48 4.90 16 26 H 0.06 1.67 7.07 -2.39 -0.02 1.65 16 27 H 0.08 1.18 7.94 -2.38 -0.02 1.16 16 28 H 0.06 1.55 7.38 -2.39 -0.02 1.53 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.76 8.05 -2.39 -0.02 0.74 16 31 H 0.08 0.82 8.07 -2.38 -0.02 0.80 16 32 H 0.15 2.83 6.09 -2.91 -0.02 2.81 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 2.76 5.45 -2.39 -0.01 2.74 16 35 H 0.06 2.52 6.91 -2.39 -0.02 2.50 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 37 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.09 2.80 7.98 -2.39 -0.02 2.78 16 39 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 40 H 0.01 0.32 5.66 -2.39 -0.01 0.31 16 41 H 0.26 15.91 5.84 -92.70 -0.54 15.36 16 42 H 0.09 3.05 6.99 -2.39 -0.02 3.04 16 43 H 0.05 1.95 6.49 -2.39 -0.02 1.94 16 Total: -1.00 -69.38 327.57 4.03 -65.35 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.22 Total: 15.90 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 5.16 Total: -1.12 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.35 Total: -112.70 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.05 Total: -20.77 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.06 Total: 53.35 kcal Total: -69.38 4.03 -65.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036627501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.168 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds