Wall clock time and date at job start Tue Mar 31 2020 00:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99823 * 2 1 4 4 C 1.32985 * 119.99997 * 180.02562 * 2 1 3 5 5 C 1.47103 * 120.00111 * 352.03040 * 4 2 1 6 6 O 1.21616 * 119.99665 * 354.01939 * 5 4 2 7 7 N 1.34777 * 119.99825 * 174.02403 * 5 4 2 8 8 C 1.46939 * 120.44547 * 354.70894 * 7 5 4 9 9 C 1.54077 * 108.29874 * 125.71564 * 8 7 5 10 10 H 1.08999 * 111.01348 * 172.55904 * 9 8 7 11 11 C 1.53361 * 108.83940 * 294.51911 * 9 8 7 12 12 C 1.53017 * 109.25207 * 60.24462 * 11 9 8 13 13 C 1.54278 * 110.11663 * 60.58996 * 12 11 9 14 14 C 1.53372 * 108.61410 * 299.82918 * 13 12 11 15 15 H 1.08997 * 110.59561 * 177.51644 * 14 13 12 16 16 C 1.46948 * 120.43991 * 174.98705 * 7 5 4 17 17 N 1.47573 * 107.69419 * 51.34428 * 9 8 7 18 18 C 1.36934 * 121.61756 * 120.34880 * 17 9 8 19 19 H 1.07992 * 120.00119 * 140.70838 * 18 17 9 20 20 C 1.38814 * 119.99538 * 320.71789 * 18 17 9 21 21 N 1.31623 * 119.99999 * 349.21265 * 20 18 17 22 22 Si 1.86796 * 119.99825 * 169.21554 * 20 18 17 23 23 H 1.48492 * 109.47291 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47285 * 120.00019 * 22 20 18 25 25 H 1.48507 * 109.46894 * 239.99435 * 22 20 18 26 26 H 1.08999 * 109.46938 * 265.16133 * 1 2 3 27 27 H 1.09004 * 109.46872 * 25.15560 * 1 2 3 28 28 H 1.08992 * 109.47043 * 145.15278 * 1 2 3 29 29 H 1.09003 * 109.47186 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47350 * 300.00236 * 3 2 1 31 31 H 1.09001 * 109.47126 * 60.00085 * 3 2 1 32 32 H 1.08011 * 120.00016 * 172.02753 * 4 2 1 33 33 H 1.08998 * 109.62582 * 245.48531 * 8 7 5 34 34 H 1.09002 * 109.62242 * 6.05143 * 8 7 5 35 35 H 1.08998 * 109.51268 * 180.17978 * 11 9 8 36 36 H 1.08999 * 109.50686 * 300.27154 * 11 9 8 37 37 H 1.08998 * 109.41857 * 180.68240 * 12 11 9 38 38 H 1.08998 * 109.41774 * 300.55183 * 12 11 9 39 39 H 1.08999 * 110.32005 * 179.80430 * 13 12 11 40 40 H 1.08999 * 109.34952 * 59.27606 * 13 12 11 41 41 H 1.09005 * 109.62856 * 353.96496 * 16 7 5 42 42 H 1.08997 * 109.62952 * 114.34961 * 16 7 5 43 43 H 0.97000 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4471 -2.4196 0.1755 6 8 0.2579 -2.4098 0.4299 7 7 2.1010 -3.5919 0.0551 8 6 3.5087 -3.6195 -0.3650 9 6 4.3122 -4.4077 0.6872 10 1 5.3381 -4.5684 0.3558 11 6 4.2878 -3.6335 2.0108 12 6 2.8390 -3.4786 2.4781 13 6 2.2027 -4.8661 2.7025 14 6 2.2320 -5.6381 1.3776 15 1 1.8288 -6.6421 1.5098 16 6 1.4137 -4.8600 0.3363 17 7 3.6275 -5.6973 0.9010 18 6 4.2562 -6.8912 0.6680 19 1 4.0964 -7.7250 1.3355 20 6 5.0992 -7.0297 -0.4261 21 7 5.1326 -6.0963 -1.3535 22 14 6.1860 -8.5409 -0.5824 23 1 5.9631 -9.4336 0.5831 24 1 5.8487 -9.2661 -1.8336 25 1 7.6109 -8.1240 -0.6207 26 1 -0.3633 -0.0867 1.0240 27 1 -0.3633 0.9302 -0.4369 28 1 -0.3633 -0.8433 -0.5872 29 1 3.3322 1.1060 0.0005 30 1 1.9971 1.8768 -0.8899 31 1 1.9971 1.8767 0.8900 32 1 3.2442 -1.1562 -0.1303 33 1 3.5917 -4.1091 -1.3354 34 1 3.8908 -2.6009 -0.4320 35 1 4.8564 -4.1803 2.7630 36 1 4.7310 -2.6484 1.8646 37 1 2.8176 -2.9181 3.4127 38 1 2.2693 -2.9412 1.7201 39 1 1.1714 -4.7596 3.0388 40 1 2.7766 -5.4095 3.4531 41 1 0.4179 -4.6572 0.7304 42 1 1.3328 -5.4438 -0.5805 43 1 5.7213 -6.1933 -2.1183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039503202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:12 Heat of formation + Delta-G solvation = 26.843424 kcal Electronic energy + Delta-G solvation = -23724.445017 eV Core-core repulsion = 20578.397877 eV Total energy + Delta-G solvation = -3146.047140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48366 -37.92388 -35.19420 -33.74422 -32.83843 -31.87042 -30.23853 -28.24863 -27.65534 -26.34717 -25.40568 -23.51180 -21.71773 -21.29306 -20.15753 -18.34843 -17.79235 -17.07678 -16.06530 -15.19840 -14.85766 -14.70018 -14.12633 -13.84868 -13.75631 -13.54743 -13.31934 -12.98796 -12.75286 -12.52016 -12.22358 -12.21096 -12.07741 -11.91554 -11.58009 -11.50185 -11.13009 -10.99306 -10.81522 -10.68526 -10.33648 -10.12742 -10.10220 -10.04558 -9.50375 -9.39637 -8.97393 -8.89321 -8.58593 -7.65088 -6.43796 -5.89129 -3.42208 1.64189 3.31303 3.40237 3.42151 3.71643 3.72487 4.41715 4.89138 4.96950 5.18000 5.29859 5.37348 5.48179 5.53123 5.69856 5.75954 5.78075 5.79090 5.85649 5.92277 5.98656 6.03991 6.10185 6.23901 6.36252 6.42048 6.45255 6.54412 6.58132 6.66227 6.68426 6.73365 6.75404 6.80105 6.92247 7.10161 7.18381 7.25097 7.50857 7.76380 8.15852 8.43096 8.77036 9.12468 9.70043 10.40309 11.18853 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.005690 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.969426 B = 4919.637942 C = 5190.136293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.051 4.051 3 C -0.123 4.123 4 C -0.224 4.224 5 C 0.542 3.458 6 O -0.563 6.563 7 N -0.585 5.585 8 C 0.099 3.901 9 C 0.183 3.817 10 H 0.098 0.902 11 C -0.131 4.131 12 C -0.139 4.139 13 C -0.122 4.122 14 C 0.153 3.847 15 H 0.076 0.924 16 C 0.103 3.897 17 N -0.577 5.577 18 C -0.255 4.255 19 H 0.061 0.939 20 C 0.016 3.984 21 N -0.898 5.898 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.743 10.765 2.515 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.179 4.179 4 C -0.244 4.244 5 C 0.334 3.666 6 O -0.446 6.446 7 N -0.316 5.316 8 C -0.025 4.025 9 C 0.076 3.924 10 H 0.116 0.884 11 C -0.170 4.170 12 C -0.177 4.177 13 C -0.162 4.162 14 C 0.045 3.955 15 H 0.094 0.906 16 C -0.021 4.021 17 N -0.298 5.298 18 C -0.384 4.384 19 H 0.079 0.921 20 C -0.184 4.184 21 N -0.540 5.540 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.216 1.216 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.214 10.688 2.471 11.752 hybrid contribution 0.904 -0.829 -0.180 1.239 sum -3.310 9.860 2.292 10.650 Atomic orbital electron populations 1.21058 0.91169 1.01946 1.03327 1.22450 0.96697 0.94328 0.91866 1.20959 0.99914 0.94640 1.02411 1.22687 1.00608 0.92329 1.08781 1.18251 0.86507 0.84390 0.77420 1.90691 1.15129 1.87504 1.51266 1.48120 1.13206 1.05508 1.64726 1.22609 0.79089 0.99534 1.01236 1.20997 0.97154 0.84640 0.89624 0.88392 1.22092 0.95921 0.98753 1.00221 1.22309 0.97562 0.97405 1.00386 1.22138 0.98655 0.96720 0.98639 1.21266 0.86919 0.96373 0.90967 0.90589 1.22174 0.95839 0.84206 0.99879 1.44207 1.06605 1.01614 1.77409 1.19090 1.23704 0.90383 1.05259 0.92136 1.25299 1.01063 0.97413 0.94654 1.69906 1.39377 1.34409 1.10334 0.86230 0.80183 0.82753 0.77591 1.20213 1.21616 1.21564 0.90751 0.93294 0.89322 0.91497 0.91108 0.90804 0.85369 0.88954 0.91987 0.92904 0.93829 0.95160 0.89418 0.93391 0.92872 0.90670 0.91914 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.48 36.01 0.31 -1.29 16 2 C -0.05 -0.68 6.10 -101.17 -0.62 -1.30 16 3 C -0.12 -1.18 10.10 36.01 0.36 -0.82 16 4 C -0.22 -3.45 8.71 -37.81 -0.33 -3.78 16 5 C 0.54 10.10 4.94 -12.66 -0.06 10.03 16 6 O -0.56 -11.42 12.72 5.26 0.07 -11.35 16 7 N -0.58 -11.44 1.64 -173.34 -0.28 -11.72 16 8 C 0.10 1.98 5.76 -3.24 -0.02 1.96 16 9 C 0.18 3.97 2.61 -66.59 -0.17 3.80 16 10 H 0.10 2.38 6.65 -51.93 -0.35 2.03 16 11 C -0.13 -2.50 5.61 -26.54 -0.15 -2.65 16 12 C -0.14 -2.59 5.57 -26.05 -0.15 -2.74 16 13 C -0.12 -2.33 5.70 -25.87 -0.15 -2.47 16 14 C 0.15 3.17 3.58 -66.84 -0.24 2.94 16 15 H 0.08 1.57 8.01 -51.93 -0.42 1.15 16 16 C 0.10 2.09 5.87 -3.49 -0.02 2.07 16 17 N -0.58 -13.53 2.47 -155.15 -0.38 -13.91 16 18 C -0.25 -6.59 9.63 -15.06 -0.14 -6.74 16 19 H 0.06 1.58 7.85 -52.49 -0.41 1.17 16 20 C 0.02 0.41 5.07 -17.43 -0.09 0.32 16 21 N -0.90 -23.75 10.70 55.49 0.59 -23.15 16 22 Si 0.90 20.71 29.57 -169.99 -5.03 15.68 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 27 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.09 1.40 6.14 -51.93 -0.32 1.08 16 29 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.13 1.83 5.74 -52.48 -0.30 1.53 16 33 H 0.09 2.12 7.25 -51.93 -0.38 1.75 16 34 H 0.06 1.08 5.29 -51.93 -0.27 0.80 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.67 2.36 -52.48 -0.12 1.55 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.48 7.01 -51.93 -0.36 1.11 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -27.74 319.83 -8.37 -36.11 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.69 Total: 4.19 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.47 Total: -0.67 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.07 Total: -48.79 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.74 -8.37 -36.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039503202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.953 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds