Wall clock time and date at job start Tue Mar 31 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99823 * 2 1 4 4 C 1.32985 * 119.99997 * 180.02562 * 2 1 3 5 5 C 1.47103 * 120.00111 * 352.03040 * 4 2 1 6 6 O 1.21616 * 119.99665 * 354.01939 * 5 4 2 7 7 N 1.34777 * 119.99825 * 174.02403 * 5 4 2 8 8 C 1.46939 * 120.44547 * 354.70894 * 7 5 4 9 9 C 1.54077 * 108.29874 * 125.71564 * 8 7 5 10 10 H 1.08999 * 111.01348 * 172.55904 * 9 8 7 11 11 C 1.53361 * 108.83940 * 294.51911 * 9 8 7 12 12 C 1.53017 * 109.25207 * 60.24462 * 11 9 8 13 13 C 1.54278 * 110.11663 * 60.58996 * 12 11 9 14 14 C 1.53372 * 108.61410 * 299.82918 * 13 12 11 15 15 H 1.08997 * 110.59561 * 177.51644 * 14 13 12 16 16 C 1.46948 * 120.43991 * 174.98705 * 7 5 4 17 17 N 1.47573 * 107.69419 * 51.34428 * 9 8 7 18 18 C 1.36934 * 121.61756 * 120.34880 * 17 9 8 19 19 H 1.07992 * 120.00119 * 140.70838 * 18 17 9 20 20 C 1.38814 * 119.99538 * 320.71789 * 18 17 9 21 21 N 1.31623 * 119.99999 * 349.21265 * 20 18 17 22 22 Si 1.86796 * 119.99825 * 169.21554 * 20 18 17 23 23 H 1.48492 * 109.47291 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47285 * 120.00019 * 22 20 18 25 25 H 1.48507 * 109.46894 * 239.99435 * 22 20 18 26 26 H 1.08999 * 109.46938 * 265.16133 * 1 2 3 27 27 H 1.09004 * 109.46872 * 25.15560 * 1 2 3 28 28 H 1.08992 * 109.47043 * 145.15278 * 1 2 3 29 29 H 1.09003 * 109.47186 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47350 * 300.00236 * 3 2 1 31 31 H 1.09001 * 109.47126 * 60.00085 * 3 2 1 32 32 H 1.08011 * 120.00016 * 172.02753 * 4 2 1 33 33 H 1.08998 * 109.62582 * 245.48531 * 8 7 5 34 34 H 1.09002 * 109.62242 * 6.05143 * 8 7 5 35 35 H 1.08998 * 109.51268 * 180.17978 * 11 9 8 36 36 H 1.08999 * 109.50686 * 300.27154 * 11 9 8 37 37 H 1.08998 * 109.41857 * 180.68240 * 12 11 9 38 38 H 1.08998 * 109.41774 * 300.55183 * 12 11 9 39 39 H 1.08999 * 110.32005 * 179.80430 * 13 12 11 40 40 H 1.08999 * 109.34952 * 59.27606 * 13 12 11 41 41 H 1.09005 * 109.62856 * 353.96496 * 16 7 5 42 42 H 1.08997 * 109.62952 * 114.34961 * 16 7 5 43 43 H 0.97000 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1719 -1.1517 -0.0005 5 6 1.4471 -2.4196 0.1755 6 8 0.2579 -2.4098 0.4299 7 7 2.1010 -3.5919 0.0551 8 6 3.5087 -3.6195 -0.3650 9 6 4.3122 -4.4077 0.6872 10 1 5.3381 -4.5684 0.3558 11 6 4.2878 -3.6335 2.0108 12 6 2.8390 -3.4786 2.4781 13 6 2.2027 -4.8661 2.7025 14 6 2.2320 -5.6381 1.3776 15 1 1.8288 -6.6421 1.5098 16 6 1.4137 -4.8600 0.3363 17 7 3.6275 -5.6973 0.9010 18 6 4.2562 -6.8912 0.6680 19 1 4.0964 -7.7250 1.3355 20 6 5.0992 -7.0297 -0.4261 21 7 5.1326 -6.0963 -1.3535 22 14 6.1860 -8.5409 -0.5824 23 1 5.9631 -9.4336 0.5831 24 1 5.8487 -9.2661 -1.8336 25 1 7.6109 -8.1240 -0.6207 26 1 -0.3633 -0.0867 1.0240 27 1 -0.3633 0.9302 -0.4369 28 1 -0.3633 -0.8433 -0.5872 29 1 3.3322 1.1060 0.0005 30 1 1.9971 1.8768 -0.8899 31 1 1.9971 1.8767 0.8900 32 1 3.2442 -1.1562 -0.1303 33 1 3.5917 -4.1091 -1.3354 34 1 3.8908 -2.6009 -0.4320 35 1 4.8564 -4.1803 2.7630 36 1 4.7310 -2.6484 1.8646 37 1 2.8176 -2.9181 3.4127 38 1 2.2693 -2.9412 1.7201 39 1 1.1714 -4.7596 3.0388 40 1 2.7766 -5.4095 3.4531 41 1 0.4179 -4.6572 0.7304 42 1 1.3328 -5.4438 -0.5805 43 1 5.7213 -6.1933 -2.1183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039503202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:11 Heat of formation + Delta-G solvation = 13.348253 kcal Electronic energy + Delta-G solvation = -23725.030212 eV Core-core repulsion = 20578.397877 eV Total energy + Delta-G solvation = -3146.632334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01506 -39.43255 -36.34509 -35.44203 -34.54530 -33.48914 -32.04571 -29.55669 -28.59912 -27.93653 -26.93708 -25.31658 -23.29433 -22.90918 -21.55562 -20.04795 -19.18437 -18.49217 -17.74113 -16.83306 -16.43329 -16.30073 -15.75013 -15.23878 -15.12601 -14.91514 -14.71648 -14.44352 -14.23942 -14.06169 -13.84653 -13.49242 -13.26762 -13.11913 -13.04637 -12.83170 -12.77681 -12.56886 -12.42152 -12.25022 -11.99879 -11.93622 -11.69597 -11.65144 -11.14135 -11.01319 -10.62918 -10.34011 -10.02698 -9.28973 -8.27296 -7.84467 -5.41012 0.47576 1.46621 1.50550 1.58959 2.21929 2.34909 2.52517 3.30775 3.52750 3.71717 3.96417 4.09809 4.20449 4.22389 4.25393 4.30779 4.45127 4.57826 4.59890 4.66332 4.75508 4.79088 4.83138 4.86373 4.91880 4.97330 5.02076 5.03968 5.11709 5.16194 5.22031 5.27088 5.32383 5.48237 5.51275 5.59454 5.65829 5.67950 5.74470 5.89373 6.47591 6.67272 7.20052 7.30628 7.80751 8.48263 9.19370 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.005690 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.969426 B = 4919.637942 C = 5190.136293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.122 4.122 4 C -0.255 4.255 5 C 0.540 3.460 6 O -0.584 6.584 7 N -0.590 5.590 8 C 0.113 3.887 9 C 0.181 3.819 10 H 0.068 0.932 11 C -0.121 4.121 12 C -0.136 4.136 13 C -0.115 4.115 14 C 0.148 3.852 15 H 0.070 0.930 16 C 0.111 3.889 17 N -0.592 5.592 18 C -0.268 4.268 19 H 0.052 0.948 20 C -0.025 4.025 21 N -0.914 5.914 22 Si 0.961 3.039 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.289 1.289 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 13.176 3.204 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.027 4.027 3 C -0.178 4.178 4 C -0.276 4.276 5 C 0.335 3.665 6 O -0.468 6.468 7 N -0.321 5.321 8 C -0.011 4.011 9 C 0.074 3.926 10 H 0.086 0.914 11 C -0.160 4.160 12 C -0.174 4.174 13 C -0.154 4.154 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.014 4.014 17 N -0.314 5.314 18 C -0.399 4.399 19 H 0.069 0.931 20 C -0.223 4.223 21 N -0.558 5.558 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.220 1.220 25 H -0.215 1.215 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.164 13.117 3.174 14.123 hybrid contribution 0.776 -1.504 -0.403 1.739 sum -3.388 11.613 2.771 12.410 Atomic orbital electron populations 1.21051 0.91519 1.02420 1.02741 1.22884 0.96717 0.95374 0.87697 1.21070 0.99931 0.92655 1.04170 1.22597 1.01073 0.91232 1.12680 1.18805 0.86362 0.84929 0.76364 1.90682 1.16112 1.87828 1.52223 1.48101 1.12940 1.05615 1.65462 1.22328 0.79401 1.00491 0.98851 1.20959 0.95646 0.84542 0.91439 0.91399 1.21965 0.96453 0.99422 0.98135 1.22287 0.96926 0.97071 1.01138 1.22053 0.99531 0.96748 0.97106 1.21350 0.85798 0.96647 0.92111 0.91235 1.21952 0.96134 0.84670 0.98609 1.44368 1.07674 1.01602 1.77732 1.19243 1.24167 0.91263 1.05189 0.93067 1.25876 1.02245 0.99676 0.94524 1.70034 1.39749 1.35507 1.10493 0.85333 0.78519 0.80072 0.77139 1.19883 1.22036 1.21529 0.91207 0.90161 0.92083 0.90655 0.89075 0.88922 0.84180 0.92464 0.89017 0.93923 0.91226 0.93478 0.89463 0.91992 0.93301 0.90109 0.94255 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.48 71.24 0.60 -2.34 16 2 C -0.02 -0.58 6.10 -17.62 -0.11 -0.68 16 3 C -0.12 -1.79 10.10 71.24 0.72 -1.07 16 4 C -0.26 -7.30 8.71 23.43 0.20 -7.10 16 5 C 0.54 19.63 4.94 86.57 0.43 20.05 16 6 O -0.58 -23.34 12.72 -4.08 -0.05 -23.39 16 7 N -0.59 -23.04 1.64 -820.56 -1.34 -24.38 16 8 C 0.11 4.53 5.76 86.66 0.50 5.03 16 9 C 0.18 7.90 2.61 45.27 0.12 8.02 16 10 H 0.07 3.37 6.65 -2.39 -0.02 3.35 16 11 C -0.12 -4.45 5.61 30.72 0.17 -4.28 16 12 C -0.14 -4.84 5.57 31.03 0.17 -4.67 16 13 C -0.12 -4.29 5.70 31.15 0.18 -4.11 16 14 C 0.15 6.26 3.58 45.11 0.16 6.42 16 15 H 0.07 2.96 8.01 -2.39 -0.02 2.94 16 16 C 0.11 4.59 5.87 86.49 0.51 5.10 16 17 N -0.59 -28.32 2.47 -644.76 -1.59 -29.92 16 18 C -0.27 -14.24 9.63 84.03 0.81 -13.43 16 19 H 0.05 2.76 7.85 -2.91 -0.02 2.73 16 20 C -0.03 -1.33 5.07 84.86 0.43 -0.90 16 21 N -0.91 -49.62 10.70 21.65 0.23 -49.39 16 22 Si 0.96 43.34 29.57 68.60 2.03 45.37 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 26 H 0.07 1.79 8.04 -2.39 -0.02 1.78 16 27 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 28 H 0.06 1.86 6.14 -2.39 -0.01 1.85 16 29 H 0.07 1.03 7.82 -2.39 -0.02 1.01 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.14 3.60 5.74 -2.91 -0.02 3.58 16 33 H 0.06 2.71 7.25 -2.39 -0.02 2.69 16 34 H 0.09 3.08 5.29 -2.39 -0.01 3.07 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 3.18 2.36 -3.48 -0.01 3.17 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 3.21 7.01 -2.38 -0.02 3.19 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -60.68 319.83 5.16 -55.52 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.99 Total: 20.14 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 4.90 Total: 6.05 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -2.70 Total: -103.69 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -60.68 5.16 -55.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039503202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.868 kcal (2) G-P(sol) polarization free energy of solvation -60.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds