Wall clock time and date at job start Tue Mar 31 2020 00:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50702 * 120.00074 * 2 1 4 4 C 1.32996 * 120.00195 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99828 * 351.72062 * 4 2 1 6 6 O 1.21610 * 119.99727 * 353.37831 * 5 4 2 7 7 N 1.34776 * 119.99724 * 173.37588 * 5 4 2 8 8 C 1.46599 * 119.74947 * 175.60095 * 7 5 4 9 9 C 1.53884 * 110.70943 * 132.27822 * 8 7 5 10 10 C 1.51978 * 107.28940 * 51.81241 * 9 8 7 11 11 H 1.08995 * 111.01232 * 56.51093 * 10 9 8 12 12 C 1.53698 * 115.61332 * 184.24658 * 10 9 8 13 13 C 1.55348 * 101.90368 * 153.51404 * 12 10 9 14 14 N 1.48162 * 107.01559 * 337.90317 * 13 12 10 15 15 C 1.36940 * 126.39790 * 174.88963 * 14 13 12 16 16 H 1.07996 * 119.99667 * 186.78944 * 15 14 13 17 17 C 1.38813 * 119.99649 * 6.77958 * 15 14 13 18 18 N 1.31615 * 120.00398 * 353.85663 * 17 15 14 19 19 Si 1.86803 * 119.99393 * 174.12620 * 17 15 14 20 20 H 1.48498 * 109.47084 * 274.73863 * 19 17 15 21 21 H 1.48499 * 109.47310 * 34.74146 * 19 17 15 22 22 H 1.48506 * 109.46782 * 154.74217 * 19 17 15 23 23 C 1.45505 * 107.20271 * 354.62634 * 14 13 12 24 24 H 1.08999 * 109.57241 * 273.61377 * 23 14 13 25 25 C 1.46255 * 120.15409 * 355.72779 * 7 5 4 26 26 H 1.09002 * 109.46999 * 263.38616 * 1 2 3 27 27 H 1.09002 * 109.47283 * 23.38025 * 1 2 3 28 28 H 1.08997 * 109.47293 * 143.38939 * 1 2 3 29 29 H 1.09000 * 109.47487 * 270.00259 * 3 2 1 30 30 H 1.09006 * 109.47023 * 30.00784 * 3 2 1 31 31 H 1.08997 * 109.47040 * 150.00322 * 3 2 1 32 32 H 1.07998 * 120.00247 * 171.71671 * 4 2 1 33 33 H 1.09003 * 109.22822 * 11.96001 * 8 7 5 34 34 H 1.09003 * 109.19716 * 252.57415 * 8 7 5 35 35 H 1.08997 * 109.89089 * 292.36605 * 9 8 7 36 36 H 1.08999 * 109.89361 * 171.25882 * 9 8 7 37 37 H 1.09001 * 110.95734 * 271.84726 * 12 10 9 38 38 H 1.08997 * 110.96256 * 35.54739 * 12 10 9 39 39 H 1.09004 * 110.04056 * 218.50575 * 13 12 10 40 40 H 1.08998 * 109.82883 * 97.17868 * 13 12 10 41 41 H 0.96997 * 120.00030 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.63467 * 112.22452 * 25 7 5 43 43 H 1.09000 * 109.72708 * 351.15105 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4480 -2.4191 0.1824 6 8 0.2626 -2.4085 0.4537 7 7 2.0984 -3.5920 0.0492 8 6 1.3965 -4.8487 0.3270 9 6 1.6330 -5.8655 -0.8036 10 6 3.1343 -5.9593 -1.0200 11 1 3.6460 -6.2313 -0.0969 12 6 3.5829 -6.8546 -2.1860 13 6 4.9494 -6.2223 -2.5682 14 7 4.9364 -4.8273 -2.0690 15 6 5.9801 -3.9415 -2.1055 16 1 5.8930 -2.9840 -1.6135 17 6 7.1498 -4.2743 -2.7747 18 7 7.3033 -5.4841 -3.2699 19 14 8.5092 -3.0075 -2.9657 20 1 8.2393 -2.1681 -4.1606 21 1 8.5571 -2.1466 -1.7566 22 1 9.8120 -3.7007 -3.1318 23 6 3.6057 -4.5725 -1.5385 24 1 2.9490 -4.2417 -2.3431 25 6 3.5000 -3.6116 -0.3683 26 1 -0.3633 -0.1184 1.0208 27 1 -0.3634 0.9433 -0.4078 28 1 -0.3634 -0.8249 -0.6128 29 1 2.4421 1.6198 -1.0276 30 1 1.6714 2.0648 0.5140 31 1 3.2129 1.1747 0.5138 32 1 3.2435 -1.1566 -0.1353 33 1 0.3281 -4.6514 0.4147 34 1 1.7631 -5.2640 1.2658 35 1 1.1471 -5.5237 -1.7174 36 1 1.2383 -6.8397 -0.5148 37 1 3.7061 -7.8873 -1.8596 38 1 2.8816 -6.7918 -3.0180 39 1 5.0738 -6.2280 -3.6511 40 1 5.7592 -6.7782 -2.0956 41 1 8.1205 -5.7165 -3.7378 42 1 4.1230 -3.9569 0.4566 43 1 3.8060 -2.6119 -0.6765 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041904556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:53 Heat of formation + Delta-G solvation = 8.616546 kcal Electronic energy + Delta-G solvation = -22677.645542 eV Core-core repulsion = 19530.808026 eV Total energy + Delta-G solvation = -3146.837517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.24160 -38.43410 -35.72873 -34.89423 -33.08993 -31.45242 -29.39607 -28.65191 -27.83140 -27.52955 -24.63947 -23.75103 -22.33672 -20.44493 -19.94013 -19.40166 -17.84427 -17.12185 -16.57277 -15.32739 -15.11344 -14.91720 -14.32891 -14.15305 -14.04112 -13.79295 -13.62996 -13.23802 -13.11860 -12.58694 -12.40678 -12.24319 -12.07737 -11.89617 -11.67645 -11.62058 -11.41535 -11.25638 -10.91406 -10.81357 -10.69210 -10.19135 -9.98808 -9.82946 -9.75664 -9.57642 -9.22662 -9.03512 -8.64926 -8.26101 -6.87671 -5.77252 -3.10319 1.47302 3.29249 3.36922 3.42071 3.43786 3.48427 4.45071 4.68833 4.86400 4.98550 5.08921 5.20949 5.28290 5.39957 5.44362 5.47227 5.59361 5.64245 5.67894 5.75734 5.80046 5.82205 5.86797 5.91513 6.04770 6.07898 6.12962 6.19579 6.26378 6.28861 6.50308 6.55447 6.57707 6.60942 6.70168 6.86524 7.05757 7.50766 7.58168 7.71021 7.76881 8.19267 8.44650 9.13887 9.77697 10.46337 11.35702 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.006132 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.555982 B = 4564.977670 C = 6240.276184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C -0.126 4.126 4 C -0.232 4.232 5 C 0.547 3.453 6 O -0.555 6.555 7 N -0.600 5.600 8 C 0.112 3.888 9 C -0.118 4.118 10 C -0.112 4.112 11 H 0.075 0.925 12 C -0.138 4.138 13 C 0.178 3.822 14 N -0.592 5.592 15 C -0.232 4.232 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.908 3.092 20 H -0.288 1.288 21 H -0.281 1.281 22 H -0.291 1.291 23 C 0.155 3.845 24 H 0.026 0.974 25 C 0.108 3.892 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.253 0.747 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 5.322 6.305 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.042 4.042 3 C -0.183 4.183 4 C -0.253 4.253 5 C 0.339 3.661 6 O -0.436 6.436 7 N -0.332 5.332 8 C -0.010 4.010 9 C -0.157 4.157 10 C -0.132 4.132 11 H 0.094 0.906 12 C -0.176 4.176 13 C 0.054 3.946 14 N -0.317 5.317 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.200 4.200 18 N -0.564 5.564 19 Si 0.738 3.262 20 H -0.215 1.215 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.046 3.954 24 H 0.043 0.957 25 C -0.015 4.015 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.962 5.304 6.360 13.738 hybrid contribution 1.093 0.513 -0.243 1.231 sum -9.869 5.817 6.117 12.987 Atomic orbital electron populations 1.21067 0.91104 1.01910 1.03385 1.22515 0.96683 0.94455 0.90574 1.20991 1.00087 0.94297 1.02888 1.22574 1.00935 0.91997 1.09777 1.18550 0.86343 0.84278 0.76898 1.90696 1.15312 1.87517 1.50111 1.47749 1.12810 1.05740 1.66908 1.21536 0.98157 0.83815 0.97514 1.21781 0.96897 0.98322 0.98667 1.22266 0.94110 0.97985 0.98865 0.90613 1.22725 0.99840 0.98115 0.96944 1.21545 0.91240 0.83771 0.98072 1.44154 1.06804 1.10758 1.70021 1.18962 0.92030 0.96362 1.28617 0.90434 1.24807 0.98251 0.96834 1.00146 1.69948 1.26907 1.17658 1.41916 0.86208 0.81422 0.80558 0.77996 1.21517 1.20705 1.21699 1.20983 0.89084 0.92603 0.92743 0.95661 1.21644 0.79869 1.01966 0.98056 0.90528 0.92969 0.89675 0.90473 0.91124 0.91050 0.85056 0.89477 0.92201 0.91553 0.91015 0.92244 0.92565 0.94015 0.93208 0.93665 0.91265 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.42 36.00 0.30 -1.15 16 2 C -0.04 -0.50 6.10 -101.17 -0.62 -1.12 16 3 C -0.13 -1.19 10.01 36.01 0.36 -0.83 16 4 C -0.23 -3.35 8.80 -37.80 -0.33 -3.68 16 5 C 0.55 9.04 7.45 -12.66 -0.09 8.95 16 6 O -0.55 -9.94 12.67 5.27 0.07 -9.88 16 7 N -0.60 -9.74 2.98 -175.39 -0.52 -10.26 16 8 C 0.11 1.64 6.34 -3.53 -0.02 1.62 16 9 C -0.12 -1.69 5.76 -26.79 -0.15 -1.85 16 10 C -0.11 -1.94 2.58 -89.51 -0.23 -2.17 16 11 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 12 C -0.14 -2.53 6.56 -25.12 -0.16 -2.69 16 13 C 0.18 4.21 5.44 -1.88 -0.01 4.20 16 14 N -0.59 -14.44 3.35 -162.86 -0.54 -14.98 16 15 C -0.23 -6.12 9.89 -15.06 -0.15 -6.27 16 16 H 0.08 1.94 7.38 -52.49 -0.39 1.56 16 17 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 18 N -0.92 -26.30 10.49 55.49 0.58 -25.72 16 19 Si 0.91 21.43 29.56 -169.99 -5.02 16.41 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.15 3.10 2.80 -67.82 -0.19 2.91 16 24 H 0.03 0.56 7.94 -51.93 -0.41 0.14 16 25 C 0.11 1.90 5.42 -4.79 -0.03 1.87 16 26 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 27 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.08 1.23 6.32 -51.93 -0.33 0.90 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 31 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.13 1.82 6.07 -52.49 -0.32 1.50 16 33 H 0.09 1.28 6.93 -51.93 -0.36 0.92 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 40 H 0.05 1.30 7.44 -51.93 -0.39 0.91 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.48 5.17 -51.93 -0.27 1.21 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -29.84 331.79 -8.90 -38.74 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.04 Total: 1.11 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.42 Total: -0.43 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.49 Total: -50.96 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.84 -8.90 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.361 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds