Wall clock time and date at job start Tue Mar 31 2020 00:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50702 * 120.00074 * 2 1 4 4 C 1.32996 * 120.00195 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99828 * 351.72062 * 4 2 1 6 6 O 1.21610 * 119.99727 * 353.37831 * 5 4 2 7 7 N 1.34776 * 119.99724 * 173.37588 * 5 4 2 8 8 C 1.46599 * 119.74947 * 175.60095 * 7 5 4 9 9 C 1.53884 * 110.70943 * 132.27822 * 8 7 5 10 10 C 1.51978 * 107.28940 * 51.81241 * 9 8 7 11 11 H 1.08995 * 111.01232 * 56.51093 * 10 9 8 12 12 C 1.53698 * 115.61332 * 184.24658 * 10 9 8 13 13 C 1.55348 * 101.90368 * 153.51404 * 12 10 9 14 14 N 1.48162 * 107.01559 * 337.90317 * 13 12 10 15 15 C 1.36940 * 126.39790 * 174.88963 * 14 13 12 16 16 H 1.07996 * 119.99667 * 186.78944 * 15 14 13 17 17 C 1.38813 * 119.99649 * 6.77958 * 15 14 13 18 18 N 1.31615 * 120.00398 * 353.85663 * 17 15 14 19 19 Si 1.86803 * 119.99393 * 174.12620 * 17 15 14 20 20 H 1.48498 * 109.47084 * 274.73863 * 19 17 15 21 21 H 1.48499 * 109.47310 * 34.74146 * 19 17 15 22 22 H 1.48506 * 109.46782 * 154.74217 * 19 17 15 23 23 C 1.45505 * 107.20271 * 354.62634 * 14 13 12 24 24 H 1.08999 * 109.57241 * 273.61377 * 23 14 13 25 25 C 1.46255 * 120.15409 * 355.72779 * 7 5 4 26 26 H 1.09002 * 109.46999 * 263.38616 * 1 2 3 27 27 H 1.09002 * 109.47283 * 23.38025 * 1 2 3 28 28 H 1.08997 * 109.47293 * 143.38939 * 1 2 3 29 29 H 1.09000 * 109.47487 * 270.00259 * 3 2 1 30 30 H 1.09006 * 109.47023 * 30.00784 * 3 2 1 31 31 H 1.08997 * 109.47040 * 150.00322 * 3 2 1 32 32 H 1.07998 * 120.00247 * 171.71671 * 4 2 1 33 33 H 1.09003 * 109.22822 * 11.96001 * 8 7 5 34 34 H 1.09003 * 109.19716 * 252.57415 * 8 7 5 35 35 H 1.08997 * 109.89089 * 292.36605 * 9 8 7 36 36 H 1.08999 * 109.89361 * 171.25882 * 9 8 7 37 37 H 1.09001 * 110.95734 * 271.84726 * 12 10 9 38 38 H 1.08997 * 110.96256 * 35.54739 * 12 10 9 39 39 H 1.09004 * 110.04056 * 218.50575 * 13 12 10 40 40 H 1.08998 * 109.82883 * 97.17868 * 13 12 10 41 41 H 0.96997 * 120.00030 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.63467 * 112.22452 * 25 7 5 43 43 H 1.09000 * 109.72708 * 351.15105 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4480 -2.4191 0.1824 6 8 0.2626 -2.4085 0.4537 7 7 2.0984 -3.5920 0.0492 8 6 1.3965 -4.8487 0.3270 9 6 1.6330 -5.8655 -0.8036 10 6 3.1343 -5.9593 -1.0200 11 1 3.6460 -6.2313 -0.0969 12 6 3.5829 -6.8546 -2.1860 13 6 4.9494 -6.2223 -2.5682 14 7 4.9364 -4.8273 -2.0690 15 6 5.9801 -3.9415 -2.1055 16 1 5.8930 -2.9840 -1.6135 17 6 7.1498 -4.2743 -2.7747 18 7 7.3033 -5.4841 -3.2699 19 14 8.5092 -3.0075 -2.9657 20 1 8.2393 -2.1681 -4.1606 21 1 8.5571 -2.1466 -1.7566 22 1 9.8120 -3.7007 -3.1318 23 6 3.6057 -4.5725 -1.5385 24 1 2.9490 -4.2417 -2.3431 25 6 3.5000 -3.6116 -0.3683 26 1 -0.3633 -0.1184 1.0208 27 1 -0.3634 0.9433 -0.4078 28 1 -0.3634 -0.8249 -0.6128 29 1 2.4421 1.6198 -1.0276 30 1 1.6714 2.0648 0.5140 31 1 3.2129 1.1747 0.5138 32 1 3.2435 -1.1566 -0.1353 33 1 0.3281 -4.6514 0.4147 34 1 1.7631 -5.2640 1.2658 35 1 1.1471 -5.5237 -1.7174 36 1 1.2383 -6.8397 -0.5148 37 1 3.7061 -7.8873 -1.8596 38 1 2.8816 -6.7918 -3.0180 39 1 5.0738 -6.2280 -3.6511 40 1 5.7592 -6.7782 -2.0956 41 1 8.1205 -5.7165 -3.7378 42 1 4.1230 -3.9569 0.4566 43 1 3.8060 -2.6119 -0.6765 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041904556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:52 Heat of formation + Delta-G solvation = -7.998550 kcal Electronic energy + Delta-G solvation = -22678.366027 eV Core-core repulsion = 19530.808026 eV Total energy + Delta-G solvation = -3147.558001 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56858 -39.87716 -37.04178 -36.13402 -34.75929 -33.09855 -30.94877 -30.24181 -28.82923 -28.58887 -26.44335 -25.24914 -23.67722 -21.85443 -21.66629 -20.70803 -19.06690 -18.61863 -18.16251 -16.82650 -16.56155 -16.41108 -15.83641 -15.69731 -15.21633 -15.04210 -14.85217 -14.57727 -14.52934 -13.78178 -13.77403 -13.52273 -13.28276 -13.23003 -13.09187 -13.06608 -12.72374 -12.66074 -12.48906 -12.36311 -12.08561 -11.98608 -11.70029 -11.54979 -11.33728 -11.08272 -10.68518 -10.51348 -10.11434 -9.53884 -8.87250 -7.83863 -5.18288 0.39299 1.48035 1.50046 1.57366 2.04176 2.27400 2.52547 3.36310 3.42793 3.59444 3.86192 3.90813 3.95754 4.01755 4.16172 4.27025 4.34079 4.40972 4.50660 4.56964 4.61480 4.67390 4.69551 4.79690 4.87313 4.89623 4.91499 4.95020 5.01027 5.10388 5.13479 5.16655 5.22707 5.43850 5.52568 5.56537 5.59257 5.66544 5.72131 5.77702 6.20117 6.42220 7.09176 7.19049 7.78706 8.47978 9.28530 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.006132 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.555982 B = 4564.977670 C = 6240.276184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.126 4.126 4 C -0.264 4.264 5 C 0.542 3.458 6 O -0.574 6.574 7 N -0.603 5.603 8 C 0.110 3.890 9 C -0.106 4.106 10 C -0.099 4.099 11 H 0.076 0.924 12 C -0.123 4.123 13 C 0.182 3.818 14 N -0.610 5.610 15 C -0.235 4.235 16 H 0.089 0.911 17 C -0.064 4.064 18 N -0.951 5.951 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.265 1.265 22 H -0.298 1.298 23 C 0.147 3.853 24 H 0.011 0.989 25 C 0.122 3.878 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.004 0.996 40 H 0.017 0.983 41 H 0.246 0.754 42 H 0.067 0.933 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.807 6.681 7.491 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.024 4.024 3 C -0.182 4.182 4 C -0.285 4.285 5 C 0.335 3.665 6 O -0.457 6.457 7 N -0.334 5.334 8 C -0.012 4.012 9 C -0.144 4.144 10 C -0.119 4.119 11 H 0.094 0.906 12 C -0.161 4.161 13 C 0.057 3.943 14 N -0.335 5.335 15 C -0.364 4.364 16 H 0.107 0.893 17 C -0.257 4.257 18 N -0.599 5.599 19 Si 0.800 3.200 20 H -0.215 1.215 21 H -0.189 1.189 22 H -0.225 1.225 23 C 0.039 3.961 24 H 0.028 0.972 25 C -0.002 4.002 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.022 0.978 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.187 6.677 7.571 15.825 hybrid contribution 1.379 0.150 -0.618 1.519 sum -10.808 6.827 6.953 14.552 Atomic orbital electron populations 1.21048 0.91030 1.02435 1.02884 1.22918 0.96967 0.95270 0.87262 1.21085 1.00247 0.92944 1.03928 1.22567 1.01103 0.91837 1.12963 1.18916 0.86246 0.84915 0.76403 1.90684 1.16016 1.87812 1.51186 1.47777 1.12200 1.06530 1.66918 1.21669 0.98138 0.83215 0.98215 1.21721 0.94283 0.99983 0.98452 1.22190 0.96201 0.95385 0.98083 0.90611 1.22599 0.96611 0.99147 0.97779 1.21335 0.93489 0.83948 0.95498 1.44408 1.08002 1.10844 1.70266 1.19406 0.92467 0.96982 1.27566 0.89347 1.25619 1.00798 0.98574 1.00712 1.70166 1.27103 1.19453 1.43222 0.85198 0.78183 0.78342 0.78289 1.21509 1.18932 1.22522 1.21106 0.86665 0.95282 0.93039 0.97202 1.21362 0.80810 1.01215 0.96774 0.90779 0.90188 0.92033 0.89332 0.88979 0.90581 0.84847 0.89365 0.90718 0.92156 0.87736 0.89845 0.91545 0.97759 0.96425 0.94525 0.91470 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.42 71.23 0.60 -2.08 16 2 C -0.02 -0.51 6.10 -17.62 -0.11 -0.62 16 3 C -0.13 -2.00 10.01 71.24 0.71 -1.28 16 4 C -0.26 -7.35 8.80 23.43 0.21 -7.14 16 5 C 0.54 17.46 7.45 86.57 0.64 18.11 16 6 O -0.57 -20.15 12.67 -4.06 -0.05 -20.20 16 7 N -0.60 -18.88 2.98 -827.05 -2.46 -21.35 16 8 C 0.11 2.97 6.34 86.66 0.55 3.51 16 9 C -0.11 -2.76 5.76 30.56 0.18 -2.59 16 10 C -0.10 -3.26 2.58 -10.08 -0.03 -3.29 16 11 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 12 C -0.12 -4.39 6.56 31.64 0.21 -4.19 16 13 C 0.18 8.87 5.44 86.87 0.47 9.34 16 14 N -0.61 -30.25 3.35 -669.17 -2.24 -32.49 16 15 C -0.24 -12.59 9.89 84.03 0.83 -11.76 16 16 H 0.09 4.41 7.38 -2.91 -0.02 4.39 16 17 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 18 N -0.95 -56.51 10.49 21.65 0.23 -56.29 16 19 Si 0.97 44.58 29.56 68.60 2.03 46.61 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 23 C 0.15 5.84 2.80 45.60 0.13 5.97 16 24 H 0.01 0.45 7.94 -2.39 -0.02 0.43 16 25 C 0.12 4.21 5.42 86.03 0.47 4.68 16 26 H 0.07 1.75 7.96 -2.39 -0.02 1.73 16 27 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 28 H 0.06 1.73 6.32 -2.39 -0.02 1.71 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.10 8.12 -2.38 -0.02 1.08 16 31 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 32 H 0.13 3.58 6.07 -2.91 -0.02 3.56 16 33 H 0.09 2.42 6.93 -2.39 -0.02 2.40 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 39 H 0.00 0.23 7.60 -2.38 -0.02 0.21 16 40 H 0.02 0.95 7.44 -2.39 -0.02 0.93 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.08 2.91 5.17 -2.39 -0.01 2.90 16 Total: -1.00 -66.38 331.79 3.81 -62.57 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.98 Total: 15.56 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.33 Total: 5.58 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.48 Total: -110.13 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.38 3.81 -62.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.572 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds