Wall clock time and date at job start Tue Mar 31 2020 00:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 119.99946 * 2 1 4 4 C 1.32994 * 120.00061 * 179.97438 * 2 1 3 5 5 C 1.47102 * 119.99855 * 352.17718 * 4 2 1 6 6 O 1.21609 * 120.00197 * 2.57888 * 5 4 2 7 7 N 1.34778 * 119.99841 * 182.58044 * 5 4 2 8 8 C 1.44749 * 117.18891 * 175.17776 * 7 5 4 9 9 C 1.50429 * 111.50280 * 213.73750 * 8 7 5 10 10 C 1.49438 * 114.72180 * 317.03180 * 9 8 7 11 11 H 1.08999 * 107.67444 * 166.22777 * 10 9 8 12 12 C 1.54519 * 112.98061 * 284.54348 * 10 9 8 13 13 C 1.55255 * 100.54431 * 165.81925 * 12 10 9 14 14 N 1.47465 * 105.05488 * 323.80350 * 13 12 10 15 15 C 1.36938 * 125.66680 * 200.69459 * 14 13 12 16 16 H 1.07999 * 120.00266 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99587 * 0.02728 * 15 14 13 18 18 N 1.31619 * 120.00316 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47041 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46958 * 120.00154 * 19 17 15 22 22 H 1.48501 * 109.46996 * 239.99980 * 19 17 15 23 23 C 1.48291 * 108.66949 * 20.96115 * 14 13 12 24 24 H 1.09005 * 109.25080 * 121.35088 * 23 14 13 25 25 C 1.43783 * 117.18931 * 355.19842 * 7 5 4 26 26 H 1.08997 * 109.47041 * 263.67889 * 1 2 3 27 27 H 1.09003 * 109.47114 * 23.67791 * 1 2 3 28 28 H 1.09001 * 109.46986 * 143.67737 * 1 2 3 29 29 H 1.09004 * 109.47148 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47463 * 300.00214 * 3 2 1 31 31 H 1.09001 * 109.47294 * 60.00568 * 3 2 1 32 32 H 1.07998 * 120.00047 * 172.16991 * 4 2 1 33 33 H 1.09001 * 109.03433 * 334.35745 * 8 7 5 34 34 H 1.09003 * 109.03251 * 93.20698 * 8 7 5 35 35 H 1.08997 * 107.94853 * 195.87346 * 9 8 7 36 36 H 1.09005 * 108.51840 * 78.61464 * 9 8 7 37 37 H 1.09000 * 111.20020 * 47.99452 * 12 10 9 38 38 H 1.09000 * 111.23753 * 283.65580 * 12 10 9 39 39 H 1.08997 * 110.32421 * 204.90922 * 13 12 10 40 40 H 1.09000 * 110.41119 * 82.74257 * 13 12 10 41 41 H 0.96996 * 119.99827 * 179.97438 * 18 17 15 42 42 H 1.08998 * 108.06440 * 35.52500 * 25 7 5 43 43 H 1.09010 * 108.06068 * 279.03638 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4467 -2.4197 0.1745 6 8 0.2344 -2.4185 0.2708 7 7 2.1258 -3.5827 0.2271 8 6 1.3640 -4.7813 0.5067 9 6 2.1651 -5.7689 1.3103 10 6 3.5820 -5.9340 0.8649 11 1 4.1161 -6.4672 1.6514 12 6 3.7144 -6.7690 -0.4284 13 6 5.1812 -6.4489 -0.8243 14 7 5.3794 -5.0365 -0.4499 15 6 6.3466 -4.2060 -0.9501 16 1 6.4089 -3.1830 -0.6096 17 6 7.2467 -4.6792 -1.8949 18 7 7.1710 -5.9261 -2.3096 19 14 8.5656 -3.5462 -2.5779 20 1 8.4378 -2.2049 -1.9536 21 1 9.9064 -4.1075 -2.2738 22 1 8.4015 -3.4258 -4.0489 23 6 4.3616 -4.6665 0.5631 24 1 4.8633 -4.3275 1.4695 25 6 3.5446 -3.5258 0.0013 26 1 -0.3633 -0.1131 1.0214 27 1 -0.3633 0.9412 -0.4127 28 1 -0.3633 -0.8280 -0.6087 29 1 3.3321 1.1059 0.0005 30 1 1.9971 1.8767 -0.8899 31 1 1.9972 1.8766 0.8900 32 1 3.2444 -1.1562 -0.1269 33 1 0.4669 -4.5106 1.0635 34 1 1.0698 -5.2434 -0.4357 35 1 1.6667 -6.7362 1.2471 36 1 2.1640 -5.4492 2.3524 37 1 3.0163 -6.4263 -1.1921 38 1 3.5835 -7.8322 -0.2271 39 1 5.3207 -6.5794 -1.8974 40 1 5.8716 -7.0873 -0.2730 41 1 7.7998 -6.2565 -2.9701 42 1 3.9187 -2.5975 0.4329 43 1 3.7142 -3.4867 -1.0749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041904557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:59 Heat of formation + Delta-G solvation = 14.835562 kcal Electronic energy + Delta-G solvation = -22773.079207 eV Core-core repulsion = 19626.511367 eV Total energy + Delta-G solvation = -3146.567840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.37482 -38.45610 -35.74454 -34.83259 -33.41554 -31.71862 -29.33274 -28.78105 -27.80796 -27.51808 -24.70523 -23.99317 -22.69172 -20.75838 -20.14994 -18.35693 -17.27852 -17.02083 -16.95644 -15.44960 -15.35932 -14.92141 -14.72995 -14.10719 -14.05334 -13.83235 -13.69126 -13.38601 -12.81055 -12.61766 -12.42253 -12.30146 -12.04430 -11.85839 -11.60367 -11.52601 -11.29975 -11.18880 -11.02456 -10.85889 -10.79706 -10.11551 -9.92330 -9.85510 -9.73934 -9.51831 -9.20111 -9.00244 -8.69849 -8.06440 -6.94020 -5.72018 -3.12943 1.50239 3.35802 3.40723 3.43914 3.44695 3.53450 4.41524 4.74473 4.90657 5.03702 5.11733 5.16644 5.27332 5.37408 5.44467 5.46604 5.53643 5.64204 5.69874 5.75805 5.77854 5.84080 5.88734 5.89742 6.02739 6.17759 6.20330 6.23009 6.31145 6.42490 6.55338 6.60035 6.61684 6.68274 6.82002 6.95158 7.10323 7.49251 7.58521 7.76164 7.81009 8.26819 8.52396 9.14955 9.75225 10.40529 11.33241 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006140 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.480767 B = 4558.905657 C = 6130.119799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.044 4.044 3 C -0.125 4.125 4 C -0.230 4.230 5 C 0.536 3.464 6 O -0.555 6.555 7 N -0.586 5.586 8 C 0.122 3.878 9 C -0.112 4.112 10 C -0.091 4.091 11 H 0.065 0.935 12 C -0.141 4.141 13 C 0.158 3.842 14 N -0.597 5.597 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.163 3.837 24 H 0.039 0.961 25 C 0.098 3.902 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.016 0.984 41 H 0.252 0.748 42 H 0.063 0.937 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 6.396 5.804 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.045 4.045 3 C -0.182 4.182 4 C -0.250 4.250 5 C 0.328 3.672 6 O -0.437 6.437 7 N -0.317 5.317 8 C 0.000 4.000 9 C -0.150 4.150 10 C -0.110 4.110 11 H 0.083 0.917 12 C -0.179 4.179 13 C 0.034 3.966 14 N -0.323 5.323 15 C -0.354 4.354 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.055 3.945 24 H 0.057 0.943 25 C -0.027 4.027 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.627 6.300 5.699 13.606 hybrid contribution 1.096 0.472 -0.329 1.238 sum -9.531 6.772 5.370 12.867 Atomic orbital electron populations 1.21161 0.91135 1.02341 1.03401 1.22528 0.96715 0.94457 0.90848 1.20993 1.00136 0.94549 1.02517 1.22690 1.00863 0.92033 1.09438 1.18693 0.86993 0.84593 0.76933 1.90664 1.13906 1.87383 1.51771 1.46701 1.08663 1.06861 1.69488 1.20453 0.94540 0.85278 0.99779 1.20451 0.95744 0.99279 0.99575 1.20610 0.94413 0.97064 0.98931 0.91691 1.23038 1.01003 0.97777 0.96120 1.21839 0.88472 0.84062 1.02262 1.45003 1.33024 1.09022 1.45223 1.19068 1.05516 0.93057 1.17785 0.90399 1.24785 0.99427 0.96479 0.99645 1.69879 1.38504 1.13944 1.34356 0.86048 0.81487 0.79572 0.78667 1.20483 1.21749 1.21728 1.20251 0.89832 0.91834 0.92609 0.94313 1.21603 0.78188 1.00535 1.02368 0.90896 0.93134 0.88677 0.91283 0.90906 0.90715 0.85010 0.89951 0.92711 0.90842 0.92315 0.92275 0.92226 0.88608 0.96632 0.93749 0.91887 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 8.52 36.00 0.31 -1.24 16 2 C -0.04 -0.55 6.11 -101.17 -0.62 -1.17 16 3 C -0.13 -1.20 10.09 36.00 0.36 -0.84 16 4 C -0.23 -3.39 8.67 -37.81 -0.33 -3.72 16 5 C 0.54 9.08 7.43 -12.66 -0.09 8.99 16 6 O -0.56 -10.10 12.38 5.27 0.07 -10.04 16 7 N -0.59 -9.91 3.12 -181.27 -0.56 -10.48 16 8 C 0.12 1.87 6.06 -6.26 -0.04 1.84 16 9 C -0.11 -1.58 5.35 -29.77 -0.16 -1.74 16 10 C -0.09 -1.55 2.47 -92.17 -0.23 -1.78 16 11 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 12 C -0.14 -2.60 6.54 -24.74 -0.16 -2.76 16 13 C 0.16 3.72 5.75 -2.32 -0.01 3.71 16 14 N -0.60 -14.42 2.95 -163.86 -0.48 -14.90 16 15 C -0.23 -5.95 9.66 -15.06 -0.15 -6.09 16 16 H 0.08 1.97 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.11 10.16 55.49 0.56 -25.55 16 19 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.16 3.21 3.42 -68.47 -0.23 2.97 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 C 0.10 1.79 5.10 -6.42 -0.03 1.76 16 26 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 27 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.09 1.41 5.97 -51.93 -0.31 1.10 16 29 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.13 1.89 5.89 -52.49 -0.31 1.58 16 33 H 0.08 1.24 7.07 -51.93 -0.37 0.87 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 2.55 6.11 -51.93 -0.32 2.24 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.06 1.08 5.80 -51.93 -0.30 0.78 16 43 H 0.07 1.51 7.54 -51.92 -0.39 1.12 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -29.37 329.96 -8.96 -38.33 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.01 Total: 1.63 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.48 Total: -0.38 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.48 Total: -50.92 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.37 -8.96 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.164 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds