Wall clock time and date at job start Tue Mar 31 2020 00:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 119.99946 * 2 1 4 4 C 1.32994 * 120.00061 * 179.97438 * 2 1 3 5 5 C 1.47102 * 119.99855 * 352.17718 * 4 2 1 6 6 O 1.21609 * 120.00197 * 2.57888 * 5 4 2 7 7 N 1.34778 * 119.99841 * 182.58044 * 5 4 2 8 8 C 1.44749 * 117.18891 * 175.17776 * 7 5 4 9 9 C 1.50429 * 111.50280 * 213.73750 * 8 7 5 10 10 C 1.49438 * 114.72180 * 317.03180 * 9 8 7 11 11 H 1.08999 * 107.67444 * 166.22777 * 10 9 8 12 12 C 1.54519 * 112.98061 * 284.54348 * 10 9 8 13 13 C 1.55255 * 100.54431 * 165.81925 * 12 10 9 14 14 N 1.47465 * 105.05488 * 323.80350 * 13 12 10 15 15 C 1.36938 * 125.66680 * 200.69459 * 14 13 12 16 16 H 1.07999 * 120.00266 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99587 * 0.02728 * 15 14 13 18 18 N 1.31619 * 120.00316 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99775 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47041 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46958 * 120.00154 * 19 17 15 22 22 H 1.48501 * 109.46996 * 239.99980 * 19 17 15 23 23 C 1.48291 * 108.66949 * 20.96115 * 14 13 12 24 24 H 1.09005 * 109.25080 * 121.35088 * 23 14 13 25 25 C 1.43783 * 117.18931 * 355.19842 * 7 5 4 26 26 H 1.08997 * 109.47041 * 263.67889 * 1 2 3 27 27 H 1.09003 * 109.47114 * 23.67791 * 1 2 3 28 28 H 1.09001 * 109.46986 * 143.67737 * 1 2 3 29 29 H 1.09004 * 109.47148 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47463 * 300.00214 * 3 2 1 31 31 H 1.09001 * 109.47294 * 60.00568 * 3 2 1 32 32 H 1.07998 * 120.00047 * 172.16991 * 4 2 1 33 33 H 1.09001 * 109.03433 * 334.35745 * 8 7 5 34 34 H 1.09003 * 109.03251 * 93.20698 * 8 7 5 35 35 H 1.08997 * 107.94853 * 195.87346 * 9 8 7 36 36 H 1.09005 * 108.51840 * 78.61464 * 9 8 7 37 37 H 1.09000 * 111.20020 * 47.99452 * 12 10 9 38 38 H 1.09000 * 111.23753 * 283.65580 * 12 10 9 39 39 H 1.08997 * 110.32421 * 204.90922 * 13 12 10 40 40 H 1.09000 * 110.41119 * 82.74257 * 13 12 10 41 41 H 0.96996 * 119.99827 * 179.97438 * 18 17 15 42 42 H 1.08998 * 108.06440 * 35.52500 * 25 7 5 43 43 H 1.09010 * 108.06068 * 279.03638 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4467 -2.4197 0.1745 6 8 0.2344 -2.4185 0.2708 7 7 2.1258 -3.5827 0.2271 8 6 1.3640 -4.7813 0.5067 9 6 2.1651 -5.7689 1.3103 10 6 3.5820 -5.9340 0.8649 11 1 4.1161 -6.4672 1.6514 12 6 3.7144 -6.7690 -0.4284 13 6 5.1812 -6.4489 -0.8243 14 7 5.3794 -5.0365 -0.4499 15 6 6.3466 -4.2060 -0.9501 16 1 6.4089 -3.1830 -0.6096 17 6 7.2467 -4.6792 -1.8949 18 7 7.1710 -5.9261 -2.3096 19 14 8.5656 -3.5462 -2.5779 20 1 8.4378 -2.2049 -1.9536 21 1 9.9064 -4.1075 -2.2738 22 1 8.4015 -3.4258 -4.0489 23 6 4.3616 -4.6665 0.5631 24 1 4.8633 -4.3275 1.4695 25 6 3.5446 -3.5258 0.0013 26 1 -0.3633 -0.1131 1.0214 27 1 -0.3633 0.9412 -0.4127 28 1 -0.3633 -0.8280 -0.6087 29 1 3.3321 1.1059 0.0005 30 1 1.9971 1.8767 -0.8899 31 1 1.9972 1.8766 0.8900 32 1 3.2444 -1.1562 -0.1269 33 1 0.4669 -4.5106 1.0635 34 1 1.0698 -5.2434 -0.4357 35 1 1.6667 -6.7362 1.2471 36 1 2.1640 -5.4492 2.3524 37 1 3.0163 -6.4263 -1.1921 38 1 3.5835 -7.8322 -0.2271 39 1 5.3207 -6.5794 -1.8974 40 1 5.8716 -7.0873 -0.2730 41 1 7.7998 -6.2565 -2.9701 42 1 3.9187 -2.5975 0.4329 43 1 3.7142 -3.4867 -1.0749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041904557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:56 Heat of formation + Delta-G solvation = -1.278768 kcal Electronic energy + Delta-G solvation = -22773.777977 eV Core-core repulsion = 19626.511367 eV Total energy + Delta-G solvation = -3147.266610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.72361 -39.90917 -37.06026 -36.10650 -34.99431 -33.42304 -30.90966 -30.40488 -28.84991 -28.58761 -26.43145 -25.51044 -24.09004 -22.25041 -21.75069 -19.56987 -18.84866 -18.53653 -18.36758 -16.98401 -16.73072 -16.49230 -16.33838 -15.62895 -15.19906 -15.13950 -14.86984 -14.62789 -14.32929 -14.01271 -13.61523 -13.49214 -13.36680 -13.23482 -13.11052 -12.87620 -12.66623 -12.58163 -12.55024 -12.43719 -12.33672 -11.94478 -11.62525 -11.41785 -11.25531 -11.11753 -10.73280 -10.47612 -10.09494 -9.41606 -8.91549 -7.76706 -5.19081 0.39532 1.48000 1.48119 1.58092 2.15824 2.27630 2.50242 3.35029 3.48262 3.68597 3.74754 3.85300 3.93152 4.05176 4.17870 4.21847 4.26138 4.42981 4.51582 4.55062 4.66915 4.70851 4.72680 4.81752 4.89096 4.92367 4.93470 5.00300 5.03225 5.10265 5.14412 5.21598 5.35216 5.47086 5.52026 5.58769 5.63398 5.68733 5.79719 5.84829 6.28510 6.43290 7.11232 7.22567 7.78035 8.42713 9.27305 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006140 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.480767 B = 4558.905657 C = 6130.119799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.022 4.022 3 C -0.125 4.125 4 C -0.263 4.263 5 C 0.531 3.469 6 O -0.572 6.572 7 N -0.591 5.591 8 C 0.119 3.881 9 C -0.104 4.104 10 C -0.082 4.082 11 H 0.071 0.929 12 C -0.124 4.124 13 C 0.160 3.840 14 N -0.616 5.616 15 C -0.229 4.229 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.950 5.950 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.296 1.296 22 H -0.295 1.295 23 C 0.157 3.843 24 H 0.039 0.961 25 C 0.119 3.881 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.059 0.941 40 H -0.010 1.010 41 H 0.245 0.755 42 H 0.073 0.927 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.491 8.032 7.077 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.024 4.024 3 C -0.182 4.182 4 C -0.284 4.284 5 C 0.324 3.676 6 O -0.456 6.456 7 N -0.322 5.322 8 C -0.003 4.003 9 C -0.142 4.142 10 C -0.101 4.101 11 H 0.090 0.910 12 C -0.163 4.163 13 C 0.035 3.965 14 N -0.341 5.341 15 C -0.357 4.357 16 H 0.103 0.897 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.223 1.223 22 H -0.223 1.223 23 C 0.050 3.950 24 H 0.057 0.943 25 C -0.007 4.007 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.008 0.992 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.871 7.955 7.003 15.913 hybrid contribution 1.397 0.037 -0.709 1.567 sum -10.474 7.992 6.294 14.601 Atomic orbital electron populations 1.21133 0.90979 1.02851 1.03014 1.22937 0.97032 0.95232 0.87216 1.21092 0.99757 0.93024 1.04280 1.22642 1.00902 0.91884 1.12963 1.19068 0.86945 0.85196 0.76369 1.90657 1.14500 1.87681 1.52743 1.46730 1.08002 1.07687 1.69755 1.20577 0.94827 0.85004 0.99894 1.20406 0.93405 1.00468 0.99903 1.20599 0.96251 0.95121 0.98166 0.91034 1.22879 0.96936 0.99752 0.96712 1.21612 0.91405 0.83832 0.99658 1.45253 1.33586 1.09084 1.46176 1.19442 1.05528 0.93645 1.17123 0.89682 1.25574 1.01854 0.97855 1.00619 1.70122 1.39227 1.15566 1.35072 0.85076 0.78576 0.78611 0.77516 1.18681 1.22285 1.22266 1.20462 0.89458 0.93693 0.91382 0.94277 1.21155 0.79108 1.00326 1.00090 0.90944 0.90293 0.91128 0.91237 0.89110 0.88615 0.85046 0.89375 0.93204 0.87972 0.90693 0.92626 0.89477 0.92304 0.99214 0.94578 0.90866 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 8.52 71.24 0.61 -2.23 16 2 C -0.02 -0.52 6.11 -17.62 -0.11 -0.63 16 3 C -0.13 -2.00 10.09 71.24 0.72 -1.29 16 4 C -0.26 -7.53 8.67 23.43 0.20 -7.32 16 5 C 0.53 17.65 7.43 86.57 0.64 18.29 16 6 O -0.57 -20.45 12.38 -4.06 -0.05 -20.50 16 7 N -0.59 -19.51 3.12 -845.65 -2.64 -22.15 16 8 C 0.12 3.45 6.06 85.88 0.52 3.97 16 9 C -0.10 -2.62 5.35 28.62 0.15 -2.47 16 10 C -0.08 -2.66 2.47 -11.80 -0.03 -2.69 16 11 H 0.07 2.25 8.13 -2.39 -0.02 2.24 16 12 C -0.12 -4.48 6.54 31.89 0.21 -4.27 16 13 C 0.16 7.75 5.75 86.97 0.50 8.25 16 14 N -0.62 -30.26 2.95 -672.35 -1.98 -32.24 16 15 C -0.23 -12.22 9.66 84.03 0.81 -11.41 16 16 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 18 N -0.95 -56.10 10.16 21.65 0.22 -55.88 16 19 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 23 C 0.16 6.10 3.42 43.66 0.15 6.25 16 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 25 C 0.12 4.30 5.10 86.28 0.44 4.74 16 26 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 27 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 28 H 0.07 2.02 5.97 -2.39 -0.01 2.01 16 29 H 0.07 1.14 7.82 -2.38 -0.02 1.12 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 3.69 5.89 -2.91 -0.02 3.67 16 33 H 0.09 2.48 7.07 -2.39 -0.02 2.46 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.07 8.08 -2.39 -0.02 2.05 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 38 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.06 3.29 6.11 -2.39 -0.01 3.28 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.07 2.48 5.80 -2.39 -0.01 2.47 16 43 H 0.04 1.69 7.54 -2.38 -0.02 1.68 16 Total: -1.00 -65.61 329.96 3.85 -61.76 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.98 Total: 16.20 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.28 Total: 5.98 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.40 Total: -110.27 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -65.61 3.85 -61.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.483 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds