Wall clock time and date at job start Tue Mar 31 2020 00:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50701 * 119.99864 * 2 1 4 4 C 1.32991 * 120.00258 * 180.02562 * 2 1 3 5 5 C 1.47107 * 120.00052 * 352.03156 * 4 2 1 6 6 O 1.21610 * 119.99924 * 1.52196 * 5 4 2 7 7 N 1.34777 * 119.99976 * 181.51844 * 5 4 2 8 8 C 1.47137 * 121.20904 * 354.85997 * 7 5 4 9 9 C 1.52842 * 107.94542 * 237.33348 * 8 7 5 10 10 C 1.53093 * 110.57366 * 302.63560 * 9 8 7 11 11 H 1.09001 * 113.06605 * 288.99343 * 10 9 8 12 12 C 1.56029 * 106.38725 * 164.56626 * 10 9 8 13 13 C 1.54503 * 102.61376 * 281.63300 * 12 10 9 14 14 N 1.47443 * 107.14450 * 337.14539 * 13 12 10 15 15 C 1.36929 * 126.05902 * 178.42790 * 14 13 12 16 16 H 1.08001 * 119.99888 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00246 * 359.94810 * 15 14 13 18 18 N 1.31623 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46918 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46724 * 119.99795 * 19 17 15 22 22 H 1.48497 * 109.47321 * 239.99978 * 19 17 15 23 23 C 1.46467 * 107.87619 * 358.38169 * 14 13 12 24 24 H 1.08998 * 107.86308 * 270.36495 * 23 14 13 25 25 C 1.46758 * 121.21612 * 174.83561 * 7 5 4 26 26 H 1.09005 * 109.47501 * 263.64368 * 1 2 3 27 27 H 1.08991 * 109.47732 * 23.64960 * 1 2 3 28 28 H 1.08999 * 109.46878 * 143.65186 * 1 2 3 29 29 H 1.08994 * 109.47252 * 240.00015 * 3 2 1 30 30 H 1.09010 * 109.46801 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46824 * 119.99583 * 3 2 1 32 32 H 1.07996 * 119.99981 * 172.03510 * 4 2 1 33 33 H 1.09000 * 109.79106 * 117.71331 * 8 7 5 34 34 H 1.09000 * 109.80270 * 356.95549 * 8 7 5 35 35 H 1.08995 * 109.25607 * 182.35629 * 9 8 7 36 36 H 1.08993 * 109.22383 * 62.89768 * 9 8 7 37 37 H 1.09003 * 110.78039 * 39.91061 * 12 10 9 38 38 H 1.09000 * 110.78135 * 163.15851 * 12 10 9 39 39 H 1.08997 * 109.90581 * 96.52103 * 13 12 10 40 40 H 1.08998 * 109.90224 * 217.58873 * 13 12 10 41 41 H 0.96999 * 119.99745 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.22376 * 7.12200 * 25 7 5 43 43 H 1.09001 * 109.22581 * 247.72445 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4472 -2.4197 0.1755 6 8 0.2369 -2.4168 0.2938 7 7 2.1245 -3.5845 0.2057 8 6 3.5734 -3.6306 -0.0461 9 6 3.8174 -4.5781 -1.2203 10 6 3.2472 -5.9665 -0.9187 11 1 3.8162 -6.5068 -0.1621 12 6 3.1826 -6.7217 -2.2826 13 6 1.9159 -6.1271 -2.9378 14 7 1.0728 -5.5961 -1.8509 15 6 -0.1283 -4.9563 -2.0019 16 1 -0.6664 -4.6059 -1.1335 17 6 -0.6542 -4.7575 -3.2710 18 7 0.0020 -5.1835 -4.3294 19 14 -2.2932 -3.8852 -3.4769 20 1 -2.8246 -3.5087 -2.1423 21 1 -2.1033 -2.6622 -4.2977 22 1 -3.2548 -4.7916 -4.1542 23 6 1.7474 -5.8755 -0.5812 24 1 1.4128 -6.8526 -0.2328 25 6 1.4439 -4.8529 0.4913 26 1 -0.3634 -0.1138 1.0214 27 1 -0.3634 0.9412 -0.4122 28 1 -0.3633 -0.8277 -0.6091 29 1 2.8871 1.3629 -0.8899 30 1 1.5520 2.1336 0.0005 31 1 2.8871 1.3629 0.8901 32 1 3.2441 -1.1561 -0.1301 33 1 4.0903 -4.0004 0.8394 34 1 3.9368 -2.6337 -0.2955 35 1 4.8895 -4.6609 -1.3987 36 1 3.3347 -4.1771 -2.1114 37 1 4.0658 -6.5086 -2.8848 38 1 3.0730 -7.7947 -2.1257 39 1 2.1932 -5.3226 -3.6190 40 1 1.3793 -6.9048 -3.4811 41 1 -0.3653 -5.0443 -5.2163 42 1 0.3680 -4.6821 0.5303 43 1 1.7821 -5.2326 1.4555 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041904558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:04 Heat of formation + Delta-G solvation = 14.448030 kcal Electronic energy + Delta-G solvation = -23481.970020 eV Core-core repulsion = 20335.385375 eV Total energy + Delta-G solvation = -3146.584644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.90817 -38.22173 -35.34291 -34.71416 -32.74237 -31.13675 -29.49978 -28.34254 -27.68090 -27.23736 -24.55102 -23.74457 -22.47222 -20.55075 -19.91649 -18.49497 -17.63335 -16.85445 -16.43853 -15.17670 -14.83225 -14.67695 -14.30154 -13.88933 -13.83897 -13.71218 -13.56030 -12.93889 -12.81717 -12.53667 -12.30484 -12.09141 -11.88956 -11.59646 -11.48811 -11.38136 -11.26485 -10.99016 -10.84105 -10.70717 -10.63678 -10.01363 -9.80191 -9.70849 -9.57821 -9.42243 -8.90019 -8.81126 -8.46866 -7.92398 -6.69157 -5.57341 -2.88559 1.70715 3.50593 3.56765 3.58753 3.63600 3.88310 4.64275 4.86587 4.97860 5.09245 5.17727 5.35742 5.40290 5.50548 5.57143 5.61129 5.63216 5.76870 5.79153 5.82294 5.89241 5.90128 6.04209 6.10151 6.11993 6.19987 6.31248 6.35262 6.41467 6.50094 6.57787 6.68684 6.73438 6.79549 6.91529 7.02469 7.23669 7.67896 7.71268 7.98494 8.08845 8.37088 8.87928 9.36698 9.97420 10.61766 11.55345 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.008987 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.482483 B = 3114.980025 C = 4568.206145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.044 4.044 3 C -0.123 4.123 4 C -0.228 4.228 5 C 0.551 3.449 6 O -0.533 6.533 7 N -0.593 5.593 8 C 0.112 3.888 9 C -0.123 4.123 10 C -0.101 4.101 11 H 0.074 0.926 12 C -0.144 4.144 13 C 0.178 3.822 14 N -0.588 5.588 15 C -0.206 4.206 16 H 0.083 0.917 17 C -0.012 4.012 18 N -0.928 5.928 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.153 3.847 24 H 0.025 0.975 25 C 0.114 3.886 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.247 0.753 42 H 0.095 0.905 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.272 6.179 9.257 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.046 4.046 3 C -0.180 4.180 4 C -0.249 4.249 5 C 0.342 3.658 6 O -0.413 6.413 7 N -0.325 5.325 8 C -0.012 4.012 9 C -0.161 4.161 10 C -0.121 4.121 11 H 0.093 0.907 12 C -0.182 4.182 13 C 0.054 3.946 14 N -0.313 5.313 15 C -0.335 4.335 16 H 0.101 0.899 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.222 1.222 23 C 0.045 3.955 24 H 0.042 0.958 25 C -0.009 4.009 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.454 6.239 9.144 14.557 hybrid contribution -0.595 0.345 -0.417 0.804 sum 8.859 6.585 8.727 14.071 Atomic orbital electron populations 1.21228 0.90896 1.02679 1.03441 1.22491 0.96938 0.94196 0.90989 1.20971 1.00116 0.94497 1.02421 1.22454 1.00048 0.92515 1.09851 1.18298 0.86910 0.83747 0.76852 1.90720 1.13664 1.86752 1.50138 1.47669 1.08152 1.06670 1.70031 1.21663 0.81335 1.00261 0.97910 1.21829 0.99692 0.95299 0.99250 1.22361 0.96768 0.95503 0.97462 0.90729 1.23170 1.00152 0.98750 0.96173 1.21201 0.86939 0.96729 0.89742 1.44306 1.20425 1.67297 0.99321 1.19123 0.93742 1.27885 0.92703 0.89879 1.24700 0.98832 1.01588 0.95532 1.69973 1.38478 1.52084 0.97137 0.86116 0.83796 0.78895 0.77670 1.20179 1.22096 1.22175 1.20716 0.90859 0.95150 0.88796 0.95758 1.21346 0.99816 0.83472 0.96273 0.90870 0.93226 0.88172 0.90952 0.91487 0.90973 0.85974 0.92154 0.90355 0.92202 0.90129 0.92390 0.92804 0.93786 0.94171 0.94225 0.88721 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.47 36.01 0.30 -1.70 16 2 C -0.04 -0.64 6.11 -101.17 -0.62 -1.25 16 3 C -0.12 -1.25 10.06 36.01 0.36 -0.89 16 4 C -0.23 -3.56 9.00 -37.80 -0.34 -3.90 16 5 C 0.55 10.73 7.58 -12.66 -0.10 10.64 16 6 O -0.53 -12.15 12.61 5.27 0.07 -12.09 16 7 N -0.59 -10.74 2.97 -175.49 -0.52 -11.26 16 8 C 0.11 1.60 6.34 -3.78 -0.02 1.57 16 9 C -0.12 -1.93 5.04 -26.76 -0.13 -2.07 16 10 C -0.10 -1.70 3.68 -88.43 -0.33 -2.03 16 11 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 12 C -0.14 -2.65 6.33 -24.32 -0.15 -2.81 16 13 C 0.18 4.33 4.61 -2.74 -0.01 4.32 16 14 N -0.59 -14.83 3.20 -164.42 -0.53 -15.35 16 15 C -0.21 -5.87 9.70 -15.06 -0.15 -6.02 16 16 H 0.08 2.43 6.51 -52.49 -0.34 2.09 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 18 N -0.93 -28.06 10.38 55.49 0.58 -27.49 16 19 Si 0.90 23.79 29.55 -169.99 -5.02 18.77 16 20 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 22 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 23 C 0.15 3.12 2.97 -68.30 -0.20 2.92 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 C 0.11 2.19 5.69 -4.78 -0.03 2.16 16 26 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.05 0.66 7.93 -51.93 -0.41 0.25 16 28 H 0.10 2.01 6.02 -51.93 -0.31 1.69 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.61 7.86 -51.92 -0.41 0.20 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.12 1.57 5.95 -52.49 -0.31 1.25 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.98 5.43 -51.93 -0.28 0.70 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.60 6.85 -51.93 -0.36 1.25 16 37 H 0.06 0.97 7.97 -51.93 -0.41 0.55 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 1.19 7.04 -51.93 -0.37 0.83 16 40 H 0.04 1.09 7.57 -51.93 -0.39 0.70 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.09 2.12 5.52 -51.93 -0.29 1.83 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -32.88 327.25 -8.82 -41.71 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.82 Total: 0.27 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.51 Total: 0.51 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.47 Total: -54.10 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.02 Total: 18.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.88 -8.82 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.154 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds