Wall clock time and date at job start Tue Mar 31 2020 00:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50701 * 119.99864 * 2 1 4 4 C 1.32991 * 120.00258 * 180.02562 * 2 1 3 5 5 C 1.47107 * 120.00052 * 352.03156 * 4 2 1 6 6 O 1.21610 * 119.99924 * 1.52196 * 5 4 2 7 7 N 1.34777 * 119.99976 * 181.51844 * 5 4 2 8 8 C 1.47137 * 121.20904 * 354.85997 * 7 5 4 9 9 C 1.52842 * 107.94542 * 237.33348 * 8 7 5 10 10 C 1.53093 * 110.57366 * 302.63560 * 9 8 7 11 11 H 1.09001 * 113.06605 * 288.99343 * 10 9 8 12 12 C 1.56029 * 106.38725 * 164.56626 * 10 9 8 13 13 C 1.54503 * 102.61376 * 281.63300 * 12 10 9 14 14 N 1.47443 * 107.14450 * 337.14539 * 13 12 10 15 15 C 1.36929 * 126.05902 * 178.42790 * 14 13 12 16 16 H 1.08001 * 119.99888 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00246 * 359.94810 * 15 14 13 18 18 N 1.31623 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00168 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46918 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46724 * 119.99795 * 19 17 15 22 22 H 1.48497 * 109.47321 * 239.99978 * 19 17 15 23 23 C 1.46467 * 107.87619 * 358.38169 * 14 13 12 24 24 H 1.08998 * 107.86308 * 270.36495 * 23 14 13 25 25 C 1.46758 * 121.21612 * 174.83561 * 7 5 4 26 26 H 1.09005 * 109.47501 * 263.64368 * 1 2 3 27 27 H 1.08991 * 109.47732 * 23.64960 * 1 2 3 28 28 H 1.08999 * 109.46878 * 143.65186 * 1 2 3 29 29 H 1.08994 * 109.47252 * 240.00015 * 3 2 1 30 30 H 1.09010 * 109.46801 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46824 * 119.99583 * 3 2 1 32 32 H 1.07996 * 119.99981 * 172.03510 * 4 2 1 33 33 H 1.09000 * 109.79106 * 117.71331 * 8 7 5 34 34 H 1.09000 * 109.80270 * 356.95549 * 8 7 5 35 35 H 1.08995 * 109.25607 * 182.35629 * 9 8 7 36 36 H 1.08993 * 109.22383 * 62.89768 * 9 8 7 37 37 H 1.09003 * 110.78039 * 39.91061 * 12 10 9 38 38 H 1.09000 * 110.78135 * 163.15851 * 12 10 9 39 39 H 1.08997 * 109.90581 * 96.52103 * 13 12 10 40 40 H 1.08998 * 109.90224 * 217.58873 * 13 12 10 41 41 H 0.96999 * 119.99745 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.22376 * 7.12200 * 25 7 5 43 43 H 1.09001 * 109.22581 * 247.72445 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4472 -2.4197 0.1755 6 8 0.2369 -2.4168 0.2938 7 7 2.1245 -3.5845 0.2057 8 6 3.5734 -3.6306 -0.0461 9 6 3.8174 -4.5781 -1.2203 10 6 3.2472 -5.9665 -0.9187 11 1 3.8162 -6.5068 -0.1621 12 6 3.1826 -6.7217 -2.2826 13 6 1.9159 -6.1271 -2.9378 14 7 1.0728 -5.5961 -1.8509 15 6 -0.1283 -4.9563 -2.0019 16 1 -0.6664 -4.6059 -1.1335 17 6 -0.6542 -4.7575 -3.2710 18 7 0.0020 -5.1835 -4.3294 19 14 -2.2932 -3.8852 -3.4769 20 1 -2.8246 -3.5087 -2.1423 21 1 -2.1033 -2.6622 -4.2977 22 1 -3.2548 -4.7916 -4.1542 23 6 1.7474 -5.8755 -0.5812 24 1 1.4128 -6.8526 -0.2328 25 6 1.4439 -4.8529 0.4913 26 1 -0.3634 -0.1138 1.0214 27 1 -0.3634 0.9412 -0.4122 28 1 -0.3633 -0.8277 -0.6091 29 1 2.8871 1.3629 -0.8899 30 1 1.5520 2.1336 0.0005 31 1 2.8871 1.3629 0.8901 32 1 3.2441 -1.1561 -0.1301 33 1 4.0903 -4.0004 0.8394 34 1 3.9368 -2.6337 -0.2955 35 1 4.8895 -4.6609 -1.3987 36 1 3.3347 -4.1771 -2.1114 37 1 4.0658 -6.5086 -2.8848 38 1 3.0730 -7.7947 -2.1257 39 1 2.1932 -5.3226 -3.6190 40 1 1.3793 -6.9048 -3.4811 41 1 -0.3653 -5.0443 -5.2163 42 1 0.3680 -4.6821 0.5303 43 1 1.7821 -5.2326 1.4555 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041904558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:02 Heat of formation + Delta-G solvation = -6.613013 kcal Electronic energy + Delta-G solvation = -23482.883295 eV Core-core repulsion = 20335.385375 eV Total energy + Delta-G solvation = -3147.497920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.36122 -39.75183 -36.71355 -36.11985 -34.63039 -32.83321 -31.10075 -30.05275 -28.70035 -28.55630 -26.48744 -25.31464 -23.86793 -21.93793 -21.72411 -19.99916 -18.92602 -18.45078 -18.16560 -16.91998 -16.38011 -16.22400 -15.96006 -15.60288 -15.27537 -14.94380 -14.81279 -14.41720 -14.10456 -14.06419 -13.67633 -13.39905 -13.23066 -13.18003 -13.10189 -12.93392 -12.71033 -12.65286 -12.46697 -12.31354 -12.22247 -12.02792 -11.65736 -11.37455 -11.23503 -11.05643 -10.67813 -10.32258 -10.03492 -9.31183 -8.79133 -7.83816 -5.13145 0.50186 1.33449 1.34867 1.47440 2.25425 2.47411 2.51349 3.34689 3.53133 3.79201 3.86125 3.92004 4.00347 4.11075 4.23629 4.33520 4.50236 4.54723 4.59684 4.62682 4.68851 4.69946 4.75233 4.78917 4.91055 4.91286 4.93080 5.01776 5.07924 5.15616 5.17543 5.24767 5.33002 5.54151 5.55100 5.65862 5.69851 5.73360 5.81848 5.85754 6.23815 6.72642 7.15796 7.46376 7.83930 8.46865 9.27247 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.008987 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.482483 B = 3114.980025 C = 4568.206145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 C -0.117 4.117 4 C -0.245 4.245 5 C 0.531 3.469 6 O -0.585 6.585 7 N -0.598 5.598 8 C 0.109 3.891 9 C -0.119 4.119 10 C -0.084 4.084 11 H 0.123 0.877 12 C -0.130 4.130 13 C 0.186 3.814 14 N -0.605 5.605 15 C -0.195 4.195 16 H 0.067 0.933 17 C -0.069 4.069 18 N -0.951 5.951 19 Si 0.955 3.045 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.141 3.859 24 H 0.024 0.976 25 C 0.118 3.882 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.030 0.970 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.006 0.994 40 H -0.003 1.003 41 H 0.241 0.759 42 H 0.049 0.951 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.750 7.110 11.122 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.038 4.038 3 C -0.173 4.173 4 C -0.266 4.266 5 C 0.324 3.676 6 O -0.468 6.468 7 N -0.329 5.329 8 C -0.013 4.013 9 C -0.157 4.157 10 C -0.103 4.103 11 H 0.141 0.859 12 C -0.168 4.168 13 C 0.061 3.939 14 N -0.330 5.330 15 C -0.325 4.325 16 H 0.085 0.915 17 C -0.261 4.261 18 N -0.603 5.603 19 Si 0.786 3.214 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.216 1.216 23 C 0.034 3.966 24 H 0.041 0.959 25 C -0.006 4.006 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.174 0.826 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.024 0.976 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.980 7.153 11.039 18.480 hybrid contribution -1.721 0.040 -0.934 1.958 sum 11.259 7.193 10.105 16.752 Atomic orbital electron populations 1.21129 0.92831 1.01873 1.02420 1.22881 0.96023 0.96155 0.88784 1.21033 1.00327 0.91893 1.04095 1.22558 1.01453 0.90836 1.11715 1.19141 0.86754 0.85468 0.76222 1.90705 1.15948 1.87624 1.52510 1.47875 1.09917 1.05759 1.69358 1.21993 0.78954 1.01442 0.98878 1.21802 1.01580 0.94545 0.97801 1.22424 0.94151 0.96523 0.97216 0.85887 1.23034 0.97418 0.99321 0.97033 1.20959 0.89109 0.94336 0.89503 1.44492 1.19961 1.66648 1.01872 1.19139 0.94948 1.26511 0.91921 0.91540 1.25318 1.01678 1.03386 0.95706 1.70159 1.39470 1.53665 0.96964 0.85312 0.81131 0.77925 0.77032 1.20688 1.22240 1.21620 1.21046 0.93410 0.95176 0.87005 0.95860 1.21190 0.97699 0.84115 0.97572 0.91271 0.90783 0.92968 0.89544 0.90283 0.88613 0.82610 0.88134 0.88301 0.87967 0.95107 0.89989 0.91401 0.97598 0.98473 0.94940 0.93233 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.47 71.24 0.60 -3.47 16 2 C -0.04 -0.99 6.11 -17.62 -0.11 -1.10 16 3 C -0.12 -1.93 10.06 71.24 0.72 -1.22 16 4 C -0.25 -7.28 9.00 23.43 0.21 -7.07 16 5 C 0.53 20.90 7.58 86.57 0.66 21.56 16 6 O -0.58 -28.23 12.61 -4.06 -0.05 -28.28 16 7 N -0.60 -20.94 2.97 -827.39 -2.45 -23.39 16 8 C 0.11 2.65 6.34 86.21 0.55 3.20 16 9 C -0.12 -3.32 5.04 30.57 0.15 -3.17 16 10 C -0.08 -2.51 3.68 -9.38 -0.03 -2.54 16 11 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 12 C -0.13 -4.50 6.33 32.16 0.20 -4.30 16 13 C 0.19 9.32 4.61 86.71 0.40 9.72 16 14 N -0.60 -31.52 3.20 -674.10 -2.15 -33.68 16 15 C -0.20 -11.72 9.70 84.03 0.81 -10.91 16 16 H 0.07 4.17 6.51 -2.91 -0.02 4.15 16 17 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 18 N -0.95 -60.62 10.38 21.65 0.22 -60.40 16 19 Si 0.96 51.59 29.55 68.60 2.03 53.61 16 20 H -0.28 -15.22 7.11 99.48 0.71 -14.51 16 21 H -0.29 -15.84 7.11 99.48 0.71 -15.13 16 22 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 23 C 0.14 5.60 2.97 44.77 0.13 5.74 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 C 0.12 4.47 5.69 85.76 0.49 4.96 16 26 H 0.07 2.24 8.08 -2.38 -0.02 2.22 16 27 H 0.07 1.94 7.93 -2.39 -0.02 1.92 16 28 H 0.05 2.23 6.02 -2.39 -0.01 2.21 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.13 7.86 -2.38 -0.02 1.12 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.16 3.42 5.95 -2.91 -0.02 3.40 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 2.02 5.43 -2.39 -0.01 2.01 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.18 6.85 -2.39 -0.02 1.16 16 37 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.01 0.33 7.04 -2.39 -0.02 0.31 16 40 H 0.00 -0.17 7.57 -2.39 -0.02 -0.19 16 41 H 0.24 15.05 8.31 -92.71 -0.77 14.27 16 42 H 0.05 2.32 5.52 -2.38 -0.01 2.31 16 43 H 0.09 2.68 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -80.57 327.25 3.83 -76.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.99 Total: 7.78 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.25 Total: 7.61 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -4.38 Total: -117.47 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.05 Total: -28.28 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.03 Total: 53.61 kcal Total: -80.57 3.83 -76.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.120 kcal (2) G-P(sol) polarization free energy of solvation -80.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds