Wall clock time and date at job start Tue Mar 31 2020 00:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50693 * 120.00025 * 2 1 4 4 C 1.32994 * 119.99733 * 180.02562 * 2 1 3 5 5 C 1.47099 * 120.00488 * 359.97438 * 4 2 1 6 6 O 1.21616 * 119.99691 * 6.43234 * 5 4 2 7 7 N 1.34781 * 120.00367 * 186.43692 * 5 4 2 8 8 C 1.46590 * 119.75374 * 175.01672 * 7 5 4 9 9 C 1.53887 * 110.71194 * 227.72176 * 8 7 5 10 10 C 1.51978 * 107.28838 * 308.19114 * 9 8 7 11 11 H 1.09003 * 111.55974 * 303.15480 * 10 9 8 12 12 C 1.53695 * 115.00942 * 175.44898 * 10 9 8 13 13 C 1.55249 * 101.71662 * 206.30754 * 12 10 9 14 14 N 1.48155 * 107.07136 * 22.82389 * 13 12 10 15 15 C 1.36930 * 126.40059 * 184.86193 * 14 13 12 16 16 H 1.07994 * 120.00475 * 177.15969 * 15 14 13 17 17 C 1.38815 * 119.99599 * 357.16443 * 15 14 13 18 18 N 1.31623 * 120.00211 * 153.10606 * 17 15 14 19 19 Si 1.86799 * 120.00132 * 333.10332 * 17 15 14 20 20 H 1.48497 * 109.47418 * 180.02562 * 19 17 15 21 21 H 1.48508 * 109.46964 * 300.00300 * 19 17 15 22 22 H 1.48498 * 109.47062 * 60.00243 * 19 17 15 23 23 C 1.45508 * 107.20431 * 4.60118 * 14 13 12 24 24 H 1.08997 * 109.57713 * 86.88792 * 23 14 13 25 25 C 1.47795 * 119.74771 * 354.99400 * 7 5 4 26 26 H 1.09000 * 109.47155 * 239.99741 * 1 2 3 27 27 H 1.08995 * 109.47562 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47596 * 120.00049 * 1 2 3 29 29 H 1.09004 * 109.47296 * 270.00205 * 3 2 1 30 30 H 1.09000 * 109.47416 * 30.00459 * 3 2 1 31 31 H 1.09001 * 109.47217 * 150.00002 * 3 2 1 32 32 H 1.08000 * 119.99806 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.23304 * 107.40315 * 8 7 5 34 34 H 1.09001 * 109.19652 * 348.01549 * 8 7 5 35 35 H 1.08999 * 109.89661 * 188.74378 * 9 8 7 36 36 H 1.09004 * 109.95655 * 67.67034 * 9 8 7 37 37 H 1.09005 * 110.95793 * 324.65795 * 12 10 9 38 38 H 1.08996 * 110.96409 * 88.36068 * 12 10 9 39 39 H 1.08999 * 110.02179 * 263.39820 * 13 12 10 40 40 H 1.09006 * 109.78445 * 142.11246 * 13 12 10 41 41 H 0.97002 * 119.99849 * 354.96874 * 18 17 15 42 42 H 1.08991 * 110.06862 * 9.54910 * 25 7 5 43 43 H 1.09001 * 110.06134 * 247.98281 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2260 -2.4290 -0.1180 7 7 2.1040 -3.5893 0.1298 8 6 1.3591 -4.8471 0.2392 9 6 1.8935 -5.6965 1.4059 10 6 3.3985 -5.8113 1.2286 11 1 3.6562 -6.2375 0.2590 12 6 4.1331 -6.5388 2.3659 13 6 5.5517 -5.9146 2.2749 14 7 5.4079 -4.6048 1.5976 15 6 6.4243 -3.7640 1.2302 16 1 6.2039 -2.8504 0.6983 17 6 7.7382 -4.0862 1.5415 18 7 8.7219 -3.6323 0.7940 19 14 8.1102 -5.1639 3.0212 20 1 9.5780 -5.3579 3.1359 21 1 7.6004 -4.5078 4.2521 22 1 7.4480 -6.4823 2.8524 23 6 3.9851 -4.3815 1.3900 24 1 3.5567 -3.9094 2.2740 25 6 3.5816 -3.5876 0.1608 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 2.4421 1.6197 -1.0277 30 1 1.6714 2.0647 0.5139 31 1 3.2129 1.1747 0.5138 32 1 3.2519 -1.1518 -0.0009 33 1 1.4626 -5.4077 -0.6898 34 1 0.3054 -4.6260 0.4094 35 1 1.4404 -6.6875 1.3812 36 1 1.6679 -5.2093 2.3546 37 1 3.6695 -6.3250 3.3290 38 1 4.1694 -7.6126 2.1826 39 1 6.2081 -6.5628 1.6945 40 1 5.9570 -5.7720 3.2768 41 1 8.5263 -3.1342 -0.0150 42 1 3.9529 -2.5657 0.2373 43 1 3.9750 -4.0634 -0.7375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041904559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:08 Heat of formation + Delta-G solvation = 21.178630 kcal Electronic energy + Delta-G solvation = -22752.987768 eV Core-core repulsion = 19606.694985 eV Total energy + Delta-G solvation = -3146.292784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29430 -38.64573 -35.86080 -34.98278 -33.21427 -31.70941 -29.67900 -29.17884 -27.86984 -27.57482 -24.39518 -23.98458 -22.43896 -20.85196 -20.06734 -19.47663 -17.94727 -17.32452 -17.01342 -15.47704 -15.22978 -15.05886 -14.85439 -14.15243 -14.09160 -13.89994 -13.52732 -13.36175 -13.21630 -12.85111 -12.69972 -12.38178 -12.31546 -12.21496 -11.83488 -11.69536 -11.48986 -11.42101 -11.09347 -10.98910 -10.52569 -10.48226 -10.11551 -9.90604 -9.55871 -9.31404 -9.12300 -8.88822 -8.50557 -8.34707 -7.14185 -6.37117 -3.20329 1.46339 3.18525 3.42250 3.45014 3.53305 3.70837 4.55564 4.63973 4.74899 4.85770 4.93365 5.05479 5.15739 5.19461 5.40948 5.42933 5.44542 5.49408 5.53012 5.60392 5.66681 5.73608 5.80081 5.83057 5.86734 5.87558 5.96411 6.06667 6.07494 6.14781 6.26247 6.32041 6.38804 6.50802 6.54955 6.57373 6.71932 6.82852 6.89583 7.56107 7.65897 8.28015 8.39391 8.97184 9.56517 10.22020 11.12197 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.005770 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.312339 B = 4851.851612 C = 6064.492434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.040 4.040 3 C -0.126 4.126 4 C -0.234 4.234 5 C 0.548 3.452 6 O -0.555 6.555 7 N -0.604 5.604 8 C 0.115 3.885 9 C -0.118 4.118 10 C -0.112 4.112 11 H 0.081 0.919 12 C -0.124 4.124 13 C 0.121 3.879 14 N -0.600 5.600 15 C -0.332 4.332 16 H 0.080 0.920 17 C -0.012 4.012 18 N -0.915 5.915 19 Si 1.034 2.966 20 H -0.300 1.300 21 H -0.297 1.297 22 H -0.270 1.270 23 C 0.155 3.845 24 H 0.028 0.972 25 C 0.112 3.888 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.088 0.912 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.561 1.172 -0.580 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.042 4.042 3 C -0.183 4.183 4 C -0.254 4.254 5 C 0.340 3.660 6 O -0.437 6.437 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.156 4.156 10 C -0.132 4.132 11 H 0.099 0.901 12 C -0.162 4.162 13 C -0.004 4.004 14 N -0.327 5.327 15 C -0.458 4.458 16 H 0.098 0.902 17 C -0.213 4.213 18 N -0.555 5.555 19 Si 0.866 3.134 20 H -0.228 1.228 21 H -0.225 1.225 22 H -0.196 1.196 23 C 0.046 3.954 24 H 0.045 0.955 25 C -0.011 4.011 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.841 0.582 0.219 13.855 hybrid contribution -0.918 0.652 -0.754 1.355 sum -14.759 1.234 -0.535 14.820 Atomic orbital electron populations 1.21010 0.91006 1.00705 1.04202 1.22536 0.96705 0.94498 0.90500 1.21011 1.00284 0.94191 1.02813 1.22602 1.00674 0.91931 1.10198 1.18554 0.86906 0.84358 0.76212 1.90710 1.14169 1.87499 1.51284 1.48139 1.07343 1.06266 1.71943 1.21503 0.96736 0.84343 0.98201 1.21790 0.95743 0.99587 0.98528 1.22291 0.93602 0.97899 0.99432 0.90086 1.22473 0.96509 0.99108 0.98117 1.22394 0.94735 0.87597 0.95654 1.44527 1.00432 1.18265 1.69450 1.20005 0.85930 1.04049 1.35823 0.90184 1.25639 0.90734 1.01463 1.03480 1.70928 1.32913 1.37485 1.14156 0.84539 0.74622 0.77203 0.77059 1.22769 1.22541 1.19641 1.20965 0.86444 0.93170 0.94817 0.95489 1.21866 0.77077 1.02493 0.99646 0.90449 0.93215 0.89834 0.90431 0.91156 0.90917 0.85081 0.92133 0.89468 0.90781 0.91426 0.91643 0.91452 0.93266 0.95348 0.92752 0.89340 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 8.33 36.00 0.30 -1.09 16 2 C -0.04 -0.51 6.11 -101.17 -0.62 -1.13 16 3 C -0.13 -1.25 9.98 36.00 0.36 -0.89 16 4 C -0.23 -3.43 8.92 -37.81 -0.34 -3.77 16 5 C 0.55 9.01 7.56 -12.66 -0.10 8.91 16 6 O -0.56 -9.83 12.49 5.26 0.07 -9.77 16 7 N -0.60 -9.64 3.01 -174.14 -0.52 -10.17 16 8 C 0.11 1.60 6.31 -3.53 -0.02 1.58 16 9 C -0.12 -1.55 5.72 -26.79 -0.15 -1.71 16 10 C -0.11 -1.79 2.61 -89.51 -0.23 -2.02 16 11 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 12 C -0.12 -2.01 6.54 -25.18 -0.16 -2.17 16 13 C 0.12 2.53 4.51 -1.94 -0.01 2.52 16 14 N -0.60 -13.94 3.30 -162.93 -0.54 -14.47 16 15 C -0.33 -8.95 10.07 -15.06 -0.15 -9.10 16 16 H 0.08 2.23 7.62 -52.49 -0.40 1.83 16 17 C -0.01 -0.35 5.46 -17.43 -0.10 -0.44 16 18 N -0.91 -27.80 13.70 55.49 0.76 -27.04 16 19 Si 1.03 25.38 25.22 -169.99 -4.29 21.10 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -5.94 4.66 56.52 0.26 -5.67 16 23 C 0.15 2.97 2.76 -67.81 -0.19 2.78 16 24 H 0.03 0.56 7.93 -51.93 -0.41 0.15 16 25 C 0.11 1.96 5.59 -3.95 -0.02 1.94 16 26 H 0.08 1.05 7.41 -51.93 -0.38 0.66 16 27 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 28 H 0.08 1.13 7.05 -51.93 -0.37 0.76 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 31 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 32 H 0.13 1.91 5.84 -52.49 -0.31 1.61 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 37 H 0.06 0.99 8.12 -51.93 -0.42 0.56 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.09 6.65 -51.93 -0.35 0.74 16 40 H 0.03 0.63 4.83 -51.93 -0.25 0.37 16 41 H 0.26 7.86 8.73 -40.82 -0.36 7.51 16 42 H 0.09 1.58 5.03 -51.93 -0.26 1.32 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -30.92 324.15 -8.07 -38.99 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.00 Total: 1.07 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.43 Total: -4.59 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.30 Total: -51.67 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.29 Total: 21.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.92 -8.07 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.165 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds