Wall clock time and date at job start Tue Mar 31 2020 00:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50693 * 120.00025 * 2 1 4 4 C 1.32994 * 119.99733 * 180.02562 * 2 1 3 5 5 C 1.47099 * 120.00488 * 359.97438 * 4 2 1 6 6 O 1.21616 * 119.99691 * 6.43234 * 5 4 2 7 7 N 1.34781 * 120.00367 * 186.43692 * 5 4 2 8 8 C 1.46590 * 119.75374 * 175.01672 * 7 5 4 9 9 C 1.53887 * 110.71194 * 227.72176 * 8 7 5 10 10 C 1.51978 * 107.28838 * 308.19114 * 9 8 7 11 11 H 1.09003 * 111.55974 * 303.15480 * 10 9 8 12 12 C 1.53695 * 115.00942 * 175.44898 * 10 9 8 13 13 C 1.55249 * 101.71662 * 206.30754 * 12 10 9 14 14 N 1.48155 * 107.07136 * 22.82389 * 13 12 10 15 15 C 1.36930 * 126.40059 * 184.86193 * 14 13 12 16 16 H 1.07994 * 120.00475 * 177.15969 * 15 14 13 17 17 C 1.38815 * 119.99599 * 357.16443 * 15 14 13 18 18 N 1.31623 * 120.00211 * 153.10606 * 17 15 14 19 19 Si 1.86799 * 120.00132 * 333.10332 * 17 15 14 20 20 H 1.48497 * 109.47418 * 180.02562 * 19 17 15 21 21 H 1.48508 * 109.46964 * 300.00300 * 19 17 15 22 22 H 1.48498 * 109.47062 * 60.00243 * 19 17 15 23 23 C 1.45508 * 107.20431 * 4.60118 * 14 13 12 24 24 H 1.08997 * 109.57713 * 86.88792 * 23 14 13 25 25 C 1.47795 * 119.74771 * 354.99400 * 7 5 4 26 26 H 1.09000 * 109.47155 * 239.99741 * 1 2 3 27 27 H 1.08995 * 109.47562 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47596 * 120.00049 * 1 2 3 29 29 H 1.09004 * 109.47296 * 270.00205 * 3 2 1 30 30 H 1.09000 * 109.47416 * 30.00459 * 3 2 1 31 31 H 1.09001 * 109.47217 * 150.00002 * 3 2 1 32 32 H 1.08000 * 119.99806 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.23304 * 107.40315 * 8 7 5 34 34 H 1.09001 * 109.19652 * 348.01549 * 8 7 5 35 35 H 1.08999 * 109.89661 * 188.74378 * 9 8 7 36 36 H 1.09004 * 109.95655 * 67.67034 * 9 8 7 37 37 H 1.09005 * 110.95793 * 324.65795 * 12 10 9 38 38 H 1.08996 * 110.96409 * 88.36068 * 12 10 9 39 39 H 1.08999 * 110.02179 * 263.39820 * 13 12 10 40 40 H 1.09006 * 109.78445 * 142.11246 * 13 12 10 41 41 H 0.97002 * 119.99849 * 354.96874 * 18 17 15 42 42 H 1.08991 * 110.06862 * 9.54910 * 25 7 5 43 43 H 1.09001 * 110.06134 * 247.98281 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2260 -2.4290 -0.1180 7 7 2.1040 -3.5893 0.1298 8 6 1.3591 -4.8471 0.2392 9 6 1.8935 -5.6965 1.4059 10 6 3.3985 -5.8113 1.2286 11 1 3.6562 -6.2375 0.2590 12 6 4.1331 -6.5388 2.3659 13 6 5.5517 -5.9146 2.2749 14 7 5.4079 -4.6048 1.5976 15 6 6.4243 -3.7640 1.2302 16 1 6.2039 -2.8504 0.6983 17 6 7.7382 -4.0862 1.5415 18 7 8.7219 -3.6323 0.7940 19 14 8.1102 -5.1639 3.0212 20 1 9.5780 -5.3579 3.1359 21 1 7.6004 -4.5078 4.2521 22 1 7.4480 -6.4823 2.8524 23 6 3.9851 -4.3815 1.3900 24 1 3.5567 -3.9094 2.2740 25 6 3.5816 -3.5876 0.1608 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 2.4421 1.6197 -1.0277 30 1 1.6714 2.0647 0.5139 31 1 3.2129 1.1747 0.5138 32 1 3.2519 -1.1518 -0.0009 33 1 1.4626 -5.4077 -0.6898 34 1 0.3054 -4.6260 0.4094 35 1 1.4404 -6.6875 1.3812 36 1 1.6679 -5.2093 2.3546 37 1 3.6695 -6.3250 3.3290 38 1 4.1694 -7.6126 2.1826 39 1 6.2081 -6.5628 1.6945 40 1 5.9570 -5.7720 3.2768 41 1 8.5263 -3.1342 -0.0150 42 1 3.9529 -2.5657 0.2373 43 1 3.9750 -4.0634 -0.7375 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041904559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:07 Heat of formation + Delta-G solvation = 2.042090 kcal Electronic energy + Delta-G solvation = -22753.817591 eV Core-core repulsion = 19606.694985 eV Total energy + Delta-G solvation = -3147.122606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.60674 -40.03642 -37.16345 -36.21055 -34.91543 -33.38296 -31.12116 -30.71373 -28.89327 -28.63460 -25.97107 -25.62341 -23.72979 -22.29583 -21.60193 -20.74386 -19.39337 -19.02706 -18.31780 -16.97426 -16.56306 -16.52461 -16.33519 -15.49995 -15.33654 -15.13358 -14.87882 -14.78829 -14.65996 -14.42742 -13.92425 -13.62541 -13.41265 -13.31909 -13.12591 -13.10366 -12.92028 -12.63495 -12.46426 -12.36803 -12.07349 -11.87578 -11.62581 -11.58991 -11.24201 -10.81483 -10.53840 -10.43827 -10.24829 -9.61935 -9.11338 -8.59966 -5.34522 0.33926 1.46388 1.54871 1.74181 1.94136 2.20664 2.62093 3.03652 3.26282 3.50387 3.70841 3.79983 3.85902 3.88964 4.06516 4.13986 4.22622 4.29896 4.36503 4.48181 4.49875 4.59210 4.64089 4.71765 4.75792 4.77993 4.85318 4.86190 4.91421 4.97628 5.05134 5.07889 5.10498 5.16306 5.25377 5.43258 5.48451 5.52118 5.60870 5.68550 6.13758 6.31065 6.84349 7.12460 7.53462 8.18601 8.91595 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.005770 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.312339 B = 4851.851612 C = 6064.492434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.021 4.021 3 C -0.127 4.127 4 C -0.267 4.267 5 C 0.543 3.457 6 O -0.572 6.572 7 N -0.605 5.605 8 C 0.110 3.890 9 C -0.105 4.105 10 C -0.100 4.100 11 H 0.079 0.921 12 C -0.111 4.111 13 C 0.106 3.894 14 N -0.619 5.619 15 C -0.311 4.311 16 H 0.056 0.944 17 C -0.070 4.070 18 N -0.956 5.956 19 Si 1.069 2.931 20 H -0.316 1.316 21 H -0.294 1.294 22 H -0.226 1.226 23 C 0.145 3.855 24 H 0.019 0.981 25 C 0.123 3.877 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.025 0.975 41 H 0.249 0.751 42 H 0.077 0.923 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.913 0.005 0.309 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.023 4.023 3 C -0.183 4.183 4 C -0.288 4.288 5 C 0.336 3.664 6 O -0.455 6.455 7 N -0.337 5.337 8 C -0.012 4.012 9 C -0.143 4.143 10 C -0.119 4.119 11 H 0.097 0.903 12 C -0.148 4.148 13 C -0.018 4.018 14 N -0.345 5.345 15 C -0.439 4.439 16 H 0.074 0.926 17 C -0.265 4.265 18 N -0.599 5.599 19 Si 0.897 3.103 20 H -0.245 1.245 21 H -0.222 1.222 22 H -0.150 1.150 23 C 0.037 3.963 24 H 0.036 0.964 25 C 0.000 4.000 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.259 -0.615 1.112 16.308 hybrid contribution -0.299 1.161 -1.082 1.615 sum -16.558 0.546 0.030 16.567 Atomic orbital electron populations 1.20984 0.90479 1.02296 1.02892 1.22937 0.97228 0.95067 0.87106 1.21104 1.00025 0.93111 1.04047 1.22569 1.00406 0.92231 1.13578 1.18826 0.86848 0.84930 0.75821 1.90695 1.14647 1.87769 1.52340 1.48159 1.06474 1.07171 1.71922 1.21697 0.96531 0.83669 0.99321 1.21743 0.93476 1.01273 0.97840 1.22231 0.95273 0.94897 0.99531 0.90267 1.22466 0.92937 1.00533 0.98905 1.22568 0.98094 0.86444 0.94694 1.44622 1.01399 1.18786 1.69721 1.19934 0.87061 1.03454 1.33488 0.92586 1.26742 0.91104 1.03246 1.05390 1.71026 1.33850 1.40181 1.14867 0.84140 0.73798 0.78271 0.74119 1.24464 1.22188 1.14966 1.21151 0.84390 0.96021 0.94739 0.96387 1.21586 0.78270 1.01564 0.98590 0.91701 0.90147 0.91087 0.88829 0.88862 0.91414 0.85825 0.90999 0.89349 0.87136 0.91614 0.89975 0.88235 0.94347 0.95703 0.94198 0.90522 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 8.33 71.23 0.59 -1.96 16 2 C -0.02 -0.52 6.11 -17.62 -0.11 -0.63 16 3 C -0.13 -2.27 9.98 71.23 0.71 -1.56 16 4 C -0.27 -7.95 8.92 23.43 0.21 -7.75 16 5 C 0.54 17.82 7.56 86.57 0.65 18.47 16 6 O -0.57 -20.00 12.49 -4.08 -0.05 -20.06 16 7 N -0.61 -18.99 3.01 -823.09 -2.48 -21.46 16 8 C 0.11 2.82 6.31 86.66 0.55 3.37 16 9 C -0.11 -2.38 5.72 30.56 0.17 -2.20 16 10 C -0.10 -2.88 2.61 -10.08 -0.03 -2.90 16 11 H 0.08 2.36 8.13 -2.39 -0.02 2.34 16 12 C -0.11 -3.13 6.54 31.60 0.21 -2.92 16 13 C 0.11 4.20 4.51 86.83 0.39 4.59 16 14 N -0.62 -28.50 3.30 -669.39 -2.21 -30.71 16 15 C -0.31 -17.22 10.07 84.04 0.85 -16.37 16 16 H 0.06 3.29 7.62 -2.91 -0.02 3.27 16 17 C -0.07 -4.09 5.46 84.86 0.46 -3.63 16 18 N -0.96 -60.31 13.70 21.65 0.30 -60.01 16 19 Si 1.07 51.43 25.22 68.60 1.73 53.16 16 20 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 22 H -0.23 -9.25 4.66 99.48 0.46 -8.78 16 23 C 0.14 5.43 2.76 45.60 0.13 5.56 16 24 H 0.02 0.74 7.93 -2.39 -0.02 0.72 16 25 C 0.12 4.37 5.59 85.73 0.48 4.85 16 26 H 0.06 1.70 7.41 -2.39 -0.02 1.68 16 27 H 0.08 1.35 7.94 -2.39 -0.02 1.33 16 28 H 0.07 1.86 7.05 -2.38 -0.02 1.84 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 31 H 0.07 1.31 8.07 -2.39 -0.02 1.29 16 32 H 0.12 3.80 5.84 -2.91 -0.02 3.78 16 33 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.09 2.30 7.00 -2.39 -0.02 2.29 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.56 7.98 -2.38 -0.02 1.54 16 37 H 0.08 2.09 8.12 -2.38 -0.02 2.07 16 38 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 40 H 0.03 1.03 4.83 -2.38 -0.01 1.01 16 41 H 0.25 15.73 8.73 -92.71 -0.81 14.92 16 42 H 0.08 2.87 5.03 -2.39 -0.01 2.86 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -69.34 324.15 3.27 -66.07 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.71 Total: 16.09 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.27 Total: -3.09 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.39 Total: -112.18 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 1.73 Total: 53.16 kcal Total: -69.34 3.27 -66.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041904559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.117 kcal (2) G-P(sol) polarization free energy of solvation -69.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds