Wall clock time and date at job start Tue Mar 31 2020 00:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50700 * 120.00019 * 2 1 4 4 C 1.32994 * 120.00158 * 180.02562 * 2 1 3 5 5 C 1.47101 * 120.00173 * 5.23396 * 4 2 1 6 6 O 1.21622 * 119.99680 * 354.93775 * 5 4 2 7 7 N 1.34774 * 120.00170 * 174.93286 * 5 4 2 8 8 C 1.44782 * 120.17905 * 0.02562 * 7 5 4 9 9 C 1.51520 * 112.21866 * 264.52882 * 8 7 5 10 10 C 1.51312 * 113.25560 * 285.36890 * 9 8 7 11 11 H 1.08992 * 111.99567 * 185.69741 * 10 9 8 12 12 C 1.54717 * 106.47952 * 307.66216 * 10 9 8 13 13 C 1.54241 * 104.37423 * 89.11411 * 12 10 9 14 14 C 1.50871 * 105.27160 * 11.56436 * 13 12 10 15 15 H 1.09005 * 105.89952 * 122.19537 * 14 13 12 16 16 C 1.49816 * 120.17983 * 179.97438 * 7 5 4 17 17 N 1.48062 * 109.91051 * 7.86744 * 14 13 12 18 18 C 1.36935 * 127.84187 * 155.19245 * 17 14 13 19 19 H 1.07997 * 120.00076 * 349.28262 * 18 17 14 20 20 C 1.38812 * 119.99777 * 169.27317 * 18 17 14 21 21 N 1.31622 * 120.00455 * 350.94755 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 170.94685 * 20 18 17 23 23 H 1.48506 * 109.47126 * 94.91131 * 22 20 18 24 24 H 1.48501 * 109.47313 * 214.91440 * 22 20 18 25 25 H 1.48502 * 109.47004 * 334.91672 * 22 20 18 26 26 H 1.09000 * 109.47262 * 239.38555 * 1 2 3 27 27 H 1.08995 * 109.47270 * 359.38311 * 1 2 3 28 28 H 1.09002 * 109.47182 * 119.38530 * 1 2 3 29 29 H 1.09001 * 109.47125 * 270.00168 * 3 2 1 30 30 H 1.09005 * 109.47168 * 29.99548 * 3 2 1 31 31 H 1.08994 * 109.47335 * 149.99999 * 3 2 1 32 32 H 1.07997 * 120.00262 * 185.24206 * 4 2 1 33 33 H 1.08995 * 108.93685 * 25.23528 * 8 7 5 34 34 H 1.09002 * 108.93374 * 143.83104 * 8 7 5 35 35 H 1.09003 * 108.72503 * 46.34312 * 9 8 7 36 36 H 1.08998 * 108.72680 * 164.38916 * 9 8 7 37 37 H 1.08995 * 110.45291 * 207.83322 * 12 10 9 38 38 H 1.08998 * 110.45424 * 330.26612 * 12 10 9 39 39 H 1.08997 * 110.28542 * 252.61428 * 13 12 10 40 40 H 1.08997 * 110.28286 * 130.50987 * 13 12 10 41 41 H 1.08993 * 109.54780 * 270.58149 * 16 7 5 42 42 H 1.09003 * 109.54465 * 30.85482 * 16 7 5 43 43 H 0.96988 * 120.00169 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4412 -2.4230 -0.1173 6 8 0.2249 -2.4271 -0.1206 7 7 2.1193 -3.5831 -0.2207 8 6 3.5671 -3.5828 -0.2167 9 6 4.1439 -3.5896 -1.6177 10 6 4.0310 -4.9336 -2.3037 11 1 4.5390 -4.9437 -3.2680 12 6 4.6408 -5.9738 -1.3343 13 6 3.4543 -6.4200 -0.4556 14 6 2.2265 -5.8638 -1.1334 15 1 1.5886 -6.7216 -1.3465 16 6 1.3790 -4.8802 -0.3392 17 7 2.5937 -5.2855 -2.4461 18 6 1.7912 -5.1132 -3.5422 19 1 0.8122 -5.5682 -3.5716 20 6 2.2361 -4.3537 -4.6155 21 7 3.3464 -3.6545 -4.5118 22 14 1.2590 -4.3239 -6.2074 23 1 0.3494 -3.1499 -6.2080 24 1 2.1916 -4.2281 -7.3590 25 1 0.4590 -5.5699 -6.3205 26 1 -0.3634 -0.5233 0.8844 27 1 -0.3633 1.0275 0.0111 28 1 -0.3634 -0.5043 -0.8955 29 1 2.4421 1.6198 -1.0277 30 1 1.6714 2.0648 0.5138 31 1 3.2129 1.1748 0.5138 32 1 3.2486 -1.1538 0.0849 33 1 3.9191 -2.6936 0.3063 34 1 3.9195 -4.4666 0.3151 35 1 3.6180 -2.8459 -2.2164 36 1 5.1964 -3.3113 -1.5642 37 1 5.0436 -6.8211 -1.8890 38 1 5.4183 -5.5152 -0.7234 39 1 3.5513 -6.0070 0.5485 40 1 3.4029 -7.5079 -0.4142 41 1 1.1877 -5.2832 0.6553 42 1 0.4332 -4.7145 -0.8551 43 1 3.6574 -3.1241 -5.2619 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045701149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:47 Heat of formation + Delta-G solvation = 2.837693 kcal Electronic energy + Delta-G solvation = -23616.689987 eV Core-core repulsion = 20469.601881 eV Total energy + Delta-G solvation = -3147.088106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.48506 -39.81169 -36.41470 -35.81038 -34.46941 -33.64489 -31.13513 -29.61070 -28.65230 -28.08202 -27.34251 -25.76617 -23.65590 -21.76566 -21.03182 -20.26649 -18.94394 -18.51841 -18.17173 -17.10127 -16.35594 -16.19859 -16.01006 -15.65793 -15.23508 -14.88901 -14.70845 -14.36225 -14.05158 -13.79406 -13.53541 -13.34748 -13.24669 -13.07382 -13.02707 -12.88331 -12.69347 -12.60061 -12.47211 -12.43176 -12.11576 -11.88240 -11.69252 -11.39558 -11.27900 -10.81572 -10.62769 -10.30112 -10.09631 -9.31201 -8.72055 -7.83552 -5.13824 0.49781 1.39717 1.41666 1.49073 2.16210 2.47220 2.53869 3.32815 3.63800 3.78015 3.91722 3.97472 4.06435 4.12540 4.28081 4.35110 4.45654 4.55765 4.59643 4.68397 4.72725 4.74520 4.79027 4.82117 4.89641 4.93262 5.03016 5.06433 5.15131 5.17379 5.24990 5.33970 5.42298 5.50929 5.53347 5.55976 5.64894 5.81817 5.87667 6.13713 6.28665 6.73877 7.14753 7.38577 7.79151 8.55586 9.26575 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.007951 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.058006 B = 3520.924864 C = 4455.474269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.041 4.041 3 C -0.117 4.117 4 C -0.244 4.244 5 C 0.529 3.471 6 O -0.597 6.597 7 N -0.586 5.586 8 C 0.107 3.893 9 C -0.129 4.129 10 C 0.176 3.824 11 H 0.056 0.944 12 C -0.132 4.132 13 C -0.105 4.105 14 C 0.130 3.870 15 H 0.028 0.972 16 C 0.121 3.879 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.061 0.939 20 C -0.054 4.054 21 N -0.925 5.925 22 Si 0.959 3.041 23 H -0.300 1.300 24 H -0.289 1.289 25 H -0.275 1.275 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 3.532 12.762 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.043 4.043 3 C -0.174 4.174 4 C -0.265 4.265 5 C 0.322 3.678 6 O -0.481 6.481 7 N -0.316 5.316 8 C -0.016 4.016 9 C -0.169 4.169 10 C 0.070 3.930 11 H 0.075 0.925 12 C -0.171 4.171 13 C -0.142 4.142 14 C 0.023 3.977 15 H 0.046 0.954 16 C -0.003 4.003 17 N -0.321 5.321 18 C -0.352 4.352 19 H 0.079 0.921 20 C -0.248 4.248 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.228 1.228 24 H -0.215 1.215 25 H -0.200 1.200 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.162 0.838 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.956 3.554 12.512 13.595 hybrid contribution -0.903 0.021 -1.645 1.876 sum 3.054 3.576 10.867 11.840 Atomic orbital electron populations 1.20905 0.91905 1.01594 1.02071 1.22909 0.96589 0.95811 0.88967 1.21032 1.00427 0.92409 1.03497 1.22594 1.00933 0.91341 1.11586 1.19137 0.87026 0.85510 0.76165 1.90667 1.15498 1.87825 1.54142 1.48099 1.07525 1.05803 1.70185 1.21349 0.78746 1.04119 0.97358 1.21756 0.99161 1.00407 0.95614 1.21007 0.84280 0.91724 0.95955 0.92541 1.22764 0.97538 0.98930 0.97822 1.21766 0.92733 1.00802 0.98932 1.20826 0.96550 0.93475 0.86885 0.95414 1.22362 0.94978 0.83741 0.99259 1.45201 1.07081 1.71983 1.07869 1.19028 0.98042 1.24752 0.93416 0.92117 1.25325 0.99469 0.98769 1.01248 1.70059 1.24091 1.32826 1.30351 0.85356 0.77708 0.77262 0.80750 1.22772 1.21489 1.20021 0.91516 0.90298 0.93493 0.90090 0.89142 0.89622 0.83832 0.89484 0.88179 0.94746 0.91763 0.92620 0.88835 0.88858 0.89976 0.90324 0.94563 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.39 8.34 71.24 0.59 -2.79 16 2 C -0.04 -1.19 6.11 -17.62 -0.11 -1.30 16 3 C -0.12 -2.29 9.98 71.24 0.71 -1.58 16 4 C -0.24 -8.17 8.84 23.43 0.21 -7.97 16 5 C 0.53 22.07 7.61 86.57 0.66 22.73 16 6 O -0.60 -28.46 12.76 -4.10 -0.05 -28.51 16 7 N -0.59 -22.89 2.86 -825.98 -2.37 -25.25 16 8 C 0.11 3.46 4.96 86.22 0.43 3.88 16 9 C -0.13 -5.13 4.82 29.56 0.14 -4.99 16 10 C 0.18 7.71 2.87 44.61 0.13 7.84 16 11 H 0.06 2.96 6.54 -2.39 -0.02 2.94 16 12 C -0.13 -4.18 6.01 31.60 0.19 -3.99 16 13 C -0.10 -3.03 5.78 30.32 0.18 -2.86 16 14 C 0.13 5.10 2.62 43.74 0.11 5.21 16 15 H 0.03 1.13 8.10 -2.38 -0.02 1.11 16 16 C 0.12 4.78 6.03 85.47 0.52 5.30 16 17 N -0.60 -29.40 2.69 -650.43 -1.75 -31.15 16 18 C -0.22 -12.68 10.35 84.03 0.87 -11.81 16 19 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 20 C -0.05 -3.07 5.43 84.86 0.46 -2.61 16 21 N -0.93 -53.79 9.63 21.65 0.21 -53.58 16 22 Si 0.96 47.51 29.56 68.60 2.03 49.53 16 23 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H 0.07 2.22 7.37 -2.39 -0.02 2.20 16 27 H 0.08 1.87 7.94 -2.39 -0.02 1.85 16 28 H 0.05 1.82 7.08 -2.39 -0.02 1.80 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.36 8.04 -2.38 -0.02 1.34 16 31 H 0.08 1.39 8.06 -2.39 -0.02 1.37 16 32 H 0.14 4.07 6.08 -2.91 -0.02 4.06 16 33 H 0.09 2.35 5.73 -2.39 -0.01 2.34 16 34 H 0.10 2.71 3.93 -2.39 -0.01 2.70 16 35 H 0.03 1.73 7.14 -2.39 -0.02 1.71 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 2.35 7.39 -2.39 -0.02 2.34 16 39 H 0.09 2.19 6.14 -2.39 -0.01 2.18 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.04 1.72 7.53 -2.39 -0.02 1.70 16 43 H 0.24 13.97 8.31 -92.72 -0.77 13.20 16 Total: -1.00 -71.86 322.52 4.15 -67.71 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.00 Total: 16.20 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.09 Total: 5.06 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -3.91 Total: -109.99 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.05 Total: -28.51 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -71.86 4.15 -67.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045701149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.549 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds