Wall clock time and date at job start Tue Mar 31 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 115.55245 * 29.41643 * 3 2 1 5 5 C 1.52998 * 117.50310 * 243.74949 * 3 2 1 6 6 C 1.52996 * 117.50163 * 175.08923 * 3 2 1 7 7 H 1.09002 * 117.49721 * 359.97438 * 6 3 2 8 8 C 1.50704 * 117.50029 * 214.97809 * 6 3 2 9 9 O 1.21277 * 119.99975 * 0.02562 * 8 6 3 10 10 N 1.34772 * 119.99968 * 179.97438 * 8 6 3 11 11 C 1.46671 * 125.34153 * 180.02562 * 10 8 6 12 12 C 1.53725 * 107.94707 * 180.54819 * 11 10 8 13 13 H 1.08994 * 112.55978 * 139.72184 * 12 11 10 14 14 C 1.53694 * 109.33716 * 266.25356 * 12 11 10 15 15 N 1.47173 * 107.73075 * 128.69774 * 14 12 11 16 16 C 1.36938 * 125.25176 * 180.39493 * 15 14 12 17 17 H 1.08004 * 119.99475 * 179.13424 * 16 15 14 18 18 C 1.38812 * 120.00021 * 359.14055 * 16 15 14 19 19 N 1.31615 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47108 * 59.99585 * 20 18 16 22 22 H 1.48501 * 109.46879 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47232 * 299.99439 * 20 18 16 24 24 C 1.46748 * 109.41253 * 359.64856 * 15 14 12 25 25 C 1.53934 * 106.71742 * 342.40756 * 24 15 14 26 26 H 1.09006 * 113.00727 * 150.83293 * 25 24 15 27 27 C 1.46783 * 125.34107 * 359.70028 * 10 8 6 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09000 * 117.49561 * 359.97438 * 5 3 2 34 34 H 1.09001 * 117.50251 * 144.99144 * 5 3 2 35 35 H 1.09008 * 109.77025 * 300.17315 * 11 10 8 36 36 H 1.09000 * 109.76612 * 60.92118 * 11 10 8 37 37 H 1.09001 * 109.75878 * 247.19800 * 14 12 11 38 38 H 1.08997 * 109.76456 * 7.91419 * 14 12 11 39 39 H 0.96996 * 119.99837 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.00772 * 223.09475 * 24 15 14 41 41 H 1.08995 * 110.04475 * 101.74613 * 24 15 14 42 42 H 1.09005 * 110.02523 * 280.77648 * 27 10 8 43 43 H 1.09007 * 110.02331 * 42.18466 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3890 2.1713 0.4830 5 6 2.8414 1.9085 -1.2171 6 6 3.5502 1.6579 0.1162 7 1 4.1805 0.7719 0.1930 8 6 4.0240 2.8617 0.8892 9 8 3.2177 3.6158 1.3912 10 7 5.3438 3.0996 1.0236 11 6 5.9325 4.2306 1.7484 12 6 7.4617 4.1203 1.6369 13 1 7.9403 5.0867 1.4791 14 6 8.0085 3.3707 2.8622 15 7 8.8752 2.2860 2.3741 16 6 9.5417 1.3897 3.1663 17 1 10.1461 0.6162 2.7160 18 6 9.4404 1.4753 4.5481 19 7 8.7042 2.4182 5.0968 20 14 10.3490 0.2521 5.6287 21 1 11.8079 0.3505 5.3690 22 1 10.0792 0.5573 7.0567 23 1 9.8829 -1.1234 5.3194 24 6 8.8994 2.3038 0.9070 25 6 7.6874 3.1378 0.4542 26 1 7.8489 3.6416 -0.4989 27 6 6.4175 2.2637 0.4732 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.0057 1.1873 -2.0177 34 1 2.7177 2.9438 -1.5349 35 1 5.5971 5.1679 1.3043 36 1 5.6353 4.1918 2.7963 37 1 8.6019 4.0495 3.4749 38 1 7.1815 2.9718 3.4496 39 1 8.6337 2.4782 6.0624 40 1 8.8185 1.2879 0.5203 41 1 9.8220 2.7646 0.5541 42 1 6.5717 1.3896 1.1059 43 1 6.1653 1.9516 -0.5403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049069790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:12 Heat of formation + Delta-G solvation = 9.788247 kcal Electronic energy + Delta-G solvation = -22228.992841 eV Core-core repulsion = 19082.206133 eV Total energy + Delta-G solvation = -3146.786708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.26960 -38.73160 -36.80829 -34.86929 -32.35775 -32.08100 -30.35422 -29.39994 -26.06227 -25.47723 -24.33152 -23.77203 -22.25105 -20.57234 -20.11529 -19.28066 -18.85634 -17.16277 -16.69256 -16.09215 -15.37740 -14.83639 -14.59125 -14.53699 -14.24410 -13.73815 -13.33349 -13.00795 -12.97847 -12.50963 -12.41254 -12.24643 -11.99973 -11.89484 -11.49590 -11.46372 -11.42135 -11.14827 -10.90973 -10.81125 -10.42926 -10.32694 -10.16727 -10.11869 -10.04858 -9.83826 -9.64996 -9.55420 -8.61873 -8.28053 -6.85746 -5.73752 -3.07818 2.67278 3.21850 3.39136 3.43514 3.45164 3.80384 4.44882 4.48155 4.68571 4.71775 4.82991 4.95418 5.06304 5.18814 5.23478 5.26086 5.32574 5.49243 5.52882 5.59537 5.63884 5.67408 5.72186 5.80111 5.86763 5.89828 5.95202 5.98233 6.00133 6.18442 6.27414 6.29095 6.39099 6.55153 6.57756 6.65770 6.80841 7.54202 7.56437 7.79461 7.82742 8.23913 8.41847 9.19306 9.80399 10.44109 11.37660 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.004370 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.601638 B = 6405.751165 C = 6994.356056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.184 4.184 7 H 0.123 0.877 8 C 0.555 3.445 9 O -0.551 6.551 10 N -0.603 5.603 11 C 0.120 3.880 12 C -0.123 4.123 13 H 0.090 0.910 14 C 0.185 3.815 15 N -0.603 5.603 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.147 3.853 25 C -0.111 4.111 26 H 0.088 0.912 27 C 0.113 3.887 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.253 0.747 40 H 0.036 0.964 41 H 0.021 0.979 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 -1.470 -13.264 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.137 4.137 4 H 0.135 0.865 5 C -0.187 4.187 6 C -0.205 4.205 7 H 0.141 0.859 8 C 0.344 3.656 9 O -0.430 6.430 10 N -0.336 5.336 11 C -0.002 4.002 12 C -0.143 4.143 13 H 0.109 0.891 14 C 0.061 3.939 15 N -0.330 5.330 16 C -0.361 4.361 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.020 3.980 25 C -0.131 4.131 26 H 0.107 0.893 27 C -0.009 4.009 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.536 -1.118 -12.749 16.577 hybrid contribution 0.698 -0.640 0.690 1.172 sum -9.838 -1.758 -12.059 15.662 Atomic orbital electron populations 1.21734 0.95279 1.01519 1.02070 1.21157 0.96151 0.93735 1.02243 1.22462 0.91677 0.98604 1.00972 0.86522 1.23082 1.02322 1.02904 0.90355 1.22283 0.97373 0.99080 1.01740 0.85946 1.19233 0.80645 0.85538 0.80165 1.90661 1.53306 1.49291 1.49701 1.48164 1.04891 1.27260 1.53241 1.21822 0.92980 0.88293 0.97105 1.23158 0.93508 0.99455 0.98195 0.89128 1.21209 0.94058 0.88959 0.89703 1.44344 1.55022 1.34637 0.98998 1.18990 1.22450 1.06966 0.87657 0.90439 1.24798 1.00058 0.98791 0.96578 1.69942 1.42836 1.34027 1.09975 0.86200 0.79305 0.80511 0.79731 1.21143 1.21592 1.21191 1.21139 0.93672 0.96624 0.86558 1.22939 0.95207 0.96678 0.98262 0.89328 1.22102 0.86057 0.94619 0.98155 0.92495 0.92621 0.92699 0.91292 0.91690 0.87940 0.88467 0.92407 0.90938 0.93526 0.93202 0.93630 0.94549 0.96139 0.90437 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.87 37.16 0.37 -0.87 16 2 C -0.10 -0.90 6.22 -26.73 -0.17 -1.06 16 3 C -0.12 -1.37 5.25 -90.62 -0.48 -1.85 16 4 H 0.12 1.54 7.60 -51.92 -0.39 1.15 16 5 C -0.15 -1.57 9.88 -26.70 -0.26 -1.83 16 6 C -0.18 -2.42 5.03 -91.74 -0.46 -2.88 16 7 H 0.12 1.50 7.78 -51.93 -0.40 1.09 16 8 C 0.56 9.55 7.62 -10.99 -0.08 9.47 16 9 O -0.55 -11.18 16.57 5.56 0.09 -11.09 16 10 N -0.60 -10.33 3.31 -172.15 -0.57 -10.90 16 11 C 0.12 2.14 6.23 -3.57 -0.02 2.12 16 12 C -0.12 -2.22 4.01 -88.60 -0.36 -2.58 16 13 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.19 4.36 4.77 -3.31 -0.02 4.35 16 15 N -0.60 -14.80 3.39 -171.50 -0.58 -15.38 16 16 C -0.23 -6.32 10.25 -15.06 -0.15 -6.47 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -26.79 10.24 55.49 0.57 -26.22 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 C 0.15 2.83 6.41 -3.42 -0.02 2.81 16 25 C -0.11 -1.79 4.14 -88.24 -0.37 -2.15 16 26 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 27 C 0.11 1.78 5.64 -3.28 -0.02 1.76 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 36 H 0.07 1.43 7.44 -51.93 -0.39 1.05 16 37 H 0.05 1.23 7.40 -51.93 -0.38 0.85 16 38 H 0.05 1.33 6.58 -51.93 -0.34 0.99 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.04 0.67 7.97 -51.93 -0.41 0.26 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 1.39 7.76 -51.93 -0.40 0.99 16 43 H 0.07 0.84 7.81 -51.93 -0.41 0.44 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -31.40 340.86 -9.82 -41.22 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.31 Total: -0.18 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.13 Total: 0.55 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.58 Total: -52.50 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.40 -9.82 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049069790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.006 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds