Wall clock time and date at job start Tue Mar 31 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 115.55245 * 29.41643 * 3 2 1 5 5 C 1.52998 * 117.50310 * 243.74949 * 3 2 1 6 6 C 1.52996 * 117.50163 * 175.08923 * 3 2 1 7 7 H 1.09002 * 117.49721 * 359.97438 * 6 3 2 8 8 C 1.50704 * 117.50029 * 214.97809 * 6 3 2 9 9 O 1.21277 * 119.99975 * 0.02562 * 8 6 3 10 10 N 1.34772 * 119.99968 * 179.97438 * 8 6 3 11 11 C 1.46671 * 125.34153 * 180.02562 * 10 8 6 12 12 C 1.53725 * 107.94707 * 180.54819 * 11 10 8 13 13 H 1.08994 * 112.55978 * 139.72184 * 12 11 10 14 14 C 1.53694 * 109.33716 * 266.25356 * 12 11 10 15 15 N 1.47173 * 107.73075 * 128.69774 * 14 12 11 16 16 C 1.36938 * 125.25176 * 180.39493 * 15 14 12 17 17 H 1.08004 * 119.99475 * 179.13424 * 16 15 14 18 18 C 1.38812 * 120.00021 * 359.14055 * 16 15 14 19 19 N 1.31615 * 120.00022 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47108 * 59.99585 * 20 18 16 22 22 H 1.48501 * 109.46879 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47232 * 299.99439 * 20 18 16 24 24 C 1.46748 * 109.41253 * 359.64856 * 15 14 12 25 25 C 1.53934 * 106.71742 * 342.40756 * 24 15 14 26 26 H 1.09006 * 113.00727 * 150.83293 * 25 24 15 27 27 C 1.46783 * 125.34107 * 359.70028 * 10 8 6 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09000 * 117.49561 * 359.97438 * 5 3 2 34 34 H 1.09001 * 117.50251 * 144.99144 * 5 3 2 35 35 H 1.09008 * 109.77025 * 300.17315 * 11 10 8 36 36 H 1.09000 * 109.76612 * 60.92118 * 11 10 8 37 37 H 1.09001 * 109.75878 * 247.19800 * 14 12 11 38 38 H 1.08997 * 109.76456 * 7.91419 * 14 12 11 39 39 H 0.96996 * 119.99837 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.00772 * 223.09475 * 24 15 14 41 41 H 1.08995 * 110.04475 * 101.74613 * 24 15 14 42 42 H 1.09005 * 110.02523 * 280.77648 * 27 10 8 43 43 H 1.09007 * 110.02331 * 42.18466 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3890 2.1713 0.4830 5 6 2.8414 1.9085 -1.2171 6 6 3.5502 1.6579 0.1162 7 1 4.1805 0.7719 0.1930 8 6 4.0240 2.8617 0.8892 9 8 3.2177 3.6158 1.3912 10 7 5.3438 3.0996 1.0236 11 6 5.9325 4.2306 1.7484 12 6 7.4617 4.1203 1.6369 13 1 7.9403 5.0867 1.4791 14 6 8.0085 3.3707 2.8622 15 7 8.8752 2.2860 2.3741 16 6 9.5417 1.3897 3.1663 17 1 10.1461 0.6162 2.7160 18 6 9.4404 1.4753 4.5481 19 7 8.7042 2.4182 5.0968 20 14 10.3490 0.2521 5.6287 21 1 11.8079 0.3505 5.3690 22 1 10.0792 0.5573 7.0567 23 1 9.8829 -1.1234 5.3194 24 6 8.8994 2.3038 0.9070 25 6 7.6874 3.1378 0.4542 26 1 7.8489 3.6416 -0.4989 27 6 6.4175 2.2637 0.4732 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.0057 1.1873 -2.0177 34 1 2.7177 2.9438 -1.5349 35 1 5.5971 5.1679 1.3043 36 1 5.6353 4.1918 2.7963 37 1 8.6019 4.0495 3.4749 38 1 7.1815 2.9718 3.4496 39 1 8.6337 2.4782 6.0624 40 1 8.8185 1.2879 0.5203 41 1 9.8220 2.7646 0.5541 42 1 6.5717 1.3896 1.1059 43 1 6.1653 1.9516 -0.5403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049069790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:12 Heat of formation + Delta-G solvation = -8.687700 kcal Electronic energy + Delta-G solvation = -22229.794018 eV Core-core repulsion = 19082.206133 eV Total energy + Delta-G solvation = -3147.587885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62331 -40.07008 -37.93959 -36.53941 -34.11913 -32.97558 -31.88046 -31.08774 -27.73120 -27.04706 -25.70343 -24.65891 -23.60411 -21.83329 -21.43920 -20.75809 -20.11600 -18.86561 -18.18992 -17.53421 -16.64691 -16.55574 -15.92426 -15.55676 -15.44847 -15.37777 -14.73163 -14.46893 -14.32758 -13.79549 -13.61290 -13.40691 -13.30280 -13.19904 -13.04937 -12.96683 -12.72655 -12.65832 -12.19387 -12.03077 -11.92527 -11.89362 -11.85858 -11.53382 -11.38326 -11.25424 -11.02905 -10.82600 -10.66846 -9.67900 -8.87218 -7.84656 -5.19697 1.41662 1.45469 1.48377 1.54704 1.95592 2.50022 2.83599 3.26696 3.34049 3.52139 3.64563 3.74282 3.83833 3.85477 3.96571 4.17692 4.27058 4.27496 4.32118 4.48331 4.51103 4.54828 4.59320 4.72485 4.77428 4.83047 4.91891 4.92441 4.96515 5.06149 5.09941 5.15809 5.23151 5.26268 5.30894 5.40341 5.48553 5.49711 5.62624 5.76748 6.20773 6.50299 7.08073 7.10704 7.80555 8.42409 9.25337 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019678 B = 0.004370 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.601638 B = 6405.751165 C = 6994.356056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.123 4.123 4 H 0.093 0.907 5 C -0.120 4.120 6 C -0.199 4.199 7 H 0.135 0.865 8 C 0.547 3.453 9 O -0.593 6.593 10 N -0.607 5.607 11 C 0.123 3.877 12 C -0.113 4.113 13 H 0.115 0.885 14 C 0.199 3.801 15 N -0.625 5.625 16 C -0.239 4.239 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.976 3.024 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.277 1.277 24 C 0.140 3.860 25 C -0.093 4.093 26 H 0.136 0.864 27 C 0.117 3.883 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.244 0.756 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 -2.682 -16.723 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.142 4.142 4 H 0.111 0.889 5 C -0.157 4.157 6 C -0.220 4.220 7 H 0.153 0.847 8 C 0.338 3.662 9 O -0.474 6.474 10 N -0.338 5.338 11 C 0.000 4.000 12 C -0.132 4.132 13 H 0.133 0.867 14 C 0.074 3.926 15 N -0.351 5.351 16 C -0.369 4.369 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.805 3.195 21 H -0.200 1.200 22 H -0.226 1.226 23 H -0.203 1.203 24 C 0.015 3.985 25 C -0.112 4.112 26 H 0.154 0.846 27 C -0.005 4.005 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.155 0.845 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.344 -2.352 -16.263 19.417 hybrid contribution 0.643 -0.253 1.768 1.899 sum -9.700 -2.605 -14.494 17.634 Atomic orbital electron populations 1.21733 0.94601 1.02313 1.01895 1.21169 0.96732 0.92166 1.02826 1.22510 0.90313 0.99539 1.01807 0.88926 1.23225 0.99128 1.03623 0.89774 1.22277 0.98459 0.97582 1.03679 0.84721 1.20032 0.80181 0.86203 0.79792 1.90634 1.54251 1.51066 1.51481 1.48296 1.05440 1.27136 1.52970 1.21683 0.92904 0.89755 0.95621 1.22998 0.93316 1.00378 0.96528 0.86744 1.20832 0.91923 0.88360 0.91511 1.44648 1.54678 1.34261 1.01519 1.19445 1.21899 1.07206 0.88302 0.89496 1.25640 1.01480 1.00783 0.98139 1.70199 1.44721 1.35989 1.09329 0.85181 0.78503 0.78590 0.77258 1.20049 1.22597 1.20258 1.21381 0.95576 0.98171 0.83395 1.23004 0.93791 0.95402 0.99019 0.84648 1.22138 0.85485 0.93233 0.99671 0.93683 0.91860 0.91394 0.92205 0.89551 0.84528 0.88809 0.90537 0.94474 0.97633 0.97721 0.94709 0.93271 0.94948 0.93307 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.87 71.98 0.71 -1.49 16 2 C -0.09 -1.53 6.22 30.59 0.19 -1.34 16 3 C -0.12 -2.67 5.25 -10.80 -0.06 -2.73 16 4 H 0.09 2.48 7.60 -2.38 -0.02 2.46 16 5 C -0.12 -2.12 9.88 30.62 0.30 -1.82 16 6 C -0.20 -4.86 5.03 -11.52 -0.06 -4.92 16 7 H 0.14 2.95 7.78 -2.39 -0.02 2.93 16 8 C 0.55 18.62 7.62 87.66 0.67 19.29 16 9 O -0.59 -24.65 16.57 -3.02 -0.05 -24.70 16 10 N -0.61 -20.27 3.31 -816.94 -2.71 -22.98 16 11 C 0.12 4.41 6.23 86.59 0.54 4.95 16 12 C -0.11 -3.96 4.01 -9.49 -0.04 -4.00 16 13 H 0.11 3.51 8.14 -2.39 -0.02 3.50 16 14 C 0.20 9.75 4.77 86.48 0.41 10.16 16 15 N -0.62 -30.86 3.39 -696.50 -2.36 -33.22 16 16 C -0.24 -13.13 10.25 84.03 0.86 -12.27 16 17 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.86 5.48 84.86 0.47 -3.39 16 19 N -0.95 -58.31 10.24 21.65 0.22 -58.08 16 20 Si 0.98 45.86 29.55 68.60 2.03 47.88 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C 0.14 5.07 6.41 86.65 0.56 5.62 16 25 C -0.09 -2.69 4.14 -9.25 -0.04 -2.72 16 26 H 0.14 2.82 8.14 -2.38 -0.02 2.80 16 27 C 0.12 3.36 5.64 86.72 0.49 3.85 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.09 7.88 -2.39 -0.02 1.07 16 33 H 0.14 1.52 8.03 -2.39 -0.02 1.50 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.04 1.57 7.44 -2.39 -0.02 1.55 16 37 H 0.01 0.30 7.40 -2.39 -0.02 0.29 16 38 H 0.00 0.27 6.58 -2.39 -0.02 0.25 16 39 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.05 1.68 7.97 -2.39 -0.02 1.66 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.70 7.76 -2.38 -0.02 1.68 16 43 H 0.11 2.25 7.81 -2.38 -0.02 2.23 16 Total: -1.00 -73.02 340.86 3.11 -69.91 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.97 Total: 12.00 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.00 Total: 9.19 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.84 Total: -114.29 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.02 3.11 -69.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049069790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.222 kcal (2) G-P(sol) polarization free energy of solvation -73.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds