Wall clock time and date at job start Tue Mar 31 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50702 * 120.00512 * 2 1 4 4 C 1.33002 * 119.99862 * 179.97438 * 2 1 3 5 5 C 1.47100 * 119.99977 * 352.11356 * 4 2 1 6 6 O 1.21617 * 120.00029 * 354.03948 * 5 4 2 7 7 N 1.34773 * 119.99924 * 174.03729 * 5 4 2 8 8 C 1.48176 * 122.12850 * 5.69379 * 7 5 4 9 9 C 1.52713 * 111.82566 * 127.87618 * 8 7 5 10 10 C 1.53868 * 111.52786 * 47.74878 * 9 8 7 11 11 C 1.51089 * 107.33935 * 303.07121 * 10 9 8 12 12 H 1.09006 * 108.30425 * 308.75622 * 11 10 9 13 13 C 1.45722 * 122.22830 * 184.16159 * 7 5 4 14 14 H 1.08997 * 111.06982 * 118.58809 * 13 7 5 15 15 C 1.53434 * 116.37590 * 350.08603 * 13 7 5 16 16 C 1.55472 * 101.67412 * 206.44865 * 15 13 7 17 17 N 1.45024 * 119.18766 * 183.88518 * 11 10 9 18 18 C 1.36929 * 126.56793 * 28.78756 * 17 11 10 19 19 H 1.08012 * 119.99572 * 3.34738 * 18 17 11 20 20 C 1.38810 * 120.00830 * 183.34682 * 18 17 11 21 21 N 1.31617 * 120.00295 * 210.22576 * 20 18 17 22 22 Si 1.86805 * 119.99574 * 30.22750 * 20 18 17 23 23 H 1.48494 * 109.47076 * 275.69194 * 22 20 18 24 24 H 1.48497 * 109.47026 * 155.69094 * 22 20 18 25 25 H 1.48499 * 109.47131 * 35.69007 * 22 20 18 26 26 H 1.09005 * 109.46865 * 263.41692 * 1 2 3 27 27 H 1.09000 * 109.46979 * 23.40763 * 1 2 3 28 28 H 1.08991 * 109.47322 * 143.41265 * 1 2 3 29 29 H 1.09004 * 109.46966 * 270.00353 * 3 2 1 30 30 H 1.09003 * 109.46661 * 29.99415 * 3 2 1 31 31 H 1.08994 * 109.47412 * 149.99869 * 3 2 1 32 32 H 1.07997 * 119.99815 * 172.11027 * 4 2 1 33 33 H 1.08997 * 109.39667 * 6.82180 * 8 7 5 34 34 H 1.08995 * 108.14203 * 248.09615 * 8 7 5 35 35 H 1.08997 * 109.07537 * 287.21690 * 9 8 7 36 36 H 1.09005 * 109.06812 * 168.26874 * 9 8 7 37 37 H 1.09000 * 109.88902 * 183.61413 * 10 9 8 38 38 H 1.08997 * 109.88688 * 62.52497 * 10 9 8 39 39 H 1.09006 * 110.98211 * 88.35044 * 15 13 7 40 40 H 1.08996 * 110.98879 * 324.55043 * 15 13 7 41 41 H 1.08998 * 109.95757 * 263.22688 * 16 15 13 42 42 H 1.08997 * 109.96017 * 141.98082 * 16 15 13 43 43 H 0.97000 * 120.00273 * 5.09395 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4468 -2.4196 0.1759 6 8 0.2572 -2.4099 0.4283 7 7 2.1008 -3.5920 0.0567 8 6 3.5696 -3.6599 -0.1268 9 6 4.2264 -4.5913 0.8897 10 6 3.4863 -5.9371 0.9830 11 6 2.0482 -5.6366 1.3358 12 1 2.0391 -4.9809 2.2065 13 6 1.4151 -4.8756 0.1325 14 1 1.5243 -5.4337 -0.7973 15 6 -0.0496 -4.8401 0.5880 16 6 -0.2218 -6.2569 1.2046 17 7 1.1333 -6.7367 1.5725 18 6 1.4570 -7.9786 2.0499 19 1 2.4740 -8.1971 2.3409 20 6 0.4784 -8.9569 2.1598 21 7 0.5690 -9.8761 3.0974 22 14 -0.9673 -8.9687 0.9768 23 1 -2.0181 -8.0426 1.4700 24 1 -1.5217 -10.3433 0.8864 25 1 -0.5113 -8.5295 -0.3665 26 1 -0.3633 -0.1178 1.0210 27 1 -0.3633 0.9431 -0.4083 28 1 -0.3633 -0.8251 -0.6125 29 1 2.4422 1.6197 -1.0277 30 1 1.6715 2.0647 0.5138 31 1 3.2129 1.1747 0.5138 32 1 3.2442 -1.1563 -0.1279 33 1 3.9939 -2.6613 -0.0233 34 1 3.7693 -4.0300 -1.1324 35 1 4.2189 -4.1122 1.8687 36 1 5.2589 -4.7728 0.5913 37 1 3.9370 -6.5551 1.7595 38 1 3.5326 -6.4530 0.0240 39 1 -0.7190 -4.6997 -0.2608 40 1 -0.2063 -4.0658 1.3389 41 1 -0.6686 -6.9295 0.4725 42 1 -0.8511 -6.2021 2.0929 43 1 1.2784 -9.8276 3.7572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049292684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:20 Heat of formation + Delta-G solvation = 23.284011 kcal Electronic energy + Delta-G solvation = -22932.133745 eV Core-core repulsion = 19785.932257 eV Total energy + Delta-G solvation = -3146.201488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44190 -38.25435 -35.64585 -35.40031 -32.73994 -32.31681 -29.67981 -28.63244 -27.99290 -27.67042 -24.69101 -23.87021 -21.87647 -21.47731 -20.12612 -19.31895 -17.90674 -17.31793 -16.46489 -15.72165 -15.34245 -15.05382 -14.42571 -14.24863 -14.20124 -14.03135 -13.77897 -13.48471 -13.03504 -12.87998 -12.54392 -12.42209 -12.33422 -12.08435 -11.90846 -11.72866 -11.68707 -11.15787 -10.99626 -10.73467 -10.57365 -10.49865 -10.17703 -10.04981 -9.57028 -9.24618 -9.17241 -8.83206 -8.35519 -8.23641 -7.04259 -6.32119 -3.09761 1.33883 3.15383 3.40630 3.51690 3.57443 3.75687 4.47618 4.64094 4.68978 4.71824 4.96003 5.06328 5.13823 5.19095 5.23748 5.30298 5.35263 5.40757 5.53285 5.55966 5.58983 5.65486 5.69755 5.79423 5.83798 5.91974 6.02647 6.03503 6.12261 6.27282 6.33418 6.39758 6.45310 6.56664 6.63312 6.70434 6.72437 6.99203 7.08100 7.70296 7.74385 8.36562 8.43820 9.05284 9.66475 10.33026 11.17301 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.005168 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.372973 B = 5416.831348 C = 6154.588445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 C -0.126 4.126 4 C -0.235 4.235 5 C 0.548 3.452 6 O -0.535 6.535 7 N -0.598 5.598 8 C 0.112 3.888 9 C -0.130 4.130 10 C -0.114 4.114 11 C 0.160 3.840 12 H 0.024 0.976 13 C 0.113 3.887 14 H 0.080 0.920 15 C -0.115 4.115 16 C 0.111 3.889 17 N -0.598 5.598 18 C -0.329 4.329 19 H 0.081 0.919 20 C -0.013 4.013 21 N -0.912 5.912 22 Si 1.051 2.949 23 H -0.293 1.293 24 H -0.300 1.300 25 H -0.294 1.294 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.592 20.377 -8.367 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.040 4.040 3 C -0.182 4.182 4 C -0.255 4.255 5 C 0.340 3.660 6 O -0.416 6.416 7 N -0.331 5.331 8 C -0.011 4.011 9 C -0.168 4.168 10 C -0.153 4.153 11 C 0.051 3.949 12 H 0.041 0.959 13 C 0.009 3.991 14 H 0.098 0.902 15 C -0.153 4.153 16 C -0.014 4.014 17 N -0.324 5.324 18 C -0.456 4.456 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.552 5.552 22 Si 0.884 3.116 23 H -0.221 1.221 24 H -0.228 1.228 25 H -0.222 1.222 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.647 19.414 -8.621 21.745 hybrid contribution 1.648 0.735 0.302 1.830 sum 6.295 20.149 -8.320 22.690 Atomic orbital electron populations 1.21113 0.90870 1.02040 1.03778 1.22538 0.96929 0.94308 0.90240 1.20988 1.00046 0.94524 1.02652 1.22517 1.00237 0.92326 1.10463 1.18447 0.86776 0.83651 0.77153 1.90736 1.15346 1.86901 1.48575 1.47953 1.07672 1.05623 1.71819 1.21785 0.79590 1.00416 0.99284 1.21901 0.99151 0.96338 0.99451 1.21409 0.96160 0.95588 1.02142 1.20852 0.90225 0.90072 0.93754 0.95903 1.22459 0.94765 0.82608 0.99311 0.90191 1.22710 0.93843 0.97282 1.01460 1.22268 0.88714 0.92924 0.97489 1.44487 1.00851 1.10450 1.76645 1.19969 0.97362 0.87998 1.40228 0.90152 1.25618 1.00750 0.94418 1.00588 1.70897 1.32364 1.39228 1.12675 0.84025 0.76556 0.74298 0.76692 1.22065 1.22781 1.22229 0.90252 0.92998 0.89331 0.90650 0.90960 0.91231 0.85766 0.90042 0.91755 0.91794 0.90755 0.91363 0.91781 0.91549 0.88598 0.95027 0.93897 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.43 36.00 0.30 -1.06 16 2 C -0.04 -0.39 6.11 -101.17 -0.62 -1.01 16 3 C -0.13 -0.86 10.01 36.01 0.36 -0.50 16 4 C -0.23 -2.71 8.98 -37.80 -0.34 -3.05 16 5 C 0.55 8.41 7.50 -12.67 -0.10 8.31 16 6 O -0.54 -9.53 10.07 5.26 0.05 -9.48 16 7 N -0.60 -9.18 2.97 -164.91 -0.49 -9.67 16 8 C 0.11 1.31 6.27 -3.27 -0.02 1.29 16 9 C -0.13 -1.65 5.93 -26.43 -0.16 -1.80 16 10 C -0.11 -2.00 5.46 -27.24 -0.15 -2.15 16 11 C 0.16 3.34 2.60 -68.18 -0.18 3.16 16 12 H 0.02 0.52 8.04 -51.93 -0.42 0.11 16 13 C 0.11 2.11 3.32 -66.62 -0.22 1.88 16 14 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 15 C -0.11 -2.30 5.04 -25.19 -0.13 -2.43 16 16 C 0.11 2.62 5.04 -1.69 -0.01 2.61 16 17 N -0.60 -15.16 3.28 -163.07 -0.53 -15.70 16 18 C -0.33 -9.47 10.06 -15.06 -0.15 -9.62 16 19 H 0.08 2.40 7.57 -52.48 -0.40 2.00 16 20 C -0.01 -0.38 5.44 -17.43 -0.09 -0.47 16 21 N -0.91 -28.80 13.70 55.49 0.76 -28.04 16 22 Si 1.05 27.42 24.73 -169.99 -4.20 23.21 16 23 H -0.29 -7.32 6.70 56.52 0.38 -6.94 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.29 -7.36 6.75 56.52 0.38 -6.98 16 26 H 0.08 0.97 7.98 -51.93 -0.41 0.56 16 27 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.09 1.19 6.27 -51.93 -0.33 0.86 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.12 1.12 6.04 -52.49 -0.32 0.81 16 33 H 0.08 0.73 5.60 -51.93 -0.29 0.44 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.29 7.71 -51.93 -0.40 0.89 16 38 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 2.00 6.13 -51.93 -0.32 1.68 16 41 H 0.03 0.78 3.69 -51.93 -0.19 0.59 16 42 H 0.04 1.06 7.88 -51.93 -0.41 0.65 16 43 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -33.00 322.39 -7.95 -40.94 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.90 Total: -1.29 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.50 Total: -4.84 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.26 Total: -53.41 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.05 Total: -9.48 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -4.20 Total: 23.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.00 -7.95 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049292684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.227 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds