Wall clock time and date at job start Tue Mar 31 2020 00:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50702 * 120.00512 * 2 1 4 4 C 1.33002 * 119.99862 * 179.97438 * 2 1 3 5 5 C 1.47100 * 119.99977 * 352.11356 * 4 2 1 6 6 O 1.21617 * 120.00029 * 354.03948 * 5 4 2 7 7 N 1.34773 * 119.99924 * 174.03729 * 5 4 2 8 8 C 1.48176 * 122.12850 * 5.69379 * 7 5 4 9 9 C 1.52713 * 111.82566 * 127.87618 * 8 7 5 10 10 C 1.53868 * 111.52786 * 47.74878 * 9 8 7 11 11 C 1.51089 * 107.33935 * 303.07121 * 10 9 8 12 12 H 1.09006 * 108.30425 * 308.75622 * 11 10 9 13 13 C 1.45722 * 122.22830 * 184.16159 * 7 5 4 14 14 H 1.08997 * 111.06982 * 118.58809 * 13 7 5 15 15 C 1.53434 * 116.37590 * 350.08603 * 13 7 5 16 16 C 1.55472 * 101.67412 * 206.44865 * 15 13 7 17 17 N 1.45024 * 119.18766 * 183.88518 * 11 10 9 18 18 C 1.36929 * 126.56793 * 28.78756 * 17 11 10 19 19 H 1.08012 * 119.99572 * 3.34738 * 18 17 11 20 20 C 1.38810 * 120.00830 * 183.34682 * 18 17 11 21 21 N 1.31617 * 120.00295 * 210.22576 * 20 18 17 22 22 Si 1.86805 * 119.99574 * 30.22750 * 20 18 17 23 23 H 1.48494 * 109.47076 * 275.69194 * 22 20 18 24 24 H 1.48497 * 109.47026 * 155.69094 * 22 20 18 25 25 H 1.48499 * 109.47131 * 35.69007 * 22 20 18 26 26 H 1.09005 * 109.46865 * 263.41692 * 1 2 3 27 27 H 1.09000 * 109.46979 * 23.40763 * 1 2 3 28 28 H 1.08991 * 109.47322 * 143.41265 * 1 2 3 29 29 H 1.09004 * 109.46966 * 270.00353 * 3 2 1 30 30 H 1.09003 * 109.46661 * 29.99415 * 3 2 1 31 31 H 1.08994 * 109.47412 * 149.99869 * 3 2 1 32 32 H 1.07997 * 119.99815 * 172.11027 * 4 2 1 33 33 H 1.08997 * 109.39667 * 6.82180 * 8 7 5 34 34 H 1.08995 * 108.14203 * 248.09615 * 8 7 5 35 35 H 1.08997 * 109.07537 * 287.21690 * 9 8 7 36 36 H 1.09005 * 109.06812 * 168.26874 * 9 8 7 37 37 H 1.09000 * 109.88902 * 183.61413 * 10 9 8 38 38 H 1.08997 * 109.88688 * 62.52497 * 10 9 8 39 39 H 1.09006 * 110.98211 * 88.35044 * 15 13 7 40 40 H 1.08996 * 110.98879 * 324.55043 * 15 13 7 41 41 H 1.08998 * 109.95757 * 263.22688 * 16 15 13 42 42 H 1.08997 * 109.96017 * 141.98082 * 16 15 13 43 43 H 0.97000 * 120.00273 * 5.09395 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4468 -2.4196 0.1759 6 8 0.2572 -2.4099 0.4283 7 7 2.1008 -3.5920 0.0567 8 6 3.5696 -3.6599 -0.1268 9 6 4.2264 -4.5913 0.8897 10 6 3.4863 -5.9371 0.9830 11 6 2.0482 -5.6366 1.3358 12 1 2.0391 -4.9809 2.2065 13 6 1.4151 -4.8756 0.1325 14 1 1.5243 -5.4337 -0.7973 15 6 -0.0496 -4.8401 0.5880 16 6 -0.2218 -6.2569 1.2046 17 7 1.1333 -6.7367 1.5725 18 6 1.4570 -7.9786 2.0499 19 1 2.4740 -8.1971 2.3409 20 6 0.4784 -8.9569 2.1598 21 7 0.5690 -9.8761 3.0974 22 14 -0.9673 -8.9687 0.9768 23 1 -2.0181 -8.0426 1.4700 24 1 -1.5217 -10.3433 0.8864 25 1 -0.5113 -8.5295 -0.3665 26 1 -0.3633 -0.1178 1.0210 27 1 -0.3633 0.9431 -0.4083 28 1 -0.3633 -0.8251 -0.6125 29 1 2.4422 1.6197 -1.0277 30 1 1.6715 2.0647 0.5138 31 1 3.2129 1.1747 0.5138 32 1 3.2442 -1.1563 -0.1279 33 1 3.9939 -2.6613 -0.0233 34 1 3.7693 -4.0300 -1.1324 35 1 4.2189 -4.1122 1.8687 36 1 5.2589 -4.7728 0.5913 37 1 3.9370 -6.5551 1.7595 38 1 3.5326 -6.4530 0.0240 39 1 -0.7190 -4.6997 -0.2608 40 1 -0.2063 -4.0658 1.3389 41 1 -0.6686 -6.9295 0.4725 42 1 -0.8511 -6.2021 2.0929 43 1 1.2784 -9.8276 3.7572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049292684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:19 Heat of formation + Delta-G solvation = 1.674094 kcal Electronic energy + Delta-G solvation = -22933.070821 eV Core-core repulsion = 19785.932257 eV Total energy + Delta-G solvation = -3147.138564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75055 -39.63003 -37.10810 -36.29315 -34.57564 -33.92190 -31.44334 -30.08745 -28.81896 -28.58143 -26.08017 -25.73243 -23.39984 -22.79466 -21.66099 -20.77216 -19.36766 -18.82032 -17.66870 -17.08089 -17.01727 -16.55539 -15.87092 -15.57960 -15.45373 -15.38172 -14.87060 -14.80101 -14.42619 -14.15252 -14.02019 -13.67205 -13.49988 -13.22900 -13.11957 -13.02842 -12.77930 -12.58690 -12.46467 -12.35289 -12.00173 -11.92549 -11.72560 -11.65425 -11.50220 -11.17546 -10.62295 -10.21491 -9.98665 -9.49160 -9.15763 -8.68709 -5.39042 0.45944 1.39220 1.46672 1.66973 2.00225 2.34206 2.52141 2.93156 3.18832 3.50301 3.76551 3.84775 3.91600 3.96759 4.02098 4.12784 4.17123 4.29524 4.32651 4.38199 4.59337 4.62273 4.65987 4.72289 4.73596 4.79672 4.86840 4.92240 4.95737 4.97093 5.06574 5.12757 5.19483 5.19835 5.26792 5.39364 5.48499 5.59229 5.64903 5.75944 6.07318 6.58314 6.76597 7.29086 7.48101 8.14457 8.82310 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.005168 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.372973 B = 5416.831348 C = 6154.588445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.027 4.027 3 C -0.122 4.122 4 C -0.248 4.248 5 C 0.537 3.463 6 O -0.571 6.571 7 N -0.602 5.602 8 C 0.108 3.892 9 C -0.119 4.119 10 C -0.112 4.112 11 C 0.151 3.849 12 H 0.004 0.996 13 C 0.129 3.871 14 H 0.083 0.917 15 C -0.101 4.101 16 C 0.104 3.896 17 N -0.618 5.618 18 C -0.315 4.315 19 H 0.058 0.942 20 C -0.068 4.068 21 N -0.947 5.947 22 Si 1.092 2.908 23 H -0.280 1.280 24 H -0.302 1.302 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.024 0.976 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 23.759 -10.629 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.179 4.179 4 C -0.268 4.268 5 C 0.331 3.669 6 O -0.453 6.453 7 N -0.334 5.334 8 C -0.013 4.013 9 C -0.158 4.158 10 C -0.151 4.151 11 C 0.043 3.957 12 H 0.021 0.979 13 C 0.023 3.977 14 H 0.101 0.899 15 C -0.139 4.139 16 C -0.020 4.020 17 N -0.344 5.344 18 C -0.443 4.443 19 H 0.076 0.924 20 C -0.263 4.263 21 N -0.589 5.589 22 Si 0.920 3.080 23 H -0.207 1.207 24 H -0.230 1.230 25 H -0.203 1.203 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.154 22.853 -10.905 26.058 hybrid contribution 1.223 -0.213 1.076 1.643 sum 7.377 22.639 -9.829 25.760 Atomic orbital electron populations 1.21069 0.92173 1.02310 1.02435 1.22883 0.96376 0.95769 0.87824 1.21058 1.00231 0.92449 1.04117 1.22526 1.01492 0.90361 1.12433 1.19195 0.86703 0.84719 0.76269 1.90721 1.17064 1.87424 1.50109 1.48065 1.09181 1.04254 1.71914 1.22095 0.77137 1.02342 0.99712 1.21877 1.00428 0.93378 1.00092 1.21401 0.94223 0.98418 1.01045 1.21025 0.91958 0.88505 0.94231 0.97875 1.22063 0.93396 0.84378 0.97858 0.89948 1.22564 0.95599 0.94356 1.01380 1.22359 0.87690 0.95100 0.96890 1.44552 1.02881 1.10093 1.76922 1.19879 0.96190 0.89462 1.38758 0.92443 1.26701 1.03506 0.94641 1.01458 1.70991 1.33001 1.40981 1.13970 0.83468 0.74434 0.74377 0.75691 1.20691 1.23047 1.20277 0.91838 0.90540 0.91872 0.88787 0.90051 0.89838 0.82591 0.86234 0.89862 0.92134 0.87162 0.93842 0.91786 0.90189 0.89558 0.95109 0.95776 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.43 71.23 0.60 -1.96 16 2 C -0.03 -0.46 6.11 -17.62 -0.11 -0.57 16 3 C -0.12 -1.11 10.01 71.24 0.71 -0.39 16 4 C -0.25 -4.82 8.98 23.43 0.21 -4.61 16 5 C 0.54 15.41 7.50 86.57 0.65 16.06 16 6 O -0.57 -20.03 10.07 -4.09 -0.04 -20.07 16 7 N -0.60 -17.05 2.97 -793.92 -2.35 -19.40 16 8 C 0.11 2.08 6.27 85.96 0.54 2.61 16 9 C -0.12 -2.67 5.93 30.79 0.18 -2.48 16 10 C -0.11 -3.86 5.46 30.26 0.17 -3.69 16 11 C 0.15 6.32 2.60 45.62 0.12 6.44 16 12 H 0.00 0.17 8.04 -2.38 -0.02 0.15 16 13 C 0.13 4.65 3.32 46.26 0.15 4.80 16 14 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 15 C -0.10 -4.03 5.04 31.59 0.16 -3.87 16 16 C 0.10 4.97 5.04 86.87 0.44 5.41 16 17 N -0.62 -31.99 3.28 -669.82 -2.20 -34.18 16 18 C -0.32 -18.75 10.06 84.03 0.85 -17.91 16 19 H 0.06 3.61 7.57 -2.90 -0.02 3.58 16 20 C -0.07 -4.17 5.44 84.86 0.46 -3.71 16 21 N -0.95 -62.03 13.70 21.65 0.30 -61.73 16 22 Si 1.09 56.38 24.73 68.60 1.70 58.08 16 23 H -0.28 -13.74 6.70 99.48 0.67 -13.08 16 24 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 25 H -0.28 -13.29 6.75 99.48 0.67 -12.62 16 26 H 0.06 1.52 7.98 -2.38 -0.02 1.50 16 27 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.06 1.66 6.27 -2.39 -0.01 1.64 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.08 0.59 8.07 -2.39 -0.02 0.57 16 32 H 0.16 1.95 6.04 -2.91 -0.02 1.93 16 33 H 0.12 1.45 5.60 -2.39 -0.01 1.44 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.04 1.67 7.71 -2.39 -0.02 1.66 16 38 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 39 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.09 3.64 6.13 -2.39 -0.01 3.62 16 41 H 0.03 1.50 3.69 -2.39 -0.01 1.49 16 42 H 0.02 1.22 7.88 -2.39 -0.02 1.21 16 43 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 Total: -1.00 -75.94 322.39 3.40 -72.54 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.87 Total: 8.64 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.13 Total: -3.87 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -4.25 Total: -115.32 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 14 Polarization: 56.38 SS G_CDS: 1.70 Total: 58.08 kcal Total: -75.94 3.40 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049292684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.212 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds