Wall clock time and date at job start Tue Mar 31 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50694 * 120.00524 * 2 1 4 4 C 1.33000 * 119.99456 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00058 * 359.97438 * 4 2 1 6 6 O 1.21617 * 120.00093 * 5.03310 * 5 4 2 7 7 N 1.34778 * 119.99816 * 185.03647 * 5 4 2 8 8 C 1.46800 * 119.57546 * 174.65397 * 7 5 4 9 9 C 1.53469 * 107.59357 * 127.93837 * 8 7 5 10 10 C 1.52737 * 108.43744 * 58.08231 * 9 8 7 11 11 C 1.53040 * 110.82031 * 296.25494 * 10 9 8 12 12 H 1.09004 * 111.38301 * 291.21138 * 11 10 9 13 13 C 1.45118 * 119.57918 * 354.67339 * 7 5 4 14 14 H 1.09000 * 109.97062 * 348.06780 * 13 7 5 15 15 C 1.54421 * 111.60088 * 111.35161 * 13 7 5 16 16 C 1.54568 * 102.44873 * 156.57737 * 15 13 7 17 17 N 1.47121 * 107.25394 * 338.32943 * 16 15 13 18 18 C 1.36932 * 125.76816 * 177.42412 * 17 16 15 19 19 H 1.07997 * 120.00177 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00122 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00401 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47257 * 119.99716 * 22 20 18 25 25 H 1.48498 * 109.47567 * 240.00285 * 22 20 18 26 26 H 1.08996 * 109.47641 * 240.00458 * 1 2 3 27 27 H 1.09007 * 109.46960 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47314 * 119.99466 * 1 2 3 29 29 H 1.08995 * 109.47533 * 269.99697 * 3 2 1 30 30 H 1.08995 * 109.47330 * 30.00087 * 3 2 1 31 31 H 1.09000 * 109.47337 * 149.99767 * 3 2 1 32 32 H 1.08000 * 120.00123 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.84052 * 247.45887 * 8 7 5 34 34 H 1.08997 * 109.83562 * 8.41626 * 8 7 5 35 35 H 1.08999 * 109.64720 * 177.77007 * 9 8 7 36 36 H 1.09007 * 109.64097 * 298.19022 * 9 8 7 37 37 H 1.08998 * 109.20989 * 56.57519 * 10 9 8 38 38 H 1.09001 * 109.21112 * 175.93623 * 10 9 8 39 39 H 1.08996 * 110.81305 * 274.81256 * 15 13 7 40 40 H 1.09004 * 110.81304 * 38.33853 * 15 13 7 41 41 H 1.09000 * 109.88429 * 218.92196 * 16 15 13 42 42 H 1.08991 * 109.88755 * 97.74849 * 16 15 13 43 43 H 0.96994 * 120.00027 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1718 -1.1519 -0.0005 5 6 1.4362 -2.4257 -0.0005 6 8 0.2235 -2.4276 -0.0924 7 7 2.1062 -3.5907 0.1014 8 6 1.3586 -4.8486 0.2192 9 6 1.8903 -5.8067 -0.8553 10 6 3.3899 -5.9954 -0.6348 11 6 4.1388 -4.6751 -0.8297 12 1 4.1260 -4.3613 -1.8736 13 6 3.5574 -3.5856 0.0938 14 1 3.9246 -2.6051 -0.2093 15 6 4.1345 -3.9839 1.4696 16 6 5.5448 -4.4993 1.1028 17 7 5.5158 -4.8751 -0.3194 18 6 6.5809 -5.3327 -1.0482 19 1 6.4541 -5.5828 -2.0911 20 6 7.8237 -5.4751 -0.4465 21 7 7.9783 -5.1707 0.8247 22 14 9.2766 -6.1000 -1.4405 23 1 8.8431 -6.3696 -2.8349 24 1 10.3504 -5.0742 -1.4461 25 1 9.7916 -7.3523 -0.8309 26 1 -0.3634 -0.5137 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 2.4423 1.6196 -1.0276 30 1 1.6716 2.0647 0.5138 31 1 3.2129 1.1746 0.5139 32 1 3.2518 -1.1520 -0.0001 33 1 1.5134 -5.2797 1.2083 34 1 0.2966 -4.6642 0.0574 35 1 1.3838 -6.7682 -0.7721 36 1 1.7126 -5.3833 -1.8440 37 1 3.5605 -6.3578 0.3789 38 1 3.7673 -6.7298 -1.3464 39 1 4.1980 -3.1178 2.1283 40 1 3.5392 -4.7754 1.9249 41 1 5.7914 -5.3695 1.7112 42 1 6.2808 -3.7116 1.2632 43 1 8.8466 -5.2706 1.2452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049292685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:24 Heat of formation + Delta-G solvation = 8.171734 kcal Electronic energy + Delta-G solvation = -22840.884706 eV Core-core repulsion = 19694.027901 eV Total energy + Delta-G solvation = -3146.856805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.34438 -38.29270 -35.63002 -34.70640 -32.79080 -32.06358 -29.13574 -28.56527 -27.79641 -27.50404 -24.58533 -24.22905 -22.09468 -20.86610 -20.01322 -18.99928 -17.49786 -17.26294 -16.74995 -15.41639 -14.95351 -14.79207 -14.49100 -14.14089 -13.97397 -13.75398 -13.57676 -13.24663 -12.88552 -12.69830 -12.32774 -12.29164 -12.13354 -11.86781 -11.72529 -11.48887 -11.28385 -10.98566 -10.93181 -10.80045 -10.62568 -10.43576 -10.08435 -9.99461 -9.74899 -9.65201 -9.22738 -9.10001 -8.65748 -8.14665 -6.89692 -5.75039 -3.09157 1.47714 3.31535 3.37607 3.43664 3.45581 3.47615 4.44475 4.67153 4.84281 5.02541 5.22733 5.25315 5.31891 5.38836 5.42803 5.47163 5.51833 5.57893 5.62468 5.66785 5.75417 5.82385 5.87895 5.88657 6.12253 6.14068 6.17191 6.22998 6.30896 6.34464 6.46732 6.52417 6.56283 6.58122 6.79228 6.96660 7.03972 7.52257 7.55918 7.73969 7.80047 8.19567 8.46241 9.17011 9.76519 10.42186 11.36256 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021985 B = 0.005015 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.262228 B = 5582.091156 C = 6320.620658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.042 4.042 3 C -0.126 4.126 4 C -0.232 4.232 5 C 0.545 3.455 6 O -0.556 6.556 7 N -0.590 5.590 8 C 0.113 3.887 9 C -0.132 4.132 10 C -0.129 4.129 11 C 0.155 3.845 12 H 0.060 0.940 13 C 0.124 3.876 14 H 0.096 0.904 15 C -0.154 4.154 16 C 0.180 3.820 17 N -0.598 5.598 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 7.473 -0.191 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.044 4.044 3 C -0.182 4.182 4 C -0.252 4.252 5 C 0.337 3.663 6 O -0.437 6.437 7 N -0.320 5.320 8 C -0.009 4.009 9 C -0.171 4.171 10 C -0.169 4.169 11 C 0.047 3.953 12 H 0.078 0.922 13 C 0.019 3.981 14 H 0.114 0.886 15 C -0.194 4.194 16 C 0.055 3.945 17 N -0.323 5.323 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.409 7.392 -0.196 14.445 hybrid contribution 1.134 -0.533 -0.386 1.311 sum -11.275 6.858 -0.582 13.210 Atomic orbital electron populations 1.21005 0.91014 1.00620 1.04249 1.22531 0.96720 0.94469 0.90721 1.21001 1.00169 0.94245 1.02811 1.22617 1.00571 0.92000 1.10028 1.18570 0.87000 0.84449 0.76248 1.90708 1.14038 1.87520 1.51449 1.47512 1.06788 1.06203 1.71513 1.21632 0.96800 0.83658 0.98828 1.21915 0.97671 0.98705 0.98778 1.22111 0.92618 0.99951 1.02269 1.21355 0.86275 0.91902 0.95788 0.92206 1.21969 0.77799 1.00806 0.97523 0.88619 1.23157 0.99881 1.00461 0.95855 1.21183 0.89693 0.98713 0.84910 1.44712 1.03593 1.76936 1.07031 1.19085 0.86692 1.36333 0.93318 0.90376 1.24782 0.97580 1.01694 0.96226 1.69962 1.22888 1.54079 1.09968 0.86062 0.82707 0.78094 0.79004 1.20520 1.21771 1.21785 0.90372 0.93308 0.89885 0.90450 0.91221 0.91015 0.85154 0.91789 0.89329 0.91527 0.91973 0.91899 0.92221 0.91990 0.92030 0.94053 0.93007 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 8.33 36.00 0.30 -1.04 16 2 C -0.04 -0.51 6.11 -101.17 -0.62 -1.13 16 3 C -0.13 -1.13 9.98 36.00 0.36 -0.77 16 4 C -0.23 -3.24 8.86 -37.81 -0.33 -3.57 16 5 C 0.55 8.82 7.56 -12.67 -0.10 8.72 16 6 O -0.56 -9.79 12.43 5.26 0.07 -9.73 16 7 N -0.59 -9.45 2.73 -166.40 -0.45 -9.90 16 8 C 0.11 1.68 6.17 -3.64 -0.02 1.65 16 9 C -0.13 -1.92 6.11 -26.62 -0.16 -2.09 16 10 C -0.13 -2.30 5.10 -26.85 -0.14 -2.44 16 11 C 0.16 3.05 3.60 -66.34 -0.24 2.81 16 12 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 13 C 0.12 2.14 2.95 -67.29 -0.20 1.95 16 14 H 0.10 1.63 5.36 -51.93 -0.28 1.35 16 15 C -0.15 -2.80 6.08 -25.16 -0.15 -2.95 16 16 C 0.18 4.16 5.19 -2.88 -0.01 4.14 16 17 N -0.60 -14.37 2.91 -162.18 -0.47 -14.84 16 18 C -0.23 -6.04 10.29 -15.06 -0.16 -6.19 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.26 10.33 55.49 0.57 -25.69 16 22 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.08 1.03 7.36 -51.93 -0.38 0.64 16 27 H 0.05 0.46 7.94 -51.92 -0.41 0.04 16 28 H 0.08 1.11 7.09 -51.93 -0.37 0.74 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.13 1.76 5.92 -52.49 -0.31 1.44 16 33 H 0.06 0.92 7.52 -51.93 -0.39 0.53 16 34 H 0.09 1.31 6.93 -51.93 -0.36 0.95 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.20 7.12 -51.93 -0.37 0.83 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.09 6.80 -51.93 -0.35 0.73 16 41 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 42 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -29.46 329.15 -8.84 -38.30 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.92 Total: 1.48 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.57 Total: -1.18 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.35 Total: -50.44 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.46 -8.84 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049292685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.475 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds