Wall clock time and date at job start Tue Mar 31 2020 00:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50694 * 120.00524 * 2 1 4 4 C 1.33000 * 119.99456 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00058 * 359.97438 * 4 2 1 6 6 O 1.21617 * 120.00093 * 5.03310 * 5 4 2 7 7 N 1.34778 * 119.99816 * 185.03647 * 5 4 2 8 8 C 1.46800 * 119.57546 * 174.65397 * 7 5 4 9 9 C 1.53469 * 107.59357 * 127.93837 * 8 7 5 10 10 C 1.52737 * 108.43744 * 58.08231 * 9 8 7 11 11 C 1.53040 * 110.82031 * 296.25494 * 10 9 8 12 12 H 1.09004 * 111.38301 * 291.21138 * 11 10 9 13 13 C 1.45118 * 119.57918 * 354.67339 * 7 5 4 14 14 H 1.09000 * 109.97062 * 348.06780 * 13 7 5 15 15 C 1.54421 * 111.60088 * 111.35161 * 13 7 5 16 16 C 1.54568 * 102.44873 * 156.57737 * 15 13 7 17 17 N 1.47121 * 107.25394 * 338.32943 * 16 15 13 18 18 C 1.36932 * 125.76816 * 177.42412 * 17 16 15 19 19 H 1.07997 * 120.00177 * 179.97438 * 18 17 16 20 20 C 1.38811 * 120.00122 * 359.97438 * 18 17 16 21 21 N 1.31625 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00401 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47257 * 119.99716 * 22 20 18 25 25 H 1.48498 * 109.47567 * 240.00285 * 22 20 18 26 26 H 1.08996 * 109.47641 * 240.00458 * 1 2 3 27 27 H 1.09007 * 109.46960 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47314 * 119.99466 * 1 2 3 29 29 H 1.08995 * 109.47533 * 269.99697 * 3 2 1 30 30 H 1.08995 * 109.47330 * 30.00087 * 3 2 1 31 31 H 1.09000 * 109.47337 * 149.99767 * 3 2 1 32 32 H 1.08000 * 120.00123 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.84052 * 247.45887 * 8 7 5 34 34 H 1.08997 * 109.83562 * 8.41626 * 8 7 5 35 35 H 1.08999 * 109.64720 * 177.77007 * 9 8 7 36 36 H 1.09007 * 109.64097 * 298.19022 * 9 8 7 37 37 H 1.08998 * 109.20989 * 56.57519 * 10 9 8 38 38 H 1.09001 * 109.21112 * 175.93623 * 10 9 8 39 39 H 1.08996 * 110.81305 * 274.81256 * 15 13 7 40 40 H 1.09004 * 110.81304 * 38.33853 * 15 13 7 41 41 H 1.09000 * 109.88429 * 218.92196 * 16 15 13 42 42 H 1.08991 * 109.88755 * 97.74849 * 16 15 13 43 43 H 0.96994 * 120.00027 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1718 -1.1519 -0.0005 5 6 1.4362 -2.4257 -0.0005 6 8 0.2235 -2.4276 -0.0924 7 7 2.1062 -3.5907 0.1014 8 6 1.3586 -4.8486 0.2192 9 6 1.8903 -5.8067 -0.8553 10 6 3.3899 -5.9954 -0.6348 11 6 4.1388 -4.6751 -0.8297 12 1 4.1260 -4.3613 -1.8736 13 6 3.5574 -3.5856 0.0938 14 1 3.9246 -2.6051 -0.2093 15 6 4.1345 -3.9839 1.4696 16 6 5.5448 -4.4993 1.1028 17 7 5.5158 -4.8751 -0.3194 18 6 6.5809 -5.3327 -1.0482 19 1 6.4541 -5.5828 -2.0911 20 6 7.8237 -5.4751 -0.4465 21 7 7.9783 -5.1707 0.8247 22 14 9.2766 -6.1000 -1.4405 23 1 8.8431 -6.3696 -2.8349 24 1 10.3504 -5.0742 -1.4461 25 1 9.7916 -7.3523 -0.8309 26 1 -0.3634 -0.5137 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 2.4423 1.6196 -1.0276 30 1 1.6716 2.0647 0.5138 31 1 3.2129 1.1746 0.5139 32 1 3.2518 -1.1520 -0.0001 33 1 1.5134 -5.2797 1.2083 34 1 0.2966 -4.6642 0.0574 35 1 1.3838 -6.7682 -0.7721 36 1 1.7126 -5.3833 -1.8440 37 1 3.5605 -6.3578 0.3789 38 1 3.7673 -6.7298 -1.3464 39 1 4.1980 -3.1178 2.1283 40 1 3.5392 -4.7754 1.9249 41 1 5.7914 -5.3695 1.7112 42 1 6.2808 -3.7116 1.2632 43 1 8.8466 -5.2706 1.2452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049292685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:23 Heat of formation + Delta-G solvation = -7.530961 kcal Electronic energy + Delta-G solvation = -22841.565626 eV Core-core repulsion = 19694.027901 eV Total energy + Delta-G solvation = -3147.537725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68367 -39.70928 -36.88509 -36.04881 -34.15123 -33.92628 -30.82738 -30.06018 -28.77308 -28.56918 -26.38583 -25.68962 -23.44008 -22.25357 -21.76766 -20.19864 -19.06856 -18.51263 -18.31675 -16.77356 -16.67874 -16.22823 -15.99879 -15.49967 -15.12198 -15.02566 -14.77698 -14.66101 -14.22159 -14.13385 -13.74086 -13.45158 -13.29725 -13.17519 -13.10063 -12.84192 -12.65615 -12.52475 -12.40087 -12.31290 -12.20188 -12.00722 -11.90502 -11.57504 -11.49069 -11.21343 -10.69858 -10.48737 -10.13890 -9.47052 -8.86563 -7.82300 -5.17505 0.42930 1.47811 1.48285 1.58136 2.05651 2.28000 2.51667 3.35730 3.45792 3.73077 3.78402 3.90284 3.94924 4.04766 4.10884 4.18393 4.22537 4.42389 4.58075 4.60335 4.62975 4.68618 4.72861 4.81049 4.83902 4.88087 4.94313 5.01032 5.04110 5.05698 5.13093 5.22194 5.32695 5.43857 5.55928 5.56813 5.60250 5.66411 5.71608 5.79663 6.19988 6.48475 7.12074 7.22003 7.77665 8.42679 9.27722 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021985 B = 0.005015 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.262228 B = 5582.091156 C = 6320.620658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.022 4.022 3 C -0.126 4.126 4 C -0.262 4.262 5 C 0.542 3.458 6 O -0.573 6.573 7 N -0.591 5.591 8 C 0.112 3.888 9 C -0.119 4.119 10 C -0.120 4.120 11 C 0.148 3.852 12 H 0.057 0.943 13 C 0.142 3.858 14 H 0.101 0.899 15 C -0.137 4.137 16 C 0.191 3.809 17 N -0.615 5.615 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.062 4.062 21 N -0.950 5.950 22 Si 0.973 3.027 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.295 1.295 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.005 0.995 42 H 0.020 0.980 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 8.632 -0.822 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.024 4.024 3 C -0.182 4.182 4 C -0.282 4.282 5 C 0.336 3.664 6 O -0.456 6.456 7 N -0.321 5.321 8 C -0.010 4.010 9 C -0.158 4.158 10 C -0.160 4.160 11 C 0.041 3.959 12 H 0.075 0.925 13 C 0.037 3.963 14 H 0.119 0.881 15 C -0.177 4.177 16 C 0.066 3.934 17 N -0.340 5.340 18 C -0.362 4.362 19 H 0.099 0.901 20 C -0.255 4.255 21 N -0.600 5.600 22 Si 0.802 3.198 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.222 1.222 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.023 0.977 42 H 0.039 0.961 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.838 8.552 -0.848 16.290 hybrid contribution 1.480 -0.840 -0.215 1.715 sum -12.358 7.712 -1.063 14.606 Atomic orbital electron populations 1.20986 0.90962 1.02077 1.02805 1.22914 0.96953 0.95250 0.87316 1.21097 1.00223 0.92912 1.03981 1.22580 1.00675 0.91695 1.13273 1.18932 0.86918 0.84988 0.75569 1.90701 1.14747 1.87776 1.52406 1.47493 1.05968 1.06902 1.71776 1.21723 0.96868 0.83189 0.99226 1.21824 0.95097 1.00093 0.98751 1.21925 0.94797 0.98233 1.01021 1.21561 0.84584 0.93711 0.96033 0.92526 1.21646 0.78689 1.00070 0.95942 0.88122 1.22979 0.96683 1.01199 0.96796 1.20876 0.91960 0.96248 0.84314 1.44922 1.04895 1.76765 1.07423 1.19417 0.87660 1.35444 0.93692 0.90148 1.25536 1.00051 1.02685 0.97214 1.70164 1.22900 1.55529 1.11365 0.85086 0.79484 0.76998 0.78231 1.19171 1.21984 1.22233 0.91666 0.90400 0.91412 0.89061 0.89182 0.90709 0.84911 0.91085 0.88866 0.88968 0.91891 0.93266 0.93404 0.90101 0.91244 0.97663 0.96146 0.94469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.33 71.23 0.59 -1.83 16 2 C -0.02 -0.48 6.11 -17.62 -0.11 -0.59 16 3 C -0.13 -1.85 9.98 71.23 0.71 -1.14 16 4 C -0.26 -6.88 8.86 23.43 0.21 -6.68 16 5 C 0.54 16.77 7.56 86.57 0.65 17.43 16 6 O -0.57 -19.46 12.43 -4.09 -0.05 -19.51 16 7 N -0.59 -18.07 2.73 -798.62 -2.18 -20.26 16 8 C 0.11 3.10 6.17 86.48 0.53 3.63 16 9 C -0.12 -3.24 6.11 30.66 0.19 -3.05 16 10 C -0.12 -4.19 5.10 30.52 0.16 -4.04 16 11 C 0.15 5.80 3.60 45.09 0.16 5.96 16 12 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 13 C 0.14 4.79 2.95 46.14 0.14 4.93 16 14 H 0.10 3.33 5.36 -2.39 -0.01 3.32 16 15 C -0.14 -4.92 6.08 31.61 0.19 -4.73 16 16 C 0.19 9.11 5.19 86.79 0.45 9.56 16 17 N -0.62 -30.11 2.91 -667.02 -1.94 -32.05 16 18 C -0.23 -12.64 10.29 84.03 0.86 -11.78 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 21 N -0.95 -55.92 10.33 21.65 0.22 -55.70 16 22 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 26 H 0.06 1.61 7.36 -2.39 -0.02 1.59 16 27 H 0.08 1.21 7.94 -2.38 -0.02 1.19 16 28 H 0.07 1.71 7.09 -2.39 -0.02 1.69 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.00 8.05 -2.39 -0.02 0.98 16 31 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 32 H 0.13 3.38 5.92 -2.91 -0.02 3.37 16 33 H 0.07 1.88 7.52 -2.39 -0.02 1.87 16 34 H 0.09 2.56 6.93 -2.39 -0.02 2.54 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.05 1.85 7.12 -2.39 -0.02 1.83 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.07 2.39 6.80 -2.38 -0.02 2.37 16 41 H 0.01 0.28 7.60 -2.39 -0.02 0.26 16 42 H 0.02 1.08 7.30 -2.39 -0.02 1.07 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -64.69 329.15 4.27 -60.42 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.99 Total: 15.30 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.21 Total: 4.69 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -3.90 Total: -108.01 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.69 4.27 -60.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049292685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.892 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds