Wall clock time and date at job start Tue Mar 31 2020 00:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 H 1.08996 * 115.56121 * 29.31254 * 3 2 1 5 5 C 1.53004 * 117.49980 * 243.62202 * 3 2 1 6 6 C 1.52995 * 60.00053 * 252.51336 * 5 3 2 7 7 H 1.08996 * 117.50430 * 107.51328 * 6 5 3 8 8 C 1.50707 * 117.49560 * 252.51436 * 6 5 3 9 9 O 1.21277 * 120.00411 * 68.60873 * 8 6 5 10 10 N 1.34773 * 119.99700 * 248.60947 * 8 6 5 11 11 C 1.47854 * 134.36258 * 180.02562 * 10 8 6 12 12 C 1.52561 * 85.66644 * 156.38278 * 11 10 8 13 13 C 1.47854 * 134.36539 * 0.02562 * 10 8 6 14 14 C 1.53852 * 115.93530 * 265.04038 * 12 11 10 15 15 C 1.55405 * 101.30452 * 196.13924 * 14 12 11 16 16 N 1.47545 * 104.88411 * 35.96937 * 15 14 12 17 17 C 1.36935 * 125.65486 * 155.98522 * 16 15 14 18 18 H 1.08004 * 119.99735 * 193.15174 * 17 16 15 19 19 C 1.38812 * 120.00408 * 13.15764 * 17 16 15 20 20 N 1.31618 * 119.99777 * 27.42234 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 207.42630 * 19 17 16 22 22 H 1.48495 * 109.47250 * 89.99789 * 21 19 17 23 23 H 1.48500 * 109.46961 * 329.99846 * 21 19 17 24 24 H 1.48496 * 109.47122 * 210.00167 * 21 19 17 25 25 C 1.47359 * 108.68009 * 335.72450 * 16 15 14 26 26 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46942 * 299.99793 * 1 2 3 28 28 H 1.08999 * 109.47097 * 59.99679 * 1 2 3 29 29 H 1.09001 * 109.46942 * 240.00207 * 2 1 3 30 30 H 1.08999 * 109.47097 * 120.00321 * 2 1 3 31 31 H 1.08997 * 117.49283 * 145.01611 * 5 3 2 32 32 H 1.08997 * 117.51325 * 359.97438 * 5 3 2 33 33 H 1.08997 * 113.84506 * 42.19888 * 11 10 8 34 34 H 1.09004 * 113.95189 * 270.58084 * 11 10 8 35 35 H 1.08995 * 113.84306 * 89.42909 * 13 10 8 36 36 H 1.09007 * 113.84069 * 317.79510 * 13 10 8 37 37 H 1.09002 * 111.03470 * 314.36465 * 14 12 11 38 38 H 1.09006 * 111.03985 * 78.26166 * 14 12 11 39 39 H 1.09002 * 110.48277 * 277.08695 * 15 14 12 40 40 H 1.08994 * 110.30554 * 154.77034 * 15 14 12 41 41 H 0.97002 * 120.00045 * 5.84524 * 20 19 17 42 42 H 1.09006 * 109.98459 * 121.63744 * 25 16 15 43 43 H 1.09005 * 109.98582 * 242.93620 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1806 0.7721 0.1959 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6168 1.3913 10 7 5.3424 3.1000 1.0273 11 6 6.1400 4.1498 1.6966 12 6 7.2585 3.1130 1.7353 13 6 6.5693 2.4155 0.5665 14 6 7.3730 2.2949 3.0333 15 6 8.7997 1.6956 2.8908 16 7 9.5914 2.7537 2.2346 17 6 10.9514 2.8952 2.3087 18 1 11.4180 3.8107 1.9760 19 6 11.7304 1.8620 2.8113 20 7 11.3143 0.6171 2.7147 21 14 13.3691 2.2386 3.6250 22 1 13.1613 2.4568 5.0791 23 1 13.9529 3.4624 3.0193 24 1 14.2960 1.0961 3.4234 25 6 8.6763 3.6291 1.4810 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.7212 2.9427 -1.5343 32 1 3.0101 1.1860 -2.0157 33 1 5.7637 4.4288 2.6807 34 1 6.3586 5.0102 1.0641 35 1 6.9177 2.7467 -0.4117 36 1 6.5306 1.3303 0.6620 37 1 7.3006 2.9391 3.9095 38 1 6.6207 1.5067 3.0667 39 1 8.7770 0.7997 2.2703 40 1 9.2137 1.4668 3.8728 41 1 10.5061 0.4130 2.2185 42 1 8.7678 4.6562 1.8346 43 1 8.9055 3.5795 0.4165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072997382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:58 Heat of formation + Delta-G solvation = 40.436758 kcal Electronic energy + Delta-G solvation = -21782.835550 eV Core-core repulsion = 18637.377861 eV Total energy + Delta-G solvation = -3145.457689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72160 -39.10108 -36.94766 -35.81241 -32.45713 -32.20142 -29.55332 -28.89849 -26.43622 -25.84527 -24.31606 -23.96419 -22.95502 -20.67638 -20.39699 -19.10001 -18.43351 -17.46817 -17.08601 -16.12225 -15.63361 -15.05516 -14.77447 -14.61567 -14.17269 -13.77843 -13.60532 -13.46712 -13.15048 -12.73191 -12.66476 -12.43237 -12.34370 -12.13260 -11.81707 -11.56991 -11.31450 -11.24126 -10.77516 -10.62140 -10.50508 -10.46259 -10.37737 -10.25483 -10.12793 -10.01277 -9.65606 -9.50806 -8.63293 -8.43323 -6.98842 -6.11432 -3.14290 2.49375 2.76939 3.50829 3.53135 3.65600 3.69220 4.19434 4.49768 4.55418 4.57765 4.59039 4.79208 4.89546 4.97635 5.05037 5.08652 5.19330 5.30929 5.40787 5.42337 5.43362 5.52795 5.55514 5.65770 5.66735 5.71552 5.73586 5.82928 5.86309 5.91250 6.01063 6.04596 6.15254 6.21869 6.35126 6.54101 6.59696 6.96283 6.98709 7.72291 7.76503 8.19219 8.45957 8.99533 9.79471 10.33363 11.22169 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.003354 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.387192 B = 8345.606861 C = 8723.328903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.184 4.184 7 H 0.122 0.878 8 C 0.564 3.436 9 O -0.551 6.551 10 N -0.636 5.636 11 C 0.123 3.877 12 C -0.104 4.104 13 C 0.120 3.880 14 C -0.110 4.110 15 C 0.146 3.854 16 N -0.604 5.604 17 C -0.336 4.336 18 H 0.067 0.933 19 C -0.026 4.026 20 N -0.921 5.921 21 Si 1.067 2.933 22 H -0.293 1.293 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.152 3.848 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.269 0.731 42 H 0.033 0.967 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 0.326 -6.651 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.137 4.137 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.205 4.205 7 H 0.140 0.860 8 C 0.354 3.646 9 O -0.429 6.429 10 N -0.371 5.371 11 C 0.001 3.999 12 C -0.105 4.105 13 C -0.002 4.002 14 C -0.149 4.149 15 C 0.021 3.979 16 N -0.332 5.332 17 C -0.463 4.463 18 H 0.085 0.915 19 C -0.227 4.227 20 N -0.563 5.563 21 Si 0.897 3.103 22 H -0.221 1.221 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.026 3.974 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.986 0.041 -5.597 16.938 hybrid contribution -1.086 0.707 -0.963 1.615 sum -17.072 0.748 -6.560 18.305 Atomic orbital electron populations 1.21735 0.95194 1.01610 1.02093 1.21160 0.96234 0.93632 1.02258 1.22478 0.91491 0.98689 1.01023 0.86521 1.23085 1.02105 1.03015 0.90380 1.22228 0.97406 0.99009 1.01891 0.86043 1.19299 0.80350 0.85488 0.79510 1.90669 1.52979 1.49615 1.49670 1.50088 1.03646 1.28995 1.54357 1.23032 0.87019 0.91978 0.97878 1.22458 0.95122 0.96314 0.96636 1.23146 0.80330 0.98736 0.97984 1.22544 0.98886 0.98513 0.94929 1.21651 0.87781 0.91288 0.97215 1.44656 1.02503 1.30917 1.55079 1.19800 0.80678 1.01332 1.44499 0.91480 1.25708 1.03706 0.92204 1.01120 1.70764 1.25170 1.17977 1.42351 0.83478 0.75398 0.74796 0.76611 1.22098 1.21920 1.21660 1.21002 0.86500 0.94626 0.95286 0.92615 0.92514 0.92570 0.91622 0.91335 0.88452 0.87813 0.90003 0.89662 0.89356 0.89875 0.91067 0.91778 0.95615 0.92758 0.91918 0.94893 0.95450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.87 37.15 0.37 -0.72 16 2 C -0.10 -0.79 6.22 -26.73 -0.17 -0.95 16 3 C -0.12 -1.22 5.25 -90.61 -0.48 -1.70 16 4 H 0.12 1.39 7.60 -51.93 -0.39 1.00 16 5 C -0.15 -1.43 9.88 -26.73 -0.26 -1.69 16 6 C -0.18 -2.15 5.65 -91.77 -0.52 -2.66 16 7 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 8 C 0.56 8.54 7.84 -10.98 -0.09 8.45 16 9 O -0.55 -10.15 16.98 5.56 0.09 -10.05 16 10 N -0.64 -9.20 3.62 -185.61 -0.67 -9.87 16 11 C 0.12 1.77 8.16 -3.52 -0.03 1.74 16 12 C -0.10 -1.65 0.97 -154.71 -0.15 -1.80 16 13 C 0.12 1.65 7.85 -3.52 -0.03 1.62 16 14 C -0.11 -1.92 6.43 -25.01 -0.16 -2.08 16 15 C 0.15 3.27 5.25 -2.19 -0.01 3.25 16 16 N -0.60 -14.77 3.34 -170.19 -0.57 -15.34 16 17 C -0.34 -9.27 10.05 -15.06 -0.15 -9.42 16 18 H 0.07 1.85 7.96 -52.48 -0.42 1.43 16 19 C -0.03 -0.74 5.09 -17.43 -0.09 -0.82 16 20 N -0.92 -27.33 12.82 55.49 0.71 -26.62 16 21 Si 1.07 25.14 30.00 -169.99 -5.10 20.04 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.15 2.96 6.75 -3.56 -0.02 2.93 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.48 7.88 -51.93 -0.41 0.07 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 33 H 0.08 1.19 8.12 -51.93 -0.42 0.77 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.11 8.00 -51.93 -0.42 0.70 16 36 H 0.08 1.09 8.12 -51.92 -0.42 0.67 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 39 H 0.03 0.61 6.83 -51.93 -0.35 0.25 16 40 H 0.05 1.36 7.73 -51.93 -0.40 0.95 16 41 H 0.27 7.92 5.83 -40.82 -0.24 7.68 16 42 H 0.03 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.03 0.53 7.86 -51.93 -0.41 0.13 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -32.27 348.59 -9.38 -41.65 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.32 Total: -1.20 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.79 Total: -3.86 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.53 Total: -51.83 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.27 -9.38 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072997382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.088 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds