Wall clock time and date at job start Tue Mar 31 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47353 * 2 1 4 4 H 1.08996 * 115.56121 * 29.31254 * 3 2 1 5 5 C 1.53004 * 117.49980 * 243.62202 * 3 2 1 6 6 C 1.52995 * 60.00053 * 252.51336 * 5 3 2 7 7 H 1.08996 * 117.50430 * 107.51328 * 6 5 3 8 8 C 1.50707 * 117.49560 * 252.51436 * 6 5 3 9 9 O 1.21277 * 120.00411 * 68.60873 * 8 6 5 10 10 N 1.34773 * 119.99700 * 248.60947 * 8 6 5 11 11 C 1.47854 * 134.36258 * 180.02562 * 10 8 6 12 12 C 1.52561 * 85.66644 * 156.38278 * 11 10 8 13 13 C 1.47854 * 134.36539 * 0.02562 * 10 8 6 14 14 C 1.53852 * 115.93530 * 265.04038 * 12 11 10 15 15 C 1.55405 * 101.30452 * 196.13924 * 14 12 11 16 16 N 1.47545 * 104.88411 * 35.96937 * 15 14 12 17 17 C 1.36935 * 125.65486 * 155.98522 * 16 15 14 18 18 H 1.08004 * 119.99735 * 193.15174 * 17 16 15 19 19 C 1.38812 * 120.00408 * 13.15764 * 17 16 15 20 20 N 1.31618 * 119.99777 * 27.42234 * 19 17 16 21 21 Si 1.86797 * 120.00036 * 207.42630 * 19 17 16 22 22 H 1.48495 * 109.47250 * 89.99789 * 21 19 17 23 23 H 1.48500 * 109.46961 * 329.99846 * 21 19 17 24 24 H 1.48496 * 109.47122 * 210.00167 * 21 19 17 25 25 C 1.47359 * 108.68009 * 335.72450 * 16 15 14 26 26 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46942 * 299.99793 * 1 2 3 28 28 H 1.08999 * 109.47097 * 59.99679 * 1 2 3 29 29 H 1.09001 * 109.46942 * 240.00207 * 2 1 3 30 30 H 1.08999 * 109.47097 * 120.00321 * 2 1 3 31 31 H 1.08997 * 117.49283 * 145.01611 * 5 3 2 32 32 H 1.08997 * 117.51325 * 359.97438 * 5 3 2 33 33 H 1.08997 * 113.84506 * 42.19888 * 11 10 8 34 34 H 1.09004 * 113.95189 * 270.58084 * 11 10 8 35 35 H 1.08995 * 113.84306 * 89.42909 * 13 10 8 36 36 H 1.09007 * 113.84069 * 317.79510 * 13 10 8 37 37 H 1.09002 * 111.03470 * 314.36465 * 14 12 11 38 38 H 1.09006 * 111.03985 * 78.26166 * 14 12 11 39 39 H 1.09002 * 110.48277 * 277.08695 * 15 14 12 40 40 H 1.08994 * 110.30554 * 154.77034 * 15 14 12 41 41 H 0.97002 * 120.00045 * 5.84524 * 20 19 17 42 42 H 1.09006 * 109.98459 * 121.63744 * 25 16 15 43 43 H 1.09005 * 109.98582 * 242.93620 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6578 0.1182 7 1 4.1806 0.7721 0.1959 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6168 1.3913 10 7 5.3424 3.1000 1.0273 11 6 6.1400 4.1498 1.6966 12 6 7.2585 3.1130 1.7353 13 6 6.5693 2.4155 0.5665 14 6 7.3730 2.2949 3.0333 15 6 8.7997 1.6956 2.8908 16 7 9.5914 2.7537 2.2346 17 6 10.9514 2.8952 2.3087 18 1 11.4180 3.8107 1.9760 19 6 11.7304 1.8620 2.8113 20 7 11.3143 0.6171 2.7147 21 14 13.3691 2.2386 3.6250 22 1 13.1613 2.4568 5.0791 23 1 13.9529 3.4624 3.0193 24 1 14.2960 1.0961 3.4234 25 6 8.6763 3.6291 1.4810 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.7212 2.9427 -1.5343 32 1 3.0101 1.1860 -2.0157 33 1 5.7637 4.4288 2.6807 34 1 6.3586 5.0102 1.0641 35 1 6.9177 2.7467 -0.4117 36 1 6.5306 1.3303 0.6620 37 1 7.3006 2.9391 3.9095 38 1 6.6207 1.5067 3.0667 39 1 8.7770 0.7997 2.2703 40 1 9.2137 1.4668 3.8728 41 1 10.5061 0.4130 2.2185 42 1 8.7678 4.6562 1.8346 43 1 8.9055 3.5795 0.4165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072997382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:57 Heat of formation + Delta-G solvation = 21.935148 kcal Electronic energy + Delta-G solvation = -21783.637840 eV Core-core repulsion = 18637.377861 eV Total energy + Delta-G solvation = -3146.259979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.95520 -40.24225 -38.05478 -37.35623 -34.23860 -32.96599 -31.19141 -30.43064 -27.66143 -27.30322 -25.91169 -24.79421 -24.03537 -22.23413 -21.40843 -20.30192 -19.83197 -19.29641 -18.19082 -17.32845 -16.83651 -16.45815 -15.91486 -15.60009 -15.55486 -15.43001 -15.06269 -14.79951 -14.53039 -13.98062 -13.64530 -13.62033 -13.40099 -13.27571 -13.00561 -12.71564 -12.59296 -12.45040 -12.22837 -12.05599 -11.97147 -11.94832 -11.87671 -11.55033 -11.47683 -11.27106 -11.05177 -10.77469 -10.50911 -9.80020 -9.00592 -8.29817 -5.28593 1.40021 1.59705 1.66530 1.66988 1.84166 2.65492 2.80395 3.15064 3.19838 3.34432 3.50146 3.57594 3.72516 3.80206 3.95556 3.99374 4.06874 4.24985 4.31909 4.39553 4.46188 4.50335 4.51989 4.56169 4.63376 4.72797 4.73929 4.75244 4.90243 4.91904 4.97054 5.00250 5.08213 5.13913 5.18892 5.20240 5.26477 5.27705 5.47477 5.67837 6.34687 6.59923 6.92749 7.03862 7.72621 8.30618 9.04200 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.003354 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.387192 B = 8345.606861 C = 8723.328903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.119 4.119 4 H 0.095 0.905 5 C -0.132 4.132 6 C -0.196 4.196 7 H 0.136 0.864 8 C 0.558 3.442 9 O -0.591 6.591 10 N -0.636 5.636 11 C 0.126 3.874 12 C -0.098 4.098 13 C 0.129 3.871 14 C -0.095 4.095 15 C 0.152 3.848 16 N -0.627 5.627 17 C -0.342 4.342 18 H 0.063 0.937 19 C -0.079 4.079 20 N -0.950 5.950 21 Si 1.116 2.884 22 H -0.288 1.288 23 H -0.272 1.272 24 H -0.294 1.294 25 C 0.150 3.850 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.013 0.987 40 H 0.017 0.983 41 H 0.258 0.742 42 H 0.037 0.963 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.564 0.397 -7.830 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.137 4.137 4 H 0.113 0.887 5 C -0.169 4.169 6 C -0.217 4.217 7 H 0.154 0.846 8 C 0.350 3.650 9 O -0.473 6.473 10 N -0.369 5.369 11 C 0.004 3.996 12 C -0.099 4.099 13 C 0.007 3.993 14 C -0.133 4.133 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.471 4.471 18 H 0.081 0.919 19 C -0.275 4.275 20 N -0.594 5.594 21 Si 0.941 3.059 22 H -0.215 1.215 23 H -0.197 1.197 24 H -0.221 1.221 25 C 0.025 3.975 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.811 0.134 -6.796 18.134 hybrid contribution -0.860 0.743 -0.610 1.289 sum -17.671 0.877 -7.406 19.180 Atomic orbital electron populations 1.21736 0.94645 1.02323 1.01903 1.21170 0.96699 0.92162 1.02877 1.22500 0.90379 0.99542 1.01310 0.88659 1.23195 1.00128 1.03389 0.90167 1.22259 0.98357 0.97988 1.03088 0.84603 1.19897 0.79990 0.85996 0.79119 1.90649 1.53887 1.51264 1.51454 1.50094 1.03795 1.28939 1.54082 1.23049 0.85963 0.92182 0.98421 1.22315 0.93654 0.97191 0.96763 1.23193 0.79153 0.99196 0.97735 1.22386 0.95896 0.98985 0.96026 1.21516 0.90194 0.90927 0.94747 1.44916 1.02351 1.31936 1.56289 1.20055 0.82533 1.00848 1.43638 0.91915 1.27011 1.06841 0.91883 1.01771 1.70866 1.25501 1.19001 1.44017 0.82827 0.71916 0.75177 0.76002 1.21472 1.19690 1.22094 1.21131 0.87542 0.93996 0.94820 0.91429 0.93359 0.92179 0.90027 0.91634 0.89128 0.85129 0.90208 0.87832 0.87551 0.88910 0.90951 0.89911 0.96977 0.96446 0.93070 0.94502 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.87 71.98 0.71 -1.20 16 2 C -0.09 -1.31 6.22 30.59 0.19 -1.12 16 3 C -0.12 -2.26 5.25 -10.79 -0.06 -2.31 16 4 H 0.10 2.25 7.60 -2.39 -0.02 2.23 16 5 C -0.13 -2.19 9.88 30.59 0.30 -1.89 16 6 C -0.20 -4.15 5.65 -11.54 -0.07 -4.21 16 7 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 8 C 0.56 16.08 7.84 87.66 0.69 16.77 16 9 O -0.59 -21.49 16.98 -3.02 -0.05 -21.54 16 10 N -0.64 -16.99 3.62 -859.53 -3.11 -20.10 16 11 C 0.13 3.36 8.16 85.97 0.70 4.06 16 12 C -0.10 -2.94 0.97 -52.11 -0.05 -2.99 16 13 C 0.13 3.20 7.85 85.97 0.67 3.88 16 14 C -0.09 -3.21 6.43 31.71 0.20 -3.00 16 15 C 0.15 6.88 5.25 87.01 0.46 7.34 16 16 N -0.63 -30.80 3.34 -692.36 -2.31 -33.11 16 17 C -0.34 -19.05 10.05 84.03 0.84 -18.20 16 18 H 0.06 3.46 7.96 -2.91 -0.02 3.44 16 19 C -0.08 -4.51 5.09 84.86 0.43 -4.08 16 20 N -0.95 -57.60 12.82 21.65 0.28 -57.32 16 21 Si 1.12 50.97 30.00 68.60 2.06 53.03 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 25 C 0.15 5.67 6.75 86.22 0.58 6.25 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.92 7.88 -2.39 -0.02 0.90 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.13 1.49 8.03 -2.39 -0.02 1.47 16 33 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 34 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.11 2.32 8.00 -2.39 -0.02 2.30 16 36 H 0.09 2.17 8.12 -2.38 -0.02 2.15 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 38 H 0.08 2.51 8.06 -2.38 -0.02 2.49 16 39 H 0.01 0.60 6.83 -2.39 -0.02 0.58 16 40 H 0.02 0.89 7.73 -2.39 -0.02 0.87 16 41 H 0.26 15.67 5.83 -92.71 -0.54 15.13 16 42 H 0.04 1.37 8.09 -2.38 -0.02 1.35 16 43 H 0.03 1.19 7.86 -2.38 -0.02 1.17 16 Total: -1.00 -70.81 348.59 3.67 -67.14 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.20 Total: 12.61 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.61 Total: -0.71 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -5.14 Total: -110.53 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.06 Total: 53.03 kcal Total: -70.81 3.67 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072997382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.076 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds