Wall clock time and date at job start Tue Mar 31 2020 00:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09008 * 115.55064 * 29.27680 * 3 2 1 5 5 C 1.53000 * 117.49920 * 243.60899 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.47484 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.47395 * 125.58796 * 0.02759 * 10 8 6 12 12 C 1.54861 * 104.80832 * 204.60568 * 11 10 8 13 13 C 1.55122 * 101.77921 * 322.81678 * 12 11 10 14 14 H 1.08999 * 113.46703 * 158.33596 * 13 12 11 15 15 C 1.54049 * 108.25651 * 285.18549 * 13 12 11 16 16 N 1.46706 * 106.82679 * 135.80494 * 15 13 12 17 17 C 1.36942 * 125.31732 * 161.79626 * 16 15 13 18 18 H 1.08000 * 120.00217 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99673 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00052 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47143 * 120.00036 * 21 19 17 24 24 H 1.48508 * 109.47030 * 239.99514 * 21 19 17 25 25 C 1.46630 * 109.35773 * 341.81980 * 16 15 13 26 26 C 1.46734 * 125.58711 * 179.71841 * 10 8 6 27 27 H 1.09000 * 111.32890 * 56.12668 * 26 10 8 28 28 H 1.09003 * 109.47059 * 60.00042 * 1 2 3 29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47208 * 300.00339 * 1 2 3 31 31 H 1.08995 * 109.46784 * 239.99741 * 2 1 3 32 32 H 1.08999 * 109.46571 * 120.00049 * 2 1 3 33 33 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 34 34 H 1.09002 * 117.49953 * 144.97630 * 5 3 2 35 35 H 1.08992 * 110.37329 * 323.43705 * 11 10 8 36 36 H 1.08995 * 110.37233 * 85.77938 * 11 10 8 37 37 H 1.09000 * 110.96567 * 80.93569 * 12 11 10 38 38 H 1.08999 * 110.96665 * 204.69372 * 12 11 10 39 39 H 1.09000 * 109.98247 * 255.14681 * 15 13 12 40 40 H 1.08999 * 109.98815 * 16.42337 * 15 13 12 41 41 H 0.97002 * 119.99879 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.75538 * 120.92834 * 25 16 15 43 43 H 1.08997 * 109.75631 * 241.63080 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5507 1.6588 0.1185 7 1 4.1816 0.7733 0.1966 8 6 4.0226 2.8636 0.8911 9 8 3.2150 3.6180 1.3907 10 7 5.3420 3.1027 1.0269 11 6 6.4259 2.2715 0.4730 12 6 7.6468 2.5558 1.3821 13 6 7.4773 4.0695 1.6758 14 1 7.9965 4.3977 2.5763 15 6 7.8833 4.8544 0.4140 16 7 6.8684 5.8952 0.2164 17 6 7.0220 7.0137 -0.5586 18 1 7.9497 7.1826 -1.0852 19 6 5.9854 7.9304 -0.6673 20 7 4.8546 7.7243 -0.0259 21 14 6.1946 9.4558 -1.7251 22 1 7.5480 9.4527 -2.3359 23 1 5.1670 9.4594 -2.7972 24 1 6.0350 10.6682 -0.8824 25 6 5.6643 5.5509 0.9790 26 6 5.9349 4.2367 1.7449 27 1 5.5867 4.2782 2.7770 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.0104 1.1855 -2.0153 34 1 2.7211 2.9424 -1.5348 35 1 6.1562 1.2164 0.5189 36 1 6.6416 2.5645 -0.5544 37 1 7.5933 1.9718 2.3010 38 1 8.5802 2.3633 0.8532 39 1 8.8623 5.3111 0.5584 40 1 7.9068 4.1877 -0.4480 41 1 4.1304 8.3651 -0.1016 42 1 5.4419 6.3431 1.6939 43 1 4.8222 5.4211 0.2991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076264691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:01 Heat of formation + Delta-G solvation = 15.224002 kcal Electronic energy + Delta-G solvation = -22612.302124 eV Core-core repulsion = 19465.751128 eV Total energy + Delta-G solvation = -3146.550996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20450 -38.51974 -36.47525 -34.73329 -32.26920 -31.88281 -30.79235 -28.83382 -26.45798 -24.78204 -24.36247 -23.65347 -22.06770 -20.73983 -20.26222 -19.43747 -18.30245 -17.15122 -16.63316 -15.81456 -15.00522 -14.78630 -14.70600 -14.42623 -13.86293 -13.75002 -13.28064 -13.18194 -12.80490 -12.44851 -12.28431 -12.14686 -12.00729 -11.81356 -11.50422 -11.37575 -11.09791 -11.02887 -10.96895 -10.72293 -10.43201 -10.22772 -10.17486 -10.09377 -9.93275 -9.80537 -9.66815 -9.27634 -8.55616 -8.08312 -6.77144 -5.63953 -3.00145 2.93423 3.34318 3.42784 3.47355 3.50749 3.99573 4.52107 4.55391 4.79630 4.81560 4.86792 4.96830 5.11797 5.17043 5.26408 5.29562 5.40210 5.52607 5.56020 5.65295 5.68647 5.76578 5.80474 5.81439 5.84607 5.89583 5.97605 6.05218 6.07195 6.12928 6.26991 6.36159 6.40138 6.52028 6.62454 6.68581 6.91712 7.61134 7.70727 7.93649 8.06641 8.33424 8.69725 9.27563 9.88605 10.52355 11.45826 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017579 B = 0.005290 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.458601 B = 5291.377235 C = 6356.124695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.122 4.122 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.183 4.183 7 H 0.117 0.883 8 C 0.555 3.445 9 O -0.533 6.533 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.096 0.904 15 C 0.143 3.857 16 N -0.603 5.603 17 C -0.233 4.233 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.179 3.821 26 C 0.113 3.887 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.018 0.982 41 H 0.252 0.748 42 H 0.050 0.950 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 -17.376 0.999 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.141 4.141 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.204 4.204 7 H 0.135 0.865 8 C 0.343 3.657 9 O -0.410 6.410 10 N -0.334 5.334 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.131 4.131 14 H 0.114 0.886 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.054 3.946 26 C 0.010 3.990 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.924 -16.787 1.199 16.855 hybrid contribution 0.250 0.836 -0.595 1.056 sum -0.673 -15.952 0.603 15.977 Atomic orbital electron populations 1.21740 0.95315 1.01344 1.02269 1.21129 0.96153 0.93868 1.01832 1.22477 0.91710 0.98348 1.01538 0.86445 1.23087 1.01837 1.03382 0.90170 1.22266 0.97033 0.98853 1.02274 0.86494 1.19158 0.80778 0.85508 0.80257 1.90716 1.52872 1.48588 1.48812 1.48298 1.04541 1.26753 1.53798 1.22279 0.87086 0.94438 0.98141 1.22766 0.97702 0.96364 0.99505 1.23153 0.95198 0.94573 1.00162 0.88574 1.21294 0.93303 0.90719 0.93014 1.44218 1.11140 1.22080 1.55494 1.19059 0.99460 0.96483 1.21111 0.90381 1.24843 0.96155 0.99001 1.00335 1.70013 1.04413 1.36333 1.45466 0.86069 0.77208 0.82978 0.79638 1.20519 1.21791 1.21728 1.21369 0.89670 0.89548 0.94047 1.22816 0.91870 0.88490 0.95866 0.90367 0.92494 0.92840 0.92468 0.91839 0.91643 0.88129 0.88023 0.91359 0.91160 0.91149 0.90005 0.94785 0.96453 0.93719 0.93204 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.87 37.16 0.37 -0.97 16 2 C -0.09 -0.90 6.22 -26.73 -0.17 -1.07 16 3 C -0.12 -1.59 5.25 -90.59 -0.48 -2.06 16 4 H 0.12 1.79 7.60 -51.92 -0.39 1.39 16 5 C -0.15 -1.96 9.88 -26.73 -0.26 -2.22 16 6 C -0.18 -2.61 5.26 -91.73 -0.48 -3.09 16 7 H 0.12 1.35 7.05 -51.93 -0.37 0.98 16 8 C 0.55 10.60 7.21 -10.98 -0.08 10.52 16 9 O -0.53 -12.46 16.24 5.56 0.09 -12.37 16 10 N -0.60 -10.93 2.98 -161.81 -0.48 -11.41 16 11 C 0.10 1.45 6.24 -2.57 -0.02 1.44 16 12 C -0.13 -1.58 6.34 -24.63 -0.16 -1.74 16 13 C -0.11 -1.87 4.28 -87.73 -0.38 -2.25 16 14 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.14 2.91 6.46 -3.38 -0.02 2.89 16 16 N -0.60 -15.78 3.38 -171.39 -0.58 -16.36 16 17 C -0.23 -6.65 10.25 -15.06 -0.15 -6.80 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 20 N -0.92 -28.30 10.24 55.49 0.57 -27.73 16 21 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.18 4.66 4.94 -3.19 -0.02 4.65 16 26 C 0.11 2.29 3.66 -65.80 -0.24 2.05 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.07 0.75 6.98 -51.93 -0.36 0.39 16 36 H 0.07 1.06 7.24 -51.93 -0.38 0.68 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.02 0.35 6.59 -51.93 -0.34 0.01 16 41 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.05 1.46 7.33 -51.93 -0.38 1.08 16 43 H 0.05 1.61 6.80 -51.93 -0.35 1.25 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -34.06 338.02 -9.68 -43.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.17 Total: 0.32 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.18 Total: 1.06 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.49 Total: -55.50 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.06 -9.68 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076264691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.961 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds