Wall clock time and date at job start Tue Mar 31 2020 00:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09008 * 115.55064 * 29.27680 * 3 2 1 5 5 C 1.53000 * 117.49920 * 243.60899 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.47484 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.47395 * 125.58796 * 0.02759 * 10 8 6 12 12 C 1.54861 * 104.80832 * 204.60568 * 11 10 8 13 13 C 1.55122 * 101.77921 * 322.81678 * 12 11 10 14 14 H 1.08999 * 113.46703 * 158.33596 * 13 12 11 15 15 C 1.54049 * 108.25651 * 285.18549 * 13 12 11 16 16 N 1.46706 * 106.82679 * 135.80494 * 15 13 12 17 17 C 1.36942 * 125.31732 * 161.79626 * 16 15 13 18 18 H 1.08000 * 120.00217 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99673 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00052 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47143 * 120.00036 * 21 19 17 24 24 H 1.48508 * 109.47030 * 239.99514 * 21 19 17 25 25 C 1.46630 * 109.35773 * 341.81980 * 16 15 13 26 26 C 1.46734 * 125.58711 * 179.71841 * 10 8 6 27 27 H 1.09000 * 111.32890 * 56.12668 * 26 10 8 28 28 H 1.09003 * 109.47059 * 60.00042 * 1 2 3 29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47208 * 300.00339 * 1 2 3 31 31 H 1.08995 * 109.46784 * 239.99741 * 2 1 3 32 32 H 1.08999 * 109.46571 * 120.00049 * 2 1 3 33 33 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 34 34 H 1.09002 * 117.49953 * 144.97630 * 5 3 2 35 35 H 1.08992 * 110.37329 * 323.43705 * 11 10 8 36 36 H 1.08995 * 110.37233 * 85.77938 * 11 10 8 37 37 H 1.09000 * 110.96567 * 80.93569 * 12 11 10 38 38 H 1.08999 * 110.96665 * 204.69372 * 12 11 10 39 39 H 1.09000 * 109.98247 * 255.14681 * 15 13 12 40 40 H 1.08999 * 109.98815 * 16.42337 * 15 13 12 41 41 H 0.97002 * 119.99879 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.75538 * 120.92834 * 25 16 15 43 43 H 1.08997 * 109.75631 * 241.63080 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5507 1.6588 0.1185 7 1 4.1816 0.7733 0.1966 8 6 4.0226 2.8636 0.8911 9 8 3.2150 3.6180 1.3907 10 7 5.3420 3.1027 1.0269 11 6 6.4259 2.2715 0.4730 12 6 7.6468 2.5558 1.3821 13 6 7.4773 4.0695 1.6758 14 1 7.9965 4.3977 2.5763 15 6 7.8833 4.8544 0.4140 16 7 6.8684 5.8952 0.2164 17 6 7.0220 7.0137 -0.5586 18 1 7.9497 7.1826 -1.0852 19 6 5.9854 7.9304 -0.6673 20 7 4.8546 7.7243 -0.0259 21 14 6.1946 9.4558 -1.7251 22 1 7.5480 9.4527 -2.3359 23 1 5.1670 9.4594 -2.7972 24 1 6.0350 10.6682 -0.8824 25 6 5.6643 5.5509 0.9790 26 6 5.9349 4.2367 1.7449 27 1 5.5867 4.2782 2.7770 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.0104 1.1855 -2.0153 34 1 2.7211 2.9424 -1.5348 35 1 6.1562 1.2164 0.5189 36 1 6.6416 2.5645 -0.5544 37 1 7.5933 1.9718 2.3010 38 1 8.5802 2.3633 0.8532 39 1 8.8623 5.3111 0.5584 40 1 7.9068 4.1877 -0.4480 41 1 4.1304 8.3651 -0.1016 42 1 5.4419 6.3431 1.6939 43 1 4.8222 5.4211 0.2991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076264691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:01 Heat of formation + Delta-G solvation = -6.808910 kcal Electronic energy + Delta-G solvation = -22613.257542 eV Core-core repulsion = 19465.751128 eV Total energy + Delta-G solvation = -3147.506415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.65938 -39.90386 -37.78744 -36.54855 -33.97969 -32.88531 -32.40509 -30.61984 -28.08180 -26.69725 -25.63292 -24.62696 -23.37737 -22.43765 -21.41842 -20.84115 -19.74359 -18.93980 -18.29703 -17.19863 -16.88983 -16.25695 -15.94816 -15.64005 -15.36439 -15.17950 -14.73137 -14.60229 -14.23566 -13.98996 -13.66697 -13.38460 -13.24419 -13.01048 -12.99608 -12.91354 -12.83606 -12.46308 -12.21753 -12.07778 -11.92972 -11.89873 -11.85984 -11.59943 -11.41973 -11.23300 -10.98918 -10.81916 -10.70044 -9.60852 -8.93712 -7.87106 -5.26338 1.40087 1.42520 1.51715 1.53258 1.99673 2.45488 2.86166 3.29886 3.34892 3.57070 3.67340 3.76460 3.78905 3.84664 3.98533 4.09788 4.24767 4.28211 4.44361 4.48481 4.51547 4.57635 4.61091 4.72415 4.75002 4.85615 4.89397 4.93426 4.99450 5.12129 5.15181 5.17776 5.23464 5.29918 5.31370 5.39365 5.42155 5.50476 5.61312 5.75319 6.15140 6.63359 7.04197 7.22766 7.75576 8.37717 9.21567 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017579 B = 0.005290 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.458601 B = 5291.377235 C = 6356.124695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.118 4.118 4 H 0.081 0.919 5 C -0.145 4.145 6 C -0.181 4.181 7 H 0.160 0.840 8 C 0.538 3.462 9 O -0.595 6.595 10 N -0.602 5.602 11 C 0.095 3.905 12 C -0.106 4.106 13 C -0.099 4.099 14 H 0.115 0.885 15 C 0.136 3.864 16 N -0.624 5.624 17 C -0.241 4.241 18 H 0.091 0.909 19 C -0.073 4.073 20 N -0.956 5.956 21 Si 0.982 3.018 22 H -0.256 1.256 23 H -0.296 1.296 24 H -0.293 1.293 25 C 0.198 3.802 26 C 0.115 3.885 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.032 0.968 41 H 0.242 0.758 42 H -0.004 1.004 43 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -21.021 0.164 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C -0.137 4.137 4 H 0.100 0.900 5 C -0.182 4.182 6 C -0.201 4.201 7 H 0.178 0.822 8 C 0.329 3.671 9 O -0.476 6.476 10 N -0.334 5.334 11 C -0.026 4.026 12 C -0.144 4.144 13 C -0.118 4.118 14 H 0.134 0.866 15 C 0.011 3.989 16 N -0.350 5.350 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.266 4.266 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.180 1.180 23 H -0.223 1.223 24 H -0.220 1.220 25 C 0.072 3.928 26 C 0.010 3.990 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.014 0.986 43 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 1.750 -20.488 0.346 20.565 hybrid contribution -0.551 2.016 -0.339 2.117 sum 1.199 -18.472 0.007 18.511 Atomic orbital electron populations 1.21761 0.95112 1.02447 1.01534 1.21143 0.96283 0.91151 1.03486 1.22517 0.90648 0.99932 1.00588 0.90019 1.23136 1.01740 1.02313 0.91017 1.22327 0.98254 0.97751 1.01770 0.82238 1.20210 0.80703 0.86402 0.79800 1.90681 1.54568 1.51022 1.51345 1.48437 1.05375 1.26333 1.53249 1.22640 0.86274 0.96025 0.97662 1.22814 0.98255 0.92463 1.00825 1.23154 0.91665 0.97786 0.99240 0.86649 1.21599 0.92198 0.89863 0.95238 1.44534 1.12574 1.22896 1.55035 1.19572 0.99605 0.97136 1.20685 0.89097 1.25803 0.95946 1.02604 1.02214 1.70324 1.05322 1.37219 1.47629 0.84961 0.77937 0.78635 0.77527 1.17989 1.22308 1.21985 1.20882 0.88466 0.91368 0.92121 1.22529 0.95106 0.86649 0.94741 0.91002 0.92901 0.90721 0.93713 0.89427 0.90525 0.84147 0.91914 0.86933 0.92173 0.88232 0.86794 0.93605 0.95018 0.94855 0.98552 0.98442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.87 71.98 0.71 -1.76 16 2 C -0.08 -1.39 6.22 30.59 0.19 -1.20 16 3 C -0.12 -3.02 5.25 -10.77 -0.06 -3.08 16 4 H 0.08 2.69 7.60 -2.38 -0.02 2.67 16 5 C -0.14 -3.76 9.88 30.60 0.30 -3.45 16 6 C -0.18 -4.88 5.26 -11.51 -0.06 -4.94 16 7 H 0.16 2.91 7.05 -2.39 -0.02 2.89 16 8 C 0.54 21.18 7.21 87.66 0.63 21.81 16 9 O -0.60 -30.18 16.24 -3.02 -0.05 -30.23 16 10 N -0.60 -21.68 2.98 -784.23 -2.34 -24.02 16 11 C 0.10 2.30 6.24 86.84 0.54 2.84 16 12 C -0.11 -2.12 6.34 31.96 0.20 -1.92 16 13 C -0.10 -3.09 4.28 -8.92 -0.04 -3.13 16 14 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 15 C 0.14 5.30 6.46 86.69 0.56 5.86 16 16 N -0.62 -33.57 3.38 -696.17 -2.35 -35.93 16 17 C -0.24 -14.07 10.25 84.03 0.86 -13.21 16 18 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 19 C -0.07 -4.44 5.48 84.86 0.47 -3.98 16 20 N -0.96 -63.41 10.24 21.65 0.22 -63.19 16 21 Si 0.98 48.19 29.55 68.60 2.03 50.22 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 25 C 0.20 11.05 4.94 86.86 0.43 11.48 16 26 C 0.11 4.74 3.66 46.25 0.17 4.91 16 27 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 1.10 7.87 -2.39 -0.02 1.08 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.14 2.51 8.03 -2.39 -0.02 2.49 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 1.79 6.98 -2.39 -0.02 1.77 16 36 H 0.06 1.61 7.24 -2.39 -0.02 1.59 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.69 8.07 -2.39 -0.02 1.67 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.18 6.59 -2.39 -0.02 1.16 16 41 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.00 -0.24 7.33 -2.39 -0.02 -0.26 16 43 H 0.00 -0.17 6.80 -2.39 -0.02 -0.19 16 Total: -1.00 -84.66 338.02 3.39 -81.27 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.98 Total: 11.64 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.91 Total: 10.23 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -4.47 Total: -123.13 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.23 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -84.66 3.39 -81.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076264691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.462 kcal (2) G-P(sol) polarization free energy of solvation -84.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds