Wall clock time and date at job start Tue Mar 31 2020 00:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08998 * 115.55206 * 29.33161 * 3 2 1 5 5 C 1.53003 * 117.51455 * 243.63098 * 3 2 1 6 6 C 1.53000 * 117.49734 * 175.00268 * 3 2 1 7 7 H 1.08999 * 117.49580 * 359.97438 * 6 3 2 8 8 C 1.50699 * 117.49563 * 215.00385 * 6 3 2 9 9 O 1.21273 * 120.00130 * 359.97438 * 8 6 3 10 10 N 1.34781 * 119.99436 * 179.97438 * 8 6 3 11 11 C 1.47807 * 135.01553 * 359.97438 * 10 8 6 12 12 C 1.54654 * 85.79172 * 153.78985 * 11 10 8 13 13 H 1.09001 * 114.44110 * 140.42212 * 12 11 10 14 14 C 1.53010 * 110.83700 * 270.23555 * 12 11 10 15 15 C 1.53096 * 109.45115 * 143.88972 * 14 12 11 16 16 N 1.46624 * 108.00761 * 301.02191 * 15 14 12 17 17 C 1.36931 * 119.89286 * 237.30857 * 16 15 14 18 18 H 1.08007 * 119.99977 * 25.33015 * 17 16 15 19 19 C 1.38806 * 120.00107 * 205.06040 * 17 16 15 20 20 N 1.31624 * 120.00054 * 16.01027 * 19 17 16 21 21 Si 1.86805 * 120.00011 * 196.01599 * 19 17 16 22 22 H 1.48490 * 109.47023 * 59.99747 * 21 19 17 23 23 H 1.48508 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46975 * 299.99316 * 21 19 17 25 25 C 1.45684 * 120.21487 * 57.57951 * 16 15 14 26 26 C 1.46818 * 135.00849 * 179.97438 * 10 8 6 27 27 H 1.08993 * 111.56832 * 94.49903 * 26 10 8 28 28 H 1.09003 * 109.47259 * 59.99986 * 1 2 3 29 29 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46865 * 299.99990 * 1 2 3 31 31 H 1.09000 * 109.46865 * 240.00010 * 2 1 3 32 32 H 1.08997 * 109.46853 * 120.00558 * 2 1 3 33 33 H 1.09000 * 117.49906 * 145.03180 * 5 3 2 34 34 H 1.08994 * 117.50267 * 0.02562 * 5 3 2 35 35 H 1.08997 * 113.82110 * 39.57271 * 11 10 8 36 36 H 1.09004 * 113.93024 * 268.02099 * 11 10 8 37 37 H 1.09003 * 109.47489 * 23.89048 * 14 12 11 38 38 H 1.09007 * 109.47392 * 263.88397 * 14 12 11 39 39 H 1.08999 * 109.75578 * 181.39554 * 15 14 12 40 40 H 1.08994 * 109.79893 * 60.67255 * 15 14 12 41 41 H 0.97002 * 119.99778 * 180.02562 * 20 19 17 42 42 H 1.09005 * 108.71350 * 81.49275 * 25 16 15 43 43 H 1.09004 * 108.71143 * 199.50995 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8439 1.9080 -1.2158 6 6 3.5502 1.6579 0.1182 7 1 4.1803 0.7719 0.1964 8 6 4.0229 2.8617 0.8918 9 8 3.2159 3.6163 1.3919 10 7 5.3425 3.0995 1.0280 11 6 6.5782 2.4265 0.5755 12 6 7.2347 3.8242 0.6600 13 1 8.2508 3.8222 1.0545 14 6 7.0996 4.5702 -0.6691 15 6 6.8846 6.0614 -0.3972 16 7 5.6706 6.2041 0.4126 17 6 4.6364 6.9799 -0.0387 18 1 4.5097 7.1478 -1.0981 19 6 3.7477 7.5459 0.8649 20 7 4.0595 7.6105 2.1420 21 14 2.1091 8.2158 0.2685 22 1 1.3289 7.1230 -0.3655 23 1 1.3486 8.7622 1.4211 24 1 2.3471 9.2944 -0.7240 25 6 5.5635 5.5279 1.6985 26 6 6.1484 4.1347 1.6872 27 1 6.4463 3.8318 2.6909 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7212 2.9433 -1.5339 34 1 3.0092 1.1868 -2.0161 35 1 6.5174 2.0292 -0.4376 36 1 6.9781 1.7083 1.2915 37 1 6.2477 4.1751 -1.2226 38 1 8.0084 4.4351 -1.2557 39 1 6.7629 6.5941 -1.3404 40 1 7.7392 6.4646 0.1459 41 1 3.4383 8.0057 2.7735 42 1 6.0819 6.1226 2.4507 43 1 4.5105 5.4628 1.9727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084673776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:09 Heat of formation + Delta-G solvation = 44.811757 kcal Electronic energy + Delta-G solvation = -23000.139515 eV Core-core repulsion = 19854.871540 eV Total energy + Delta-G solvation = -3145.267974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36408 -38.55171 -36.28325 -35.12392 -32.12930 -31.97691 -30.10647 -29.02483 -26.89397 -24.37835 -23.82207 -23.61385 -22.31875 -20.98813 -20.39172 -19.29002 -17.70663 -17.04413 -15.97124 -15.61704 -15.44403 -14.63157 -14.53696 -14.22095 -13.77779 -13.51702 -13.35301 -13.17796 -12.78791 -12.42243 -12.34480 -12.13880 -12.03424 -11.81052 -11.44070 -11.32240 -11.08568 -10.96897 -10.61909 -10.60925 -10.43883 -10.16930 -10.10388 -9.90943 -9.83449 -9.76578 -9.56605 -8.82921 -8.25541 -8.01931 -6.56384 -5.62630 -3.03851 3.07673 3.31775 3.49302 3.55621 3.58676 4.06534 4.57670 4.63468 4.77455 4.90449 4.93824 5.12057 5.23432 5.28554 5.32374 5.45621 5.46491 5.52413 5.60434 5.66965 5.72501 5.74835 5.81986 5.87660 5.95067 6.02022 6.10821 6.15882 6.17613 6.28543 6.38999 6.42405 6.48074 6.57451 6.64210 6.82211 7.03687 7.54370 7.80326 7.97419 8.40220 8.60555 8.88932 9.38625 10.03292 10.51693 11.45667 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.007357 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.535280 B = 3804.943901 C = 5204.588761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.123 4.123 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.180 4.180 7 H 0.113 0.887 8 C 0.561 3.439 9 O -0.520 6.520 10 N -0.628 5.628 11 C 0.096 3.904 12 C -0.110 4.110 13 H 0.085 0.915 14 C -0.116 4.116 15 C 0.147 3.853 16 N -0.584 5.584 17 C -0.254 4.254 18 H 0.062 0.938 19 C 0.011 3.989 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.166 3.834 26 C 0.124 3.876 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.252 0.748 42 H 0.031 0.969 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.256 -15.822 -4.699 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.142 4.142 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.201 4.201 7 H 0.131 0.869 8 C 0.350 3.650 9 O -0.395 6.395 10 N -0.364 5.364 11 C -0.028 4.028 12 C -0.129 4.129 13 H 0.103 0.897 14 C -0.156 4.156 15 C 0.021 3.979 16 N -0.307 5.307 17 C -0.383 4.383 18 H 0.079 0.921 19 C -0.187 4.187 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.040 3.960 26 C 0.020 3.980 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.473 -15.360 -4.289 16.138 hybrid contribution -0.698 0.126 -0.156 0.727 sum 1.775 -15.233 -4.445 15.968 Atomic orbital electron populations 1.21741 0.95330 1.01284 1.02303 1.21123 0.96145 0.93901 1.01723 1.22464 0.91870 0.98285 1.01555 0.86449 1.23061 1.02155 1.03237 0.90160 1.22240 0.96828 0.98925 1.02150 0.86914 1.19071 0.80498 0.85123 0.80320 1.90758 1.52497 1.47757 1.48502 1.49736 1.03046 1.28285 1.55307 1.23519 0.83496 0.96211 0.99524 1.22858 0.97850 0.94339 0.97855 0.89680 1.21854 1.00251 0.99160 0.94315 1.20741 0.89817 0.92039 0.95351 1.43470 1.13493 1.53810 1.19915 1.19025 1.04182 1.23862 0.91266 0.92061 1.24910 0.99612 0.98508 0.95695 1.70007 1.35215 1.47771 1.01720 0.86399 0.84643 0.78424 0.77452 1.21070 1.21697 1.21167 1.20171 1.03034 0.85187 0.87595 1.22729 0.87461 0.92946 0.94873 0.91183 0.92507 0.92866 0.92451 0.91932 0.91698 0.88032 0.88358 0.90753 0.90708 0.92058 0.92796 0.92613 0.96265 0.93752 0.95153 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.87 37.16 0.37 -1.13 16 2 C -0.09 -0.99 6.22 -26.73 -0.17 -1.16 16 3 C -0.12 -1.77 5.25 -90.62 -0.48 -2.24 16 4 H 0.12 2.00 7.60 -51.93 -0.39 1.61 16 5 C -0.15 -2.11 9.88 -26.73 -0.26 -2.37 16 6 C -0.18 -2.77 5.69 -91.77 -0.52 -3.29 16 7 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 8 C 0.56 11.47 7.78 -10.98 -0.09 11.38 16 9 O -0.52 -13.33 15.40 5.56 0.09 -13.25 16 10 N -0.63 -11.71 3.35 -173.79 -0.58 -12.29 16 11 C 0.10 1.30 7.97 -3.00 -0.02 1.28 16 12 C -0.11 -1.71 4.39 -89.96 -0.40 -2.11 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.12 -1.96 5.66 -26.68 -0.15 -2.11 16 15 C 0.15 3.09 6.47 -3.92 -0.03 3.06 16 16 N -0.58 -15.19 3.02 -174.87 -0.53 -15.72 16 17 C -0.25 -7.37 9.54 -15.06 -0.14 -7.51 16 18 H 0.06 1.75 7.85 -52.48 -0.41 1.34 16 19 C 0.01 0.34 4.91 -17.43 -0.09 0.26 16 20 N -0.90 -27.89 11.02 55.49 0.61 -27.28 16 21 Si 0.90 23.65 29.58 -169.99 -5.03 18.63 16 22 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.17 4.23 4.64 -5.44 -0.03 4.21 16 26 C 0.12 2.44 4.23 -69.41 -0.29 2.14 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 38 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.06 1.15 7.88 -51.93 -0.41 0.74 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 43 H 0.10 3.08 4.91 -51.93 -0.26 2.83 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -34.27 341.84 -9.89 -44.16 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.31 Total: 0.19 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.29 Total: 0.42 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.50 Total: -55.30 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.03 Total: 18.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.27 -9.89 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084673776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.969 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds