Wall clock time and date at job start Tue Mar 31 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08998 * 115.55206 * 29.33161 * 3 2 1 5 5 C 1.53003 * 117.51455 * 243.63098 * 3 2 1 6 6 C 1.53000 * 117.49734 * 175.00268 * 3 2 1 7 7 H 1.08999 * 117.49580 * 359.97438 * 6 3 2 8 8 C 1.50699 * 117.49563 * 215.00385 * 6 3 2 9 9 O 1.21273 * 120.00130 * 359.97438 * 8 6 3 10 10 N 1.34781 * 119.99436 * 179.97438 * 8 6 3 11 11 C 1.47807 * 135.01553 * 359.97438 * 10 8 6 12 12 C 1.54654 * 85.79172 * 153.78985 * 11 10 8 13 13 H 1.09001 * 114.44110 * 140.42212 * 12 11 10 14 14 C 1.53010 * 110.83700 * 270.23555 * 12 11 10 15 15 C 1.53096 * 109.45115 * 143.88972 * 14 12 11 16 16 N 1.46624 * 108.00761 * 301.02191 * 15 14 12 17 17 C 1.36931 * 119.89286 * 237.30857 * 16 15 14 18 18 H 1.08007 * 119.99977 * 25.33015 * 17 16 15 19 19 C 1.38806 * 120.00107 * 205.06040 * 17 16 15 20 20 N 1.31624 * 120.00054 * 16.01027 * 19 17 16 21 21 Si 1.86805 * 120.00011 * 196.01599 * 19 17 16 22 22 H 1.48490 * 109.47023 * 59.99747 * 21 19 17 23 23 H 1.48508 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46975 * 299.99316 * 21 19 17 25 25 C 1.45684 * 120.21487 * 57.57951 * 16 15 14 26 26 C 1.46818 * 135.00849 * 179.97438 * 10 8 6 27 27 H 1.08993 * 111.56832 * 94.49903 * 26 10 8 28 28 H 1.09003 * 109.47259 * 59.99986 * 1 2 3 29 29 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46865 * 299.99990 * 1 2 3 31 31 H 1.09000 * 109.46865 * 240.00010 * 2 1 3 32 32 H 1.08997 * 109.46853 * 120.00558 * 2 1 3 33 33 H 1.09000 * 117.49906 * 145.03180 * 5 3 2 34 34 H 1.08994 * 117.50267 * 0.02562 * 5 3 2 35 35 H 1.08997 * 113.82110 * 39.57271 * 11 10 8 36 36 H 1.09004 * 113.93024 * 268.02099 * 11 10 8 37 37 H 1.09003 * 109.47489 * 23.89048 * 14 12 11 38 38 H 1.09007 * 109.47392 * 263.88397 * 14 12 11 39 39 H 1.08999 * 109.75578 * 181.39554 * 15 14 12 40 40 H 1.08994 * 109.79893 * 60.67255 * 15 14 12 41 41 H 0.97002 * 119.99778 * 180.02562 * 20 19 17 42 42 H 1.09005 * 108.71350 * 81.49275 * 25 16 15 43 43 H 1.09004 * 108.71143 * 199.50995 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8439 1.9080 -1.2158 6 6 3.5502 1.6579 0.1182 7 1 4.1803 0.7719 0.1964 8 6 4.0229 2.8617 0.8918 9 8 3.2159 3.6163 1.3919 10 7 5.3425 3.0995 1.0280 11 6 6.5782 2.4265 0.5755 12 6 7.2347 3.8242 0.6600 13 1 8.2508 3.8222 1.0545 14 6 7.0996 4.5702 -0.6691 15 6 6.8846 6.0614 -0.3972 16 7 5.6706 6.2041 0.4126 17 6 4.6364 6.9799 -0.0387 18 1 4.5097 7.1478 -1.0981 19 6 3.7477 7.5459 0.8649 20 7 4.0595 7.6105 2.1420 21 14 2.1091 8.2158 0.2685 22 1 1.3289 7.1230 -0.3655 23 1 1.3486 8.7622 1.4211 24 1 2.3471 9.2944 -0.7240 25 6 5.5635 5.5279 1.6985 26 6 6.1484 4.1347 1.6872 27 1 6.4463 3.8318 2.6909 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.7212 2.9433 -1.5339 34 1 3.0092 1.1868 -2.0161 35 1 6.5174 2.0292 -0.4376 36 1 6.9781 1.7083 1.2915 37 1 6.2477 4.1751 -1.2226 38 1 8.0084 4.4351 -1.2557 39 1 6.7629 6.5941 -1.3404 40 1 7.7392 6.4646 0.1459 41 1 3.4383 8.0057 2.7735 42 1 6.0819 6.1226 2.4507 43 1 4.5105 5.4628 1.9727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084673776.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:08 Heat of formation + Delta-G solvation = 22.529974 kcal Electronic energy + Delta-G solvation = -23001.105725 eV Core-core repulsion = 19854.871540 eV Total energy + Delta-G solvation = -3146.234185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80799 -39.91335 -37.68650 -37.01232 -33.99516 -32.95058 -31.94408 -30.64328 -28.62216 -25.75642 -25.61381 -24.67360 -23.78172 -22.62592 -21.46661 -20.69291 -19.48460 -18.58369 -17.63090 -17.28802 -16.99737 -16.20542 -15.80792 -15.57785 -15.46207 -15.11629 -14.85463 -14.62134 -14.35617 -14.01277 -13.69838 -13.37107 -13.32342 -13.16731 -13.02445 -12.77699 -12.68182 -12.39729 -12.25837 -12.19647 -12.01579 -11.95437 -11.74047 -11.50024 -11.25574 -11.16543 -10.95803 -10.66134 -10.28490 -9.49403 -8.70660 -7.88441 -5.31293 1.31316 1.39722 1.42406 1.64763 1.95388 2.45342 2.87320 3.27113 3.43307 3.48385 3.70938 3.75976 3.83672 4.00019 4.06489 4.23840 4.26391 4.44648 4.45453 4.50627 4.56688 4.61775 4.69479 4.72840 4.75350 4.83055 4.91044 4.91953 5.01958 5.06750 5.11493 5.15823 5.21516 5.27609 5.32329 5.42682 5.47354 5.53707 5.70415 5.79471 6.36589 6.97504 7.16078 7.37755 7.93533 8.33106 9.16011 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.007357 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.535280 B = 3804.943901 C = 5204.588761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 C -0.127 4.127 4 H 0.074 0.926 5 C -0.138 4.138 6 C -0.177 4.177 7 H 0.154 0.846 8 C 0.543 3.457 9 O -0.594 6.594 10 N -0.634 5.634 11 C 0.113 3.887 12 C -0.100 4.100 13 H 0.125 0.875 14 C -0.105 4.105 15 C 0.137 3.863 16 N -0.602 5.602 17 C -0.257 4.257 18 H 0.061 0.939 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.954 3.046 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.264 1.264 25 C 0.180 3.820 26 C 0.106 3.894 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.027 0.973 41 H 0.244 0.756 42 H -0.007 1.007 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -19.482 -6.908 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.145 4.145 4 H 0.092 0.908 5 C -0.175 4.175 6 C -0.198 4.198 7 H 0.172 0.828 8 C 0.334 3.666 9 O -0.475 6.475 10 N -0.369 5.369 11 C -0.008 4.008 12 C -0.119 4.119 13 H 0.143 0.857 14 C -0.144 4.144 15 C 0.012 3.988 16 N -0.325 5.325 17 C -0.388 4.388 18 H 0.079 0.921 19 C -0.242 4.242 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.221 1.221 23 H -0.220 1.220 24 H -0.189 1.189 25 C 0.054 3.946 26 C 0.002 3.998 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.011 0.989 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.806 -19.050 -6.547 20.709 hybrid contribution -1.338 1.334 0.527 1.962 sum 3.468 -17.716 -6.020 19.030 Atomic orbital electron populations 1.21760 0.95183 1.02463 1.01422 1.21126 0.96235 0.91135 1.03387 1.22488 0.90981 0.99787 1.01292 0.90766 1.23102 1.01320 1.02306 0.90798 1.22264 0.97736 0.97838 1.01930 0.82798 1.20089 0.80688 0.85851 0.79969 1.90727 1.54599 1.50582 1.51614 1.49969 1.03902 1.28461 1.54535 1.23790 0.79473 0.95424 1.02106 1.22872 0.98423 0.95221 0.95356 0.85666 1.21730 1.01709 0.95319 0.95593 1.21009 0.87806 0.95628 0.94311 1.43721 1.14727 1.53709 1.20374 1.19350 1.05094 1.23077 0.91246 0.92108 1.25628 1.02638 0.99935 0.95971 1.70179 1.35785 1.49376 1.02614 0.85527 0.80981 0.77974 0.77171 1.22089 1.22022 1.18886 1.19755 0.99822 0.88446 0.86603 1.22692 0.89636 0.89838 0.97649 0.89675 0.92794 0.90548 0.94101 0.89168 0.90892 0.91749 0.83970 0.88043 0.86671 0.93861 0.88045 0.92968 0.95506 0.94703 0.98873 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.87 71.98 0.71 -2.09 16 2 C -0.08 -1.54 6.22 30.60 0.19 -1.35 16 3 C -0.13 -3.58 5.25 -10.79 -0.06 -3.63 16 4 H 0.07 2.75 7.60 -2.39 -0.02 2.73 16 5 C -0.14 -3.69 9.88 30.60 0.30 -3.39 16 6 C -0.18 -5.11 5.69 -11.54 -0.07 -5.17 16 7 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 8 C 0.54 22.52 7.78 87.66 0.68 23.20 16 9 O -0.59 -32.81 15.40 -3.01 -0.05 -32.86 16 10 N -0.63 -22.77 3.35 -822.15 -2.75 -25.52 16 11 C 0.11 2.46 7.97 86.34 0.69 3.15 16 12 C -0.10 -2.69 4.39 -10.31 -0.05 -2.74 16 13 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 14 C -0.10 -3.15 5.66 30.63 0.17 -2.98 16 15 C 0.14 5.64 6.47 86.39 0.56 6.20 16 16 N -0.60 -32.32 3.02 -707.16 -2.13 -34.45 16 17 C -0.26 -15.57 9.54 84.03 0.80 -14.76 16 18 H 0.06 3.59 7.85 -2.91 -0.02 3.57 16 19 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 20 N -0.93 -61.53 11.02 21.65 0.24 -61.29 16 21 Si 0.95 51.12 29.58 68.60 2.03 53.15 16 22 H -0.29 -16.01 7.11 99.48 0.71 -15.30 16 23 H -0.29 -15.74 7.11 99.48 0.71 -15.03 16 24 H -0.26 -13.06 7.11 99.48 0.71 -12.35 16 25 C 0.18 9.66 4.64 85.92 0.40 10.06 16 26 C 0.11 4.13 4.23 43.86 0.19 4.32 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.26 7.88 -2.39 -0.02 1.24 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.14 2.54 8.03 -2.39 -0.02 2.52 16 35 H 0.10 1.77 7.97 -2.39 -0.02 1.75 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.47 7.69 -2.39 -0.02 1.45 16 38 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.05 2.13 7.88 -2.39 -0.02 2.11 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 42 H -0.01 -0.38 7.97 -2.38 -0.02 -0.40 16 43 H 0.05 3.17 4.91 -2.38 -0.01 3.16 16 Total: -1.00 -85.57 341.84 3.25 -82.32 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.97 Total: 10.33 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.94 Total: 8.31 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.65 Total: -121.26 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.86 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.03 Total: 53.15 kcal Total: -85.57 3.25 -82.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084673776.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.849 kcal (2) G-P(sol) polarization free energy of solvation -85.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds