Wall clock time and date at job start Tue Mar 31 2020 00:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 H 1.08994 * 110.00242 * 54.07558 * 3 2 1 5 5 C 1.54327 * 109.87968 * 292.97653 * 3 2 1 6 6 H 1.08999 * 110.72369 * 336.75879 * 5 3 2 7 7 N 1.46500 * 110.71876 * 99.85346 * 5 3 2 8 8 C 1.34774 * 119.99942 * 205.00007 * 7 5 3 9 9 O 1.21279 * 120.00020 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00002 * 179.97438 * 8 7 5 11 11 C 1.54636 * 111.04028 * 295.33528 * 10 8 7 12 12 C 1.51163 * 104.69299 * 217.36055 * 11 10 8 13 13 C 1.30526 * 111.12385 * 16.38387 * 12 11 10 14 14 C 1.51106 * 111.09959 * 0.02661 * 13 12 11 15 15 C 1.55151 * 102.94295 * 218.39247 * 5 3 2 16 16 C 1.54908 * 101.58453 * 35.50266 * 15 5 3 17 17 N 1.47019 * 109.88030 * 175.17323 * 3 2 1 18 18 C 1.36932 * 125.65000 * 298.37413 * 17 3 2 19 19 H 1.08006 * 120.00003 * 347.96924 * 18 17 3 20 20 C 1.38817 * 120.00592 * 167.97059 * 18 17 3 21 21 N 1.31621 * 119.99584 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00426 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47055 * 120.00286 * 22 20 18 25 25 H 1.48502 * 109.47182 * 240.00337 * 22 20 18 26 26 H 1.08996 * 109.47445 * 305.47378 * 1 2 3 27 27 H 1.08997 * 109.46994 * 65.47656 * 1 2 3 28 28 H 1.08998 * 109.46697 * 185.46728 * 1 2 3 29 29 H 1.08990 * 109.47423 * 239.99660 * 2 1 3 30 30 H 1.08997 * 109.46932 * 119.99156 * 2 1 3 31 31 H 0.97003 * 119.99967 * 24.99663 * 7 5 3 32 32 H 1.09005 * 110.91395 * 59.29884 * 10 8 7 33 33 H 1.09002 * 110.38041 * 336.14440 * 11 10 8 34 34 H 1.08999 * 110.39063 * 98.51695 * 11 10 8 35 35 H 1.08006 * 124.43034 * 196.39928 * 12 11 10 36 36 H 1.07997 * 124.44969 * 180.02562 * 13 12 11 37 37 H 1.08999 * 110.38161 * 224.75356 * 14 13 12 38 38 H 1.09001 * 110.37844 * 102.38141 * 14 13 12 39 39 H 1.08999 * 111.00703 * 277.43002 * 15 5 3 40 40 H 1.09006 * 111.00900 * 153.57845 * 15 5 3 41 41 H 1.08996 * 110.37148 * 204.14771 * 16 15 5 42 42 H 1.09002 * 110.36479 * 81.82312 * 16 15 5 43 43 H 0.97001 * 120.00421 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5976 1.9943 0.8294 5 6 1.6807 2.1261 -1.3362 6 1 1.5293 1.3844 -2.1204 7 7 0.4910 2.9675 -1.1845 8 6 -0.2810 3.2421 -2.2545 9 8 0.0094 2.7931 -3.3431 10 6 -1.5052 4.1071 -2.0984 11 6 -2.5555 3.4243 -1.1919 12 6 -3.8871 3.7813 -1.8119 13 6 -3.7359 4.2157 -3.0334 14 6 -2.2786 4.2204 -3.4326 15 6 2.9347 2.9903 -1.6326 16 6 4.0702 2.0872 -1.0897 17 7 3.5055 1.4548 0.1163 18 6 4.2266 0.9603 1.1702 19 1 3.7259 0.6931 2.0891 20 6 5.6011 0.8026 1.0576 21 7 6.2114 1.1287 -0.0620 22 14 6.5847 0.1274 2.4949 23 1 5.6700 -0.1606 3.6289 24 1 7.2694 -1.1239 2.0819 25 1 7.5964 1.1293 2.9166 26 1 -0.3634 0.5963 0.8369 27 1 -0.3633 0.4265 -0.9349 28 1 -0.3633 -1.0230 0.0979 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.2588 3.3268 -0.3139 32 1 -1.2391 5.0924 -1.7154 33 1 -2.4134 2.3435 -1.1938 34 1 -2.4918 3.8147 -0.1762 35 1 -4.8389 3.6892 -1.3096 36 1 -4.5460 4.5303 -3.6745 37 1 -2.0269 5.1520 -3.9395 38 1 -2.0577 3.3667 -4.0733 39 1 2.8947 3.9355 -1.0912 40 1 3.0483 3.1597 -2.7034 41 1 4.9417 2.6882 -0.8303 42 1 4.3367 1.3291 -1.8261 43 1 7.1720 1.0189 -0.1407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087527527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:42 Heat of formation + Delta-G solvation = -4.823760 kcal Electronic energy + Delta-G solvation = -22444.918331 eV Core-core repulsion = 19297.497999 eV Total energy + Delta-G solvation = -3147.420332 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.21924 -38.35567 -37.11185 -34.01325 -32.76339 -31.74998 -29.90086 -28.76954 -28.28074 -26.46666 -24.48430 -22.81485 -21.69270 -20.27745 -20.08079 -19.27865 -18.92463 -17.10579 -16.85976 -16.32568 -15.83402 -14.83577 -14.58134 -14.22816 -13.97672 -13.71731 -13.37821 -12.93595 -12.75515 -12.44203 -12.32716 -12.04083 -11.94971 -11.81350 -11.65151 -11.42882 -11.26374 -11.13525 -10.89756 -10.83493 -10.62468 -10.44343 -10.26122 -10.05852 -9.74121 -9.64764 -9.52142 -9.07449 -8.64458 -8.55018 -6.83122 -5.74647 -3.11165 2.06522 2.80497 3.35669 3.39117 3.44583 3.46306 4.33311 4.45316 4.48324 4.83061 5.03603 5.10058 5.29468 5.35770 5.43976 5.48498 5.53071 5.54866 5.61192 5.71723 5.75612 5.80974 5.81251 5.86949 6.04302 6.05838 6.23785 6.31421 6.33330 6.41518 6.46598 6.57673 6.68003 6.68495 6.75080 6.94814 7.15410 7.53007 7.59445 7.76421 7.79846 8.26089 8.44667 9.17791 9.78923 10.45937 11.36354 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034609 B = 0.004058 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.846208 B = 6898.014779 C = 7321.557494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.093 0.907 7 N -0.712 5.712 8 C 0.521 3.479 9 O -0.542 6.542 10 C -0.117 4.117 11 C -0.090 4.090 12 C -0.171 4.171 13 C -0.162 4.162 14 C -0.087 4.087 15 C -0.156 4.156 16 C 0.172 3.828 17 N -0.595 5.595 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.025 0.975 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.589 6.111 -2.250 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.032 3.968 6 H 0.111 0.889 7 N -0.362 5.362 8 C 0.307 3.693 9 O -0.420 6.420 10 C -0.139 4.139 11 C -0.127 4.127 12 C -0.189 4.189 13 C -0.180 4.180 14 C -0.125 4.125 15 C -0.196 4.196 16 C 0.047 3.953 17 N -0.320 5.320 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.107 5.730 -2.975 18.285 hybrid contribution 0.425 -0.233 1.161 1.258 sum -16.682 5.497 -1.814 17.658 Atomic orbital electron populations 1.21763 0.97274 1.00471 1.00866 1.22017 0.93607 0.99208 1.02351 1.21073 0.87140 0.93381 0.93110 0.94767 1.22112 0.83396 0.92558 0.98733 0.88893 1.46061 1.27136 1.51988 1.10976 1.20274 0.83836 0.80836 0.84379 1.90683 1.72459 1.52784 1.26031 1.22186 0.93469 0.99729 0.98467 1.21337 0.91494 1.01107 0.98784 1.23222 0.98112 1.00760 0.96775 1.23329 0.97543 1.00240 0.96915 1.21277 0.91192 1.03578 0.96408 1.23422 0.96775 0.99106 1.00306 1.21487 0.93226 0.93170 0.87425 1.44473 0.98533 1.69184 1.19767 1.19003 0.89367 1.35855 0.91217 0.90592 1.24874 0.96886 1.01195 0.97240 1.69937 1.08743 1.52955 1.24772 0.86071 0.80071 0.78401 0.81364 1.20473 1.21717 1.21766 0.93423 0.93370 0.93723 0.92454 0.91700 0.76854 0.87807 0.90081 0.90381 0.85717 0.85731 0.90840 0.88742 0.92078 0.91992 0.90257 0.95690 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.63 37.16 0.36 -1.78 16 2 C -0.13 -2.44 5.43 -26.73 -0.15 -2.59 16 3 C 0.16 3.16 2.92 -66.95 -0.20 2.97 16 4 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 5 C 0.14 2.44 2.08 -66.10 -0.14 2.31 16 6 H 0.09 1.83 7.18 -51.93 -0.37 1.46 16 7 N -0.71 -10.06 4.93 -52.03 -0.26 -10.31 16 8 C 0.52 7.48 7.06 -10.99 -0.08 7.40 16 9 O -0.54 -9.93 15.18 5.56 0.08 -9.84 16 10 C -0.12 -1.25 3.54 -90.05 -0.32 -1.57 16 11 C -0.09 -0.82 6.37 -26.80 -0.17 -0.99 16 12 C -0.17 -1.47 10.78 -35.67 -0.38 -1.85 16 13 C -0.16 -1.45 10.78 -35.69 -0.38 -1.84 16 14 C -0.09 -0.93 6.16 -26.83 -0.17 -1.09 16 15 C -0.16 -3.06 6.77 -24.59 -0.17 -3.22 16 16 C 0.17 4.16 5.46 -2.53 -0.01 4.14 16 17 N -0.59 -14.62 3.13 -162.57 -0.51 -15.13 16 18 C -0.23 -6.09 9.73 -15.06 -0.15 -6.23 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 21 N -0.92 -26.53 10.47 55.49 0.58 -25.95 16 22 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.71 7.46 -51.93 -0.39 0.32 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 30 H 0.06 1.29 7.85 -51.93 -0.41 0.88 16 31 H 0.40 4.69 8.37 -40.82 -0.34 4.34 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.20 7.01 -51.93 -0.36 0.84 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 2.13 6.74 -51.93 -0.35 1.78 16 42 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -30.62 342.35 -9.23 -39.85 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.22 Total: 4.10 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.04 Total: -4.59 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.18 Total: -51.39 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.62 -9.23 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087527527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.028 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds