Wall clock time and date at job start Tue Mar 31 2020 00:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46644 * 2 1 4 4 H 1.08994 * 110.00242 * 54.07558 * 3 2 1 5 5 C 1.54327 * 109.87968 * 292.97653 * 3 2 1 6 6 H 1.08999 * 110.72369 * 336.75879 * 5 3 2 7 7 N 1.46500 * 110.71876 * 99.85346 * 5 3 2 8 8 C 1.34774 * 119.99942 * 205.00007 * 7 5 3 9 9 O 1.21279 * 120.00020 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00002 * 179.97438 * 8 7 5 11 11 C 1.54636 * 111.04028 * 295.33528 * 10 8 7 12 12 C 1.51163 * 104.69299 * 217.36055 * 11 10 8 13 13 C 1.30526 * 111.12385 * 16.38387 * 12 11 10 14 14 C 1.51106 * 111.09959 * 0.02661 * 13 12 11 15 15 C 1.55151 * 102.94295 * 218.39247 * 5 3 2 16 16 C 1.54908 * 101.58453 * 35.50266 * 15 5 3 17 17 N 1.47019 * 109.88030 * 175.17323 * 3 2 1 18 18 C 1.36932 * 125.65000 * 298.37413 * 17 3 2 19 19 H 1.08006 * 120.00003 * 347.96924 * 18 17 3 20 20 C 1.38817 * 120.00592 * 167.97059 * 18 17 3 21 21 N 1.31621 * 119.99584 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00426 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47055 * 120.00286 * 22 20 18 25 25 H 1.48502 * 109.47182 * 240.00337 * 22 20 18 26 26 H 1.08996 * 109.47445 * 305.47378 * 1 2 3 27 27 H 1.08997 * 109.46994 * 65.47656 * 1 2 3 28 28 H 1.08998 * 109.46697 * 185.46728 * 1 2 3 29 29 H 1.08990 * 109.47423 * 239.99660 * 2 1 3 30 30 H 1.08997 * 109.46932 * 119.99156 * 2 1 3 31 31 H 0.97003 * 119.99967 * 24.99663 * 7 5 3 32 32 H 1.09005 * 110.91395 * 59.29884 * 10 8 7 33 33 H 1.09002 * 110.38041 * 336.14440 * 11 10 8 34 34 H 1.08999 * 110.39063 * 98.51695 * 11 10 8 35 35 H 1.08006 * 124.43034 * 196.39928 * 12 11 10 36 36 H 1.07997 * 124.44969 * 180.02562 * 13 12 11 37 37 H 1.08999 * 110.38161 * 224.75356 * 14 13 12 38 38 H 1.09001 * 110.37844 * 102.38141 * 14 13 12 39 39 H 1.08999 * 111.00703 * 277.43002 * 15 5 3 40 40 H 1.09006 * 111.00900 * 153.57845 * 15 5 3 41 41 H 1.08996 * 110.37148 * 204.14771 * 16 15 5 42 42 H 1.09002 * 110.36479 * 81.82312 * 16 15 5 43 43 H 0.97001 * 120.00421 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5976 1.9943 0.8294 5 6 1.6807 2.1261 -1.3362 6 1 1.5293 1.3844 -2.1204 7 7 0.4910 2.9675 -1.1845 8 6 -0.2810 3.2421 -2.2545 9 8 0.0094 2.7931 -3.3431 10 6 -1.5052 4.1071 -2.0984 11 6 -2.5555 3.4243 -1.1919 12 6 -3.8871 3.7813 -1.8119 13 6 -3.7359 4.2157 -3.0334 14 6 -2.2786 4.2204 -3.4326 15 6 2.9347 2.9903 -1.6326 16 6 4.0702 2.0872 -1.0897 17 7 3.5055 1.4548 0.1163 18 6 4.2266 0.9603 1.1702 19 1 3.7259 0.6931 2.0891 20 6 5.6011 0.8026 1.0576 21 7 6.2114 1.1287 -0.0620 22 14 6.5847 0.1274 2.4949 23 1 5.6700 -0.1606 3.6289 24 1 7.2694 -1.1239 2.0819 25 1 7.5964 1.1293 2.9166 26 1 -0.3634 0.5963 0.8369 27 1 -0.3633 0.4265 -0.9349 28 1 -0.3633 -1.0230 0.0979 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.2588 3.3268 -0.3139 32 1 -1.2391 5.0924 -1.7154 33 1 -2.4134 2.3435 -1.1938 34 1 -2.4918 3.8147 -0.1762 35 1 -4.8389 3.6892 -1.3096 36 1 -4.5460 4.5303 -3.6745 37 1 -2.0269 5.1520 -3.9395 38 1 -2.0577 3.3667 -4.0733 39 1 2.8947 3.9355 -1.0912 40 1 3.0483 3.1597 -2.7034 41 1 4.9417 2.6882 -0.8303 42 1 4.3367 1.3291 -1.8261 43 1 7.1720 1.0189 -0.1407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087527527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:39 Heat of formation + Delta-G solvation = -23.117392 kcal Electronic energy + Delta-G solvation = -22445.711602 eV Core-core repulsion = 19297.497999 eV Total energy + Delta-G solvation = -3148.213603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37702 -39.72464 -38.25876 -35.61945 -34.29336 -33.50090 -31.20728 -30.18968 -29.04303 -27.97408 -26.35898 -24.11066 -22.99072 -22.01742 -21.48130 -20.55541 -19.62321 -18.76949 -18.17630 -17.40161 -17.00094 -16.67802 -15.94914 -15.66965 -15.52207 -15.26809 -14.76575 -14.38195 -13.78270 -13.74442 -13.57544 -13.41969 -13.23679 -12.98666 -12.90459 -12.72383 -12.62962 -12.60744 -12.24730 -12.13547 -12.03429 -11.98454 -11.95178 -11.86952 -11.55974 -11.36162 -10.80039 -10.67926 -9.96605 -9.74677 -8.84932 -7.83913 -5.22187 1.41791 1.47424 1.48429 1.58425 1.66282 2.16063 2.52182 3.34975 3.49594 3.58775 3.71505 3.85235 3.90690 3.99752 4.19768 4.29576 4.36978 4.41397 4.42679 4.60911 4.63499 4.66761 4.75206 4.83228 4.87611 4.88536 4.98864 5.01656 5.11535 5.16888 5.19506 5.24135 5.32028 5.46528 5.51257 5.57298 5.65451 5.69141 5.72563 6.04459 6.23687 6.62096 7.09348 7.30430 7.77264 8.43684 9.26522 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034609 B = 0.004058 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.846208 B = 6898.014779 C = 7321.557494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.159 3.841 4 H 0.054 0.946 5 C 0.155 3.845 6 H 0.073 0.927 7 N -0.699 5.699 8 C 0.522 3.478 9 O -0.585 6.585 10 C -0.111 4.111 11 C -0.090 4.090 12 C -0.166 4.166 13 C -0.171 4.171 14 C -0.092 4.092 15 C -0.142 4.142 16 C 0.179 3.821 17 N -0.614 5.614 18 C -0.230 4.230 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.263 1.263 24 H -0.297 1.297 25 H -0.293 1.293 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.414 0.586 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.047 0.953 42 H -0.011 1.011 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.493 7.027 -0.491 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.072 0.928 5 C 0.049 3.951 6 H 0.091 0.909 7 N -0.350 5.350 8 C 0.310 3.690 9 O -0.465 6.465 10 C -0.132 4.132 11 C -0.127 4.127 12 C -0.183 4.183 13 C -0.189 4.189 14 C -0.129 4.129 15 C -0.181 4.181 16 C 0.054 3.946 17 N -0.339 5.339 18 C -0.359 4.359 19 H 0.102 0.898 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.187 1.187 24 H -0.224 1.224 25 H -0.220 1.220 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.251 0.749 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.007 0.993 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.074 6.661 -1.180 21.183 hybrid contribution 1.295 -0.521 0.575 1.510 sum -18.778 6.140 -0.605 19.766 Atomic orbital electron populations 1.21640 0.93717 1.01931 1.01742 1.21912 0.96630 0.97702 1.00442 1.21261 0.84465 0.94557 0.94471 0.92793 1.21619 0.84215 0.92102 0.97126 0.90859 1.45834 1.25751 1.51345 1.12059 1.20966 0.84373 0.80295 0.83382 1.90678 1.73592 1.54446 1.27772 1.22219 0.91808 0.99984 0.99199 1.21387 0.91120 1.00445 0.99719 1.23432 0.98648 0.99706 0.96557 1.23403 0.96746 1.01210 0.97555 1.21279 0.92773 1.02704 0.96166 1.23232 0.95766 0.98853 1.00294 1.21183 0.93973 0.92522 0.86945 1.44718 1.00775 1.69209 1.19168 1.19372 0.89786 1.34621 0.92077 0.89792 1.25686 0.98122 1.02288 0.99723 1.70153 1.08405 1.54617 1.26795 0.85049 0.78542 0.77062 0.78925 1.18678 1.22405 1.22014 0.91222 0.93405 0.92341 0.94835 0.93194 0.74893 0.85439 0.91050 0.87922 0.83568 0.84125 0.90349 0.91496 0.90670 0.91790 0.93499 0.99256 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.63 71.98 0.69 -2.84 16 2 C -0.13 -4.62 5.43 30.60 0.17 -4.45 16 3 C 0.16 6.11 2.92 45.34 0.13 6.24 16 4 H 0.05 1.90 7.72 -2.39 -0.02 1.89 16 5 C 0.16 5.47 2.08 46.18 0.10 5.56 16 6 H 0.07 2.93 7.18 -2.39 -0.02 2.91 16 7 N -0.70 -18.22 4.93 -436.93 -2.15 -20.37 16 8 C 0.52 14.12 7.06 87.66 0.62 14.74 16 9 O -0.58 -21.32 15.18 -3.03 -0.05 -21.37 16 10 C -0.11 -2.06 3.54 -10.43 -0.04 -2.10 16 11 C -0.09 -1.31 6.37 30.55 0.19 -1.12 16 12 C -0.17 -2.25 10.78 26.28 0.28 -1.96 16 13 C -0.17 -2.61 10.78 26.26 0.28 -2.32 16 14 C -0.09 -1.81 6.16 30.53 0.19 -1.62 16 15 C -0.14 -5.57 6.77 31.98 0.22 -5.35 16 16 C 0.18 9.03 5.46 86.85 0.47 9.51 16 17 N -0.61 -30.59 3.13 -668.25 -2.09 -32.68 16 18 C -0.23 -12.44 9.73 84.04 0.82 -11.62 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -3.66 5.47 84.86 0.46 -3.20 16 21 N -0.95 -57.18 10.47 21.65 0.23 -56.96 16 22 Si 0.98 45.27 29.55 68.60 2.03 47.29 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.29 7.46 -2.39 -0.02 1.27 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 30 H 0.05 1.95 7.85 -2.39 -0.02 1.93 16 31 H 0.41 8.26 8.37 -92.71 -0.78 7.49 16 32 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 1.22 7.88 -2.39 -0.02 1.20 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.70 7.01 -2.39 -0.02 1.68 16 39 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.05 2.64 6.74 -2.39 -0.02 2.62 16 42 H -0.01 -0.60 8.11 -2.39 -0.02 -0.62 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.14 342.35 2.76 -66.38 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.21 Total: 18.24 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 4.59 Total: -0.54 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.02 Total: -110.00 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.14 2.76 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087527527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.264 kcal (2) G-P(sol) polarization free energy of solvation -69.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds