Wall clock time and date at job start Tue Mar 31 2020 00:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 H 1.09004 * 109.87348 * 305.83106 * 3 2 1 5 5 C 1.54323 * 110.01124 * 184.73102 * 3 2 1 6 6 H 1.08997 * 110.72253 * 336.68048 * 5 3 2 7 7 N 1.46501 * 110.72152 * 99.95442 * 5 3 2 8 8 C 1.34770 * 120.00083 * 205.00125 * 7 5 3 9 9 O 1.21615 * 119.99992 * 359.97438 * 8 7 5 10 10 C 1.47101 * 119.99949 * 179.97438 * 8 7 5 11 11 C 1.32999 * 119.99915 * 179.97438 * 10 8 7 12 12 C 1.51400 * 136.31645 * 359.63638 * 11 10 8 13 13 C 1.53386 * 87.51881 * 206.05378 * 12 11 10 14 14 C 1.51409 * 136.31512 * 180.02562 * 11 10 8 15 15 C 1.55159 * 102.93884 * 218.31474 * 5 3 2 16 16 C 1.54682 * 101.67897 * 35.33951 * 15 5 3 17 17 N 1.47020 * 109.88362 * 66.84510 * 3 2 1 18 18 C 1.36939 * 125.64890 * 298.47772 * 17 3 2 19 19 H 1.08001 * 120.00111 * 326.23554 * 18 17 3 20 20 C 1.38814 * 120.00382 * 146.23082 * 18 17 3 21 21 N 1.31621 * 119.99481 * 339.16101 * 20 18 17 22 22 Si 1.86800 * 120.00104 * 159.15659 * 20 18 17 23 23 H 1.48503 * 109.46904 * 270.00470 * 22 20 18 24 24 H 1.48495 * 109.46937 * 30.00279 * 22 20 18 25 25 H 1.48492 * 109.46998 * 150.00519 * 22 20 18 26 26 H 1.08998 * 109.47064 * 171.18856 * 1 2 3 27 27 H 1.08996 * 109.47408 * 291.18621 * 1 2 3 28 28 H 1.09004 * 109.47165 * 51.18826 * 1 2 3 29 29 H 1.08998 * 109.47252 * 240.00194 * 2 1 3 30 30 H 1.09003 * 109.47370 * 119.99837 * 2 1 3 31 31 H 0.97001 * 119.99469 * 24.99959 * 7 5 3 32 32 H 1.08002 * 120.00010 * 0.02562 * 10 8 7 33 33 H 1.09008 * 113.56136 * 320.63358 * 12 11 10 34 34 H 1.08994 * 113.56465 * 91.36910 * 12 11 10 35 35 H 1.08993 * 113.96614 * 220.29520 * 13 12 11 36 36 H 1.09000 * 113.59652 * 88.79304 * 13 12 11 37 37 H 1.09001 * 113.55888 * 268.63203 * 14 11 10 38 38 H 1.09002 * 113.56212 * 39.28657 * 14 11 10 39 39 H 1.09003 * 110.99848 * 153.58005 * 15 5 3 40 40 H 1.09000 * 111.00905 * 277.42305 * 15 5 3 41 41 H 1.09005 * 110.39392 * 204.36340 * 16 15 5 42 42 H 1.09006 * 110.24143 * 82.10719 * 16 15 5 43 43 H 0.96993 * 120.00605 * 353.81065 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9919 -0.8311 5 6 3.5785 1.4587 -0.1196 6 1 4.0021 0.5159 0.2263 7 7 3.9883 1.7380 -1.4981 8 6 5.1898 1.3188 -1.9420 9 8 5.9339 0.7090 -1.1981 10 6 5.6010 1.5988 -3.3263 11 6 6.7869 1.1855 -3.7642 12 6 7.9666 0.4336 -3.1852 13 6 8.8441 1.1453 -4.2226 14 6 7.5627 1.2631 -5.0622 15 6 3.9878 2.6226 0.8213 16 6 2.9394 2.4952 1.9514 17 7 1.6941 2.0952 1.2712 18 6 0.4252 2.3025 1.7425 19 1 -0.3808 2.5046 1.0527 20 6 0.1748 2.2528 3.1070 21 7 1.0097 1.6235 3.9067 22 14 -1.3467 3.0790 3.8082 23 1 -1.0253 4.4829 4.1700 24 1 -2.4299 3.0652 2.7925 25 1 -1.7944 2.3458 5.0193 26 1 -0.3633 -1.0155 -0.1574 27 1 -0.3634 0.3714 0.9582 28 1 -0.3634 0.6441 -0.8008 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3949 2.2247 -2.0913 32 1 4.9403 2.1407 -3.9868 33 1 8.1981 0.7113 -2.1569 34 1 7.9091 -0.6452 -3.3298 35 1 9.6066 0.5076 -4.6697 36 1 9.2352 2.1032 -3.8797 37 1 7.3942 0.4120 -5.7219 38 1 7.4619 2.2205 -5.5734 39 1 4.9979 2.4780 1.2049 40 1 3.8977 3.5840 0.3157 41 1 2.8057 3.4526 2.4552 42 1 3.2448 1.7296 2.6647 43 1 1.7501 1.1191 3.5351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087538871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:50 Heat of formation + Delta-G solvation = 15.025527 kcal Electronic energy + Delta-G solvation = -22012.991975 eV Core-core repulsion = 18866.432372 eV Total energy + Delta-G solvation = -3146.559602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88215 -38.71733 -37.57887 -34.10988 -32.50959 -32.04116 -30.82872 -28.52556 -26.84887 -25.97284 -24.53381 -23.33620 -21.81023 -20.90484 -20.22408 -19.59972 -18.17388 -17.33546 -16.88095 -16.08313 -15.68638 -15.07130 -14.56225 -14.24319 -14.09838 -13.78168 -13.56797 -13.10922 -12.87285 -12.67891 -12.36739 -12.28131 -11.96941 -11.90451 -11.55118 -11.21766 -11.05660 -10.90940 -10.75779 -10.67086 -10.43909 -10.18583 -10.11744 -10.05667 -9.83716 -9.53579 -9.38186 -9.32668 -8.61176 -8.38396 -6.83701 -6.00115 -3.30887 1.31776 3.34093 3.43816 3.49439 3.51294 3.67323 4.22797 4.30583 4.54092 4.57445 4.87223 5.04586 5.20788 5.29463 5.35975 5.39573 5.42863 5.46327 5.49053 5.57474 5.74436 5.82408 5.96932 5.99263 6.02980 6.07606 6.13597 6.20885 6.34166 6.44776 6.49485 6.56362 6.62477 6.73107 6.85842 6.95268 7.09016 7.16355 7.38346 7.78220 7.96625 8.46549 8.53286 9.03238 9.79265 10.41818 11.23049 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.003586 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.283922 B = 7806.474947 C = 8081.120457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.155 3.845 4 H 0.035 0.965 5 C 0.135 3.865 6 H 0.094 0.906 7 N -0.712 5.712 8 C 0.547 3.453 9 O -0.546 6.546 10 C -0.195 4.195 11 C -0.068 4.068 12 C -0.105 4.105 13 C -0.143 4.143 14 C -0.108 4.108 15 C -0.144 4.144 16 C 0.141 3.859 17 N -0.589 5.589 18 C -0.324 4.324 19 H 0.057 0.943 20 C -0.021 4.021 21 N -0.912 5.912 22 Si 1.070 2.930 23 H -0.293 1.293 24 H -0.291 1.291 25 H -0.289 1.289 26 H 0.028 0.972 27 H 0.091 0.909 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.398 0.602 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.030 0.970 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 -0.025 -16.646 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.048 3.952 4 H 0.053 0.947 5 C 0.030 3.970 6 H 0.112 0.888 7 N -0.362 5.362 8 C 0.336 3.664 9 O -0.425 6.425 10 C -0.215 4.215 11 C -0.070 4.070 12 C -0.142 4.142 13 C -0.180 4.180 14 C -0.145 4.145 15 C -0.184 4.184 16 C 0.015 3.985 17 N -0.315 5.315 18 C -0.453 4.453 19 H 0.075 0.925 20 C -0.225 4.225 21 N -0.551 5.551 22 Si 0.900 3.100 23 H -0.220 1.220 24 H -0.218 1.218 25 H -0.216 1.216 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.149 0.851 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.810 -0.076 -14.644 17.627 hybrid contribution 0.389 -0.101 -1.800 1.844 sum 10.199 -0.178 -16.444 19.351 Atomic orbital electron populations 1.21848 0.95666 0.98695 1.04158 1.21850 0.97012 0.97582 0.99586 1.21245 0.89844 0.92377 0.91759 0.94732 1.22074 0.95744 0.99063 0.80076 0.88793 1.45940 1.18176 1.57869 1.14185 1.18395 0.81573 0.79073 0.87368 1.90760 1.52516 1.41268 1.57963 1.21662 0.96424 1.07451 0.96001 1.23422 0.92263 0.93504 0.97789 1.22203 0.92083 0.99528 1.00397 1.22727 0.96057 1.01488 0.97740 1.22337 0.94468 1.02939 0.94746 1.23145 0.99278 0.97839 0.98088 1.21547 0.85628 0.98328 0.92987 1.44419 1.01892 1.65477 1.19739 1.19568 0.84778 1.47890 0.93043 0.92510 1.25990 1.03885 0.98883 0.93704 1.70712 1.17276 1.29084 1.38068 0.83432 0.74852 0.76108 0.75579 1.22024 1.21768 1.21553 0.95301 0.89046 0.94389 0.94414 0.92580 0.76759 0.85141 0.89472 0.88545 0.90497 0.89782 0.88256 0.90510 0.91734 0.91746 0.93419 0.95194 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.14 37.15 0.34 -2.61 16 2 C -0.12 -2.42 5.46 -26.73 -0.15 -2.57 16 3 C 0.15 3.15 2.98 -66.95 -0.20 2.95 16 4 H 0.04 0.70 7.70 -51.93 -0.40 0.30 16 5 C 0.14 2.50 2.85 -66.09 -0.19 2.31 16 6 H 0.09 1.91 7.27 -51.93 -0.38 1.53 16 7 N -0.71 -10.76 5.17 -53.21 -0.28 -11.04 16 8 C 0.55 8.48 7.76 -12.67 -0.10 8.38 16 9 O -0.55 -10.32 14.80 5.26 0.08 -10.24 16 10 C -0.19 -2.30 10.03 -37.80 -0.38 -2.68 16 11 C -0.07 -0.74 6.93 -100.48 -0.70 -1.44 16 12 C -0.11 -1.12 6.99 -27.56 -0.19 -1.31 16 13 C -0.14 -1.11 8.17 -26.20 -0.21 -1.32 16 14 C -0.11 -0.82 7.95 -27.41 -0.22 -1.04 16 15 C -0.14 -2.76 6.76 -24.70 -0.17 -2.93 16 16 C 0.14 3.26 5.80 -2.65 -0.02 3.25 16 17 N -0.59 -14.31 2.82 -162.71 -0.46 -14.77 16 18 C -0.32 -8.64 7.02 -15.06 -0.11 -8.75 16 19 H 0.06 1.53 7.63 -52.49 -0.40 1.13 16 20 C -0.02 -0.58 5.23 -17.43 -0.09 -0.67 16 21 N -0.91 -27.01 13.14 55.49 0.73 -26.28 16 22 Si 1.07 24.92 29.97 -169.99 -5.09 19.83 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 2.15 5.68 -51.93 -0.29 1.86 16 28 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 5.02 8.35 -40.82 -0.34 4.67 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.09 1.11 7.49 -51.92 -0.39 0.72 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.03 0.75 6.68 -51.93 -0.35 0.41 16 43 H 0.27 8.12 6.18 -40.82 -0.25 7.87 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -31.11 343.00 -9.32 -40.43 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.09 Total: 5.32 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.37 Total: -8.41 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.00 Total: -52.09 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.11 -9.32 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087538871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.453 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds