Wall clock time and date at job start Tue Mar 31 2020 00:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 H 1.09004 * 109.87348 * 305.83106 * 3 2 1 5 5 C 1.54323 * 110.01124 * 184.73102 * 3 2 1 6 6 H 1.08997 * 110.72253 * 336.68048 * 5 3 2 7 7 N 1.46501 * 110.72152 * 99.95442 * 5 3 2 8 8 C 1.34770 * 120.00083 * 205.00125 * 7 5 3 9 9 O 1.21615 * 119.99992 * 359.97438 * 8 7 5 10 10 C 1.47101 * 119.99949 * 179.97438 * 8 7 5 11 11 C 1.32999 * 119.99915 * 179.97438 * 10 8 7 12 12 C 1.51400 * 136.31645 * 359.63638 * 11 10 8 13 13 C 1.53386 * 87.51881 * 206.05378 * 12 11 10 14 14 C 1.51409 * 136.31512 * 180.02562 * 11 10 8 15 15 C 1.55159 * 102.93884 * 218.31474 * 5 3 2 16 16 C 1.54682 * 101.67897 * 35.33951 * 15 5 3 17 17 N 1.47020 * 109.88362 * 66.84510 * 3 2 1 18 18 C 1.36939 * 125.64890 * 298.47772 * 17 3 2 19 19 H 1.08001 * 120.00111 * 326.23554 * 18 17 3 20 20 C 1.38814 * 120.00382 * 146.23082 * 18 17 3 21 21 N 1.31621 * 119.99481 * 339.16101 * 20 18 17 22 22 Si 1.86800 * 120.00104 * 159.15659 * 20 18 17 23 23 H 1.48503 * 109.46904 * 270.00470 * 22 20 18 24 24 H 1.48495 * 109.46937 * 30.00279 * 22 20 18 25 25 H 1.48492 * 109.46998 * 150.00519 * 22 20 18 26 26 H 1.08998 * 109.47064 * 171.18856 * 1 2 3 27 27 H 1.08996 * 109.47408 * 291.18621 * 1 2 3 28 28 H 1.09004 * 109.47165 * 51.18826 * 1 2 3 29 29 H 1.08998 * 109.47252 * 240.00194 * 2 1 3 30 30 H 1.09003 * 109.47370 * 119.99837 * 2 1 3 31 31 H 0.97001 * 119.99469 * 24.99959 * 7 5 3 32 32 H 1.08002 * 120.00010 * 0.02562 * 10 8 7 33 33 H 1.09008 * 113.56136 * 320.63358 * 12 11 10 34 34 H 1.08994 * 113.56465 * 91.36910 * 12 11 10 35 35 H 1.08993 * 113.96614 * 220.29520 * 13 12 11 36 36 H 1.09000 * 113.59652 * 88.79304 * 13 12 11 37 37 H 1.09001 * 113.55888 * 268.63203 * 14 11 10 38 38 H 1.09002 * 113.56212 * 39.28657 * 14 11 10 39 39 H 1.09003 * 110.99848 * 153.58005 * 15 5 3 40 40 H 1.09000 * 111.00905 * 277.42305 * 15 5 3 41 41 H 1.09005 * 110.39392 * 204.36340 * 16 15 5 42 42 H 1.09006 * 110.24143 * 82.10719 * 16 15 5 43 43 H 0.96993 * 120.00605 * 353.81065 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9919 -0.8311 5 6 3.5785 1.4587 -0.1196 6 1 4.0021 0.5159 0.2263 7 7 3.9883 1.7380 -1.4981 8 6 5.1898 1.3188 -1.9420 9 8 5.9339 0.7090 -1.1981 10 6 5.6010 1.5988 -3.3263 11 6 6.7869 1.1855 -3.7642 12 6 7.9666 0.4336 -3.1852 13 6 8.8441 1.1453 -4.2226 14 6 7.5627 1.2631 -5.0622 15 6 3.9878 2.6226 0.8213 16 6 2.9394 2.4952 1.9514 17 7 1.6941 2.0952 1.2712 18 6 0.4252 2.3025 1.7425 19 1 -0.3808 2.5046 1.0527 20 6 0.1748 2.2528 3.1070 21 7 1.0097 1.6235 3.9067 22 14 -1.3467 3.0790 3.8082 23 1 -1.0253 4.4829 4.1700 24 1 -2.4299 3.0652 2.7925 25 1 -1.7944 2.3458 5.0193 26 1 -0.3633 -1.0155 -0.1574 27 1 -0.3634 0.3714 0.9582 28 1 -0.3634 0.6441 -0.8008 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3949 2.2247 -2.0913 32 1 4.9403 2.1407 -3.9868 33 1 8.1981 0.7113 -2.1569 34 1 7.9091 -0.6452 -3.3298 35 1 9.6066 0.5076 -4.6697 36 1 9.2352 2.1032 -3.8797 37 1 7.3942 0.4120 -5.7219 38 1 7.4619 2.2205 -5.5734 39 1 4.9979 2.4780 1.2049 40 1 3.8977 3.5840 0.3157 41 1 2.8057 3.4526 2.4552 42 1 3.2448 1.7296 2.6647 43 1 1.7501 1.1191 3.5351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087538871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:49 Heat of formation + Delta-G solvation = -3.625059 kcal Electronic energy + Delta-G solvation = -22013.800725 eV Core-core repulsion = 18866.432372 eV Total energy + Delta-G solvation = -3147.368352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14297 -39.86730 -38.90679 -35.71852 -34.26568 -33.72500 -31.89398 -30.31824 -28.48400 -26.67938 -26.35425 -24.41945 -23.47940 -22.22527 -21.71260 -21.25045 -19.31328 -19.13649 -18.08337 -17.41669 -16.41615 -16.33448 -16.12842 -15.70254 -15.61432 -15.28832 -15.09630 -14.87101 -14.59917 -14.02455 -13.74091 -13.33068 -13.31718 -12.94380 -12.85922 -12.69182 -12.62840 -12.54470 -12.18495 -11.91076 -11.89406 -11.85793 -11.77039 -11.57106 -11.46640 -11.38307 -10.71704 -10.45218 -10.28752 -9.91197 -8.89666 -8.13439 -5.43917 0.38327 1.59527 1.67054 1.83345 2.12915 2.30754 2.66861 3.27043 3.35474 3.51722 3.59896 3.74999 3.77612 3.83965 4.07880 4.19427 4.25877 4.27060 4.38182 4.47427 4.55048 4.61535 4.66016 4.74997 4.84917 4.86685 4.91838 4.95734 4.99429 5.03456 5.04797 5.14412 5.21238 5.27065 5.33830 5.36320 5.57305 5.64906 5.67923 5.88751 6.40412 6.61621 6.96241 7.28066 7.72345 8.37397 9.06644 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.003586 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.283922 B = 7806.474947 C = 8081.120457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.155 3.845 4 H 0.052 0.948 5 C 0.151 3.849 6 H 0.072 0.928 7 N -0.702 5.702 8 C 0.543 3.457 9 O -0.588 6.588 10 C -0.208 4.208 11 C -0.070 4.070 12 C -0.122 4.122 13 C -0.133 4.133 14 C -0.093 4.093 15 C -0.128 4.128 16 C 0.145 3.855 17 N -0.606 5.606 18 C -0.314 4.314 19 H 0.058 0.942 20 C -0.076 4.076 21 N -0.947 5.947 22 Si 1.116 2.884 23 H -0.286 1.286 24 H -0.268 1.268 25 H -0.298 1.298 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.414 0.586 32 H 0.164 0.836 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.002 0.998 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.262 0.731 -20.266 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.048 3.952 4 H 0.070 0.930 5 C 0.045 3.955 6 H 0.091 0.909 7 N -0.352 5.352 8 C 0.334 3.666 9 O -0.470 6.470 10 C -0.229 4.229 11 C -0.072 4.072 12 C -0.159 4.159 13 C -0.171 4.171 14 C -0.129 4.129 15 C -0.167 4.167 16 C 0.019 3.981 17 N -0.332 5.332 18 C -0.443 4.443 19 H 0.075 0.925 20 C -0.273 4.273 21 N -0.589 5.589 22 Si 0.941 3.059 23 H -0.213 1.213 24 H -0.193 1.193 25 H -0.225 1.225 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.251 0.749 32 H 0.181 0.819 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.865 0.698 -18.331 20.829 hybrid contribution 0.460 -0.404 -0.736 0.957 sum 10.325 0.294 -19.067 21.685 Atomic orbital electron populations 1.21724 0.95401 1.00152 1.02392 1.21792 0.97158 0.97250 0.99442 1.21348 0.91196 0.92423 0.90202 0.93041 1.21625 0.94215 0.97710 0.81970 0.90941 1.45729 1.18656 1.58066 1.12777 1.19085 0.80842 0.77976 0.88694 1.90750 1.53636 1.43188 1.59465 1.21668 0.97707 1.09377 0.94119 1.23940 0.91648 0.91790 0.99821 1.22352 0.93735 1.00176 0.99629 1.22720 0.96540 1.01366 0.96427 1.22378 0.92481 1.04736 0.93335 1.22993 0.97990 0.99000 0.96757 1.21387 0.86707 0.96188 0.93817 1.44636 1.01561 1.66274 1.20744 1.19743 0.85657 1.45866 0.93017 0.92475 1.27266 1.05870 0.99395 0.94730 1.70837 1.18231 1.31396 1.38392 0.82821 0.72617 0.75234 0.75178 1.21303 1.19257 1.22451 0.93198 0.92897 0.92919 0.91623 0.95531 0.74851 0.81851 0.92549 0.88222 0.88510 0.89760 0.86283 0.88624 0.91350 0.90140 0.95530 0.98063 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.14 71.98 0.66 -4.79 16 2 C -0.12 -4.63 5.46 30.59 0.17 -4.46 16 3 C 0.15 6.19 2.98 45.34 0.14 6.32 16 4 H 0.05 1.93 7.70 -2.38 -0.02 1.91 16 5 C 0.15 5.52 2.85 46.18 0.13 5.65 16 6 H 0.07 3.01 7.27 -2.39 -0.02 2.99 16 7 N -0.70 -19.95 5.17 -440.51 -2.28 -22.23 16 8 C 0.54 16.17 7.76 86.57 0.67 16.84 16 9 O -0.59 -22.44 14.80 -4.08 -0.06 -22.50 16 10 C -0.21 -4.39 10.03 23.43 0.23 -4.15 16 11 C -0.07 -1.35 6.93 -17.17 -0.12 -1.47 16 12 C -0.12 -2.47 6.99 30.06 0.21 -2.26 16 13 C -0.13 -1.70 8.17 30.94 0.25 -1.45 16 14 C -0.09 -1.04 7.95 30.15 0.24 -0.80 16 15 C -0.13 -4.91 6.76 31.91 0.22 -4.69 16 16 C 0.14 6.97 5.80 86.78 0.50 7.48 16 17 N -0.61 -29.87 2.82 -668.68 -1.89 -31.75 16 18 C -0.31 -16.88 7.02 84.03 0.59 -16.29 16 19 H 0.06 3.05 7.63 -2.91 -0.02 3.03 16 20 C -0.08 -4.26 5.23 84.86 0.44 -3.82 16 21 N -0.95 -58.37 13.14 21.65 0.28 -58.09 16 22 Si 1.12 50.79 29.97 68.60 2.06 52.84 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 2.49 5.68 -2.39 -0.01 2.48 16 28 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.41 9.19 8.35 -92.71 -0.77 8.41 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.06 1.48 7.49 -2.38 -0.02 1.47 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.00 0.08 6.68 -2.38 -0.02 0.07 16 43 H 0.25 16.12 6.18 -92.71 -0.57 15.55 16 Total: -1.00 -70.57 343.00 2.86 -67.70 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.41 Total: 21.93 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.34 Total: -7.90 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -3.88 Total: -112.07 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.50 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.06 Total: 52.84 kcal Total: -70.57 2.86 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087538871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.078 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds