Wall clock time and date at job start Tue Mar 31 2020 00:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 H 1.08997 * 109.87410 * 54.19109 * 3 2 1 5 5 C 1.54327 * 110.01086 * 293.09315 * 3 2 1 6 6 H 1.09002 * 110.71959 * 336.68692 * 5 3 2 7 7 N 1.46503 * 110.71993 * 99.77337 * 5 3 2 8 8 C 1.34777 * 120.00439 * 204.99668 * 7 5 3 9 9 O 1.21618 * 119.99520 * 0.02562 * 8 7 5 10 10 C 1.47095 * 120.00265 * 180.02562 * 8 7 5 11 11 C 1.32611 * 124.62018 * 179.70234 * 10 8 7 12 12 C 1.51112 * 110.75779 * 179.84272 * 11 10 8 13 13 C 1.54577 * 104.90263 * 343.80217 * 12 11 10 14 14 C 1.51113 * 124.62153 * 0.02562 * 10 8 7 15 15 C 1.55154 * 102.94203 * 218.31902 * 5 3 2 16 16 C 1.54908 * 101.58332 * 35.50224 * 15 5 3 17 17 N 1.47017 * 109.88183 * 175.20910 * 3 2 1 18 18 C 1.36937 * 125.64773 * 298.24659 * 17 3 2 19 19 H 1.08000 * 120.00026 * 347.92105 * 18 17 3 20 20 C 1.38816 * 119.99966 * 167.92676 * 18 17 3 21 21 N 1.31617 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47271 * 59.99904 * 22 20 18 24 24 H 1.48493 * 109.47349 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47227 * 300.00159 * 22 20 18 26 26 H 1.09005 * 109.47155 * 185.45426 * 1 2 3 27 27 H 1.08999 * 109.47329 * 305.45550 * 1 2 3 28 28 H 1.08996 * 109.47285 * 65.45735 * 1 2 3 29 29 H 1.08997 * 109.46912 * 240.00260 * 2 1 3 30 30 H 1.08998 * 109.46804 * 119.99584 * 2 1 3 31 31 H 0.97005 * 119.99542 * 25.00868 * 7 5 3 32 32 H 1.08000 * 124.62331 * 0.02562 * 11 10 8 33 33 H 1.09008 * 110.51915 * 224.85286 * 12 11 10 34 34 H 1.08996 * 110.24829 * 102.61985 * 12 11 10 35 35 H 1.08996 * 110.98546 * 266.70919 * 13 12 11 36 36 H 1.09008 * 111.01373 * 142.92045 * 13 12 11 37 37 H 1.09006 * 110.36472 * 315.43958 * 14 10 8 38 38 H 1.08994 * 110.36497 * 77.75472 * 14 10 8 39 39 H 1.08999 * 111.00338 * 153.57903 * 15 5 3 40 40 H 1.09001 * 111.00420 * 277.42711 * 15 5 3 41 41 H 1.08998 * 110.36789 * 204.15249 * 16 15 5 42 42 H 1.08997 * 110.36533 * 81.82916 * 16 15 5 43 43 H 0.96998 * 120.00413 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9918 0.8313 5 6 1.6798 2.1300 -1.3339 6 1 1.5280 1.3905 -2.1202 7 7 0.4899 2.9706 -1.1790 8 6 -0.2828 3.2484 -2.2478 9 8 0.0075 2.8008 -3.3407 10 6 -1.4771 4.0928 -2.0924 11 6 -2.2966 4.4279 -3.0796 12 6 -3.4210 5.2993 -2.5700 13 6 -3.4027 5.1147 -1.0354 14 6 -1.9336 4.7024 -0.7872 15 6 2.9335 2.9953 -1.6286 16 6 4.0695 2.0907 -1.0891 17 7 3.5056 1.4547 0.1155 18 6 4.2272 0.9622 1.1699 19 1 3.7270 0.6976 2.0899 20 6 5.6015 0.8031 1.0565 21 7 6.2110 1.1251 -0.0647 22 14 6.5859 0.1319 2.4951 23 1 6.0948 -1.2263 2.8403 24 1 8.0212 0.0585 2.1216 25 1 6.4242 1.0293 3.6672 26 1 -0.3634 -1.0231 0.0977 27 1 -0.3634 0.5961 0.8371 28 1 -0.3633 0.4268 -0.9348 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.2584 3.3274 -0.3072 32 1 -2.1783 4.1177 -4.1073 33 1 -4.3757 4.9700 -2.9802 34 1 -3.2372 6.3420 -2.8288 35 1 -4.0875 4.3239 -0.7291 36 1 -3.6367 6.0498 -0.5263 37 1 -1.8766 3.9670 0.0155 38 1 -1.3296 5.5768 -0.5452 39 1 3.0463 3.1678 -2.6989 40 1 2.8937 3.9389 -1.0844 41 1 4.9410 2.6911 -0.8284 42 1 4.3357 1.3349 -1.8279 43 1 7.1713 1.0142 -0.1439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087539864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:46 Heat of formation + Delta-G solvation = -8.712473 kcal Electronic energy + Delta-G solvation = -22301.529031 eV Core-core repulsion = 19153.940072 eV Total energy + Delta-G solvation = -3147.588959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99336 -38.33433 -37.21776 -33.98822 -32.74063 -31.71322 -29.72395 -28.96169 -28.38632 -26.45319 -24.46474 -22.67459 -21.67828 -20.87744 -20.14636 -19.87995 -18.34782 -17.10511 -16.83276 -16.05857 -15.62651 -14.78290 -14.57858 -14.34337 -13.95793 -13.73312 -13.39233 -12.99116 -12.84267 -12.64295 -12.15845 -12.01035 -11.91551 -11.82202 -11.63945 -11.46149 -11.39487 -11.11848 -10.87190 -10.81955 -10.60430 -10.42560 -10.26153 -10.10269 -9.73956 -9.63031 -9.59286 -9.08932 -8.61558 -8.50930 -6.81591 -5.73108 -3.09691 1.37197 3.39096 3.42787 3.44569 3.45432 3.48088 4.32217 4.39554 4.49646 4.74580 4.92415 5.10364 5.28321 5.37281 5.43423 5.46195 5.54943 5.55266 5.57766 5.59407 5.72134 5.77684 5.82982 5.88238 5.92981 6.08014 6.19819 6.25789 6.34292 6.42306 6.43696 6.49098 6.59815 6.70498 6.77427 6.96737 7.17529 7.54168 7.60602 7.79535 7.81906 8.27694 8.47663 9.19186 9.80311 10.47639 11.37900 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030692 B = 0.004008 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.056832 B = 6983.574299 C = 7188.609385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.137 3.863 6 H 0.094 0.906 7 N -0.707 5.707 8 C 0.562 3.438 9 O -0.546 6.546 10 C -0.187 4.187 11 C -0.083 4.083 12 C -0.106 4.106 13 C -0.123 4.123 14 C -0.093 4.093 15 C -0.156 4.156 16 C 0.172 3.828 17 N -0.595 5.595 18 C -0.228 4.228 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.026 0.974 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 7.620 -1.778 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.052 0.948 5 C 0.032 3.968 6 H 0.112 0.888 7 N -0.356 5.356 8 C 0.350 3.650 9 O -0.426 6.426 10 C -0.190 4.190 11 C -0.103 4.103 12 C -0.143 4.143 13 C -0.160 4.160 14 C -0.130 4.130 15 C -0.196 4.196 16 C 0.047 3.953 17 N -0.319 5.319 18 C -0.356 4.356 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.154 0.846 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.044 0.956 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.437 7.242 -2.486 19.045 hybrid contribution 0.526 -0.287 1.108 1.260 sum -16.911 6.955 -1.378 18.337 Atomic orbital electron populations 1.21763 0.97258 1.00456 1.00920 1.22015 0.93598 0.99171 1.02374 1.21066 0.87148 0.93397 0.93091 0.94833 1.22118 0.83321 0.92553 0.98798 0.88806 1.45968 1.27019 1.51788 1.10872 1.17939 0.82459 0.80285 0.84361 1.90783 1.72691 1.53282 1.25806 1.21927 0.97387 1.02153 0.97543 1.23996 0.93827 0.93431 0.99020 1.21460 0.97559 0.99600 0.95664 1.22425 0.96293 1.01857 0.95455 1.21269 0.96162 1.00397 0.95180 1.23427 0.96727 0.99100 1.00351 1.21483 0.93196 0.93108 0.87482 1.44445 0.98506 1.69121 1.19842 1.18910 0.89388 1.36174 0.91128 0.90712 1.24869 0.96874 1.01152 0.97207 1.69913 1.08912 1.52886 1.24719 0.86221 0.79199 0.78966 0.81482 1.21125 1.21608 1.21157 0.93705 0.93477 0.93332 0.92417 0.91676 0.76820 0.84554 0.90394 0.89847 0.90851 0.90606 0.90683 0.90164 0.91955 0.92072 0.90282 0.95637 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.64 37.16 0.36 -1.86 16 2 C -0.13 -2.49 5.44 -26.73 -0.15 -2.64 16 3 C 0.16 3.24 2.91 -66.95 -0.19 3.04 16 4 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 5 C 0.14 2.53 2.09 -66.09 -0.14 2.39 16 6 H 0.09 1.90 7.19 -51.93 -0.37 1.53 16 7 N -0.71 -10.73 4.94 -53.21 -0.26 -10.99 16 8 C 0.56 8.85 7.79 -12.67 -0.10 8.75 16 9 O -0.55 -10.68 16.41 5.26 0.09 -10.59 16 10 C -0.19 -2.24 6.09 -102.73 -0.63 -2.87 16 11 C -0.08 -0.88 10.43 -36.01 -0.38 -1.25 16 12 C -0.11 -0.78 6.80 -26.85 -0.18 -0.97 16 13 C -0.12 -0.87 7.17 -25.07 -0.18 -1.05 16 14 C -0.09 -0.83 6.02 -26.85 -0.16 -0.99 16 15 C -0.16 -3.13 6.77 -24.58 -0.17 -3.30 16 16 C 0.17 4.21 5.46 -2.53 -0.01 4.20 16 17 N -0.59 -14.78 3.13 -162.57 -0.51 -15.29 16 18 C -0.23 -6.18 9.73 -15.06 -0.15 -6.32 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 21 N -0.92 -26.66 10.49 55.49 0.58 -26.08 16 22 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.75 7.46 -51.93 -0.39 0.36 16 29 H 0.06 1.16 8.03 -51.93 -0.42 0.75 16 30 H 0.06 1.31 7.86 -51.93 -0.41 0.90 16 31 H 0.40 5.12 7.37 -40.82 -0.30 4.82 16 32 H 0.14 1.49 8.03 -52.49 -0.42 1.07 16 33 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 2.13 6.75 -51.93 -0.35 1.78 16 42 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -31.15 343.41 -9.36 -40.50 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.24 Total: 3.56 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.17 Total: -3.08 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.19 Total: -52.37 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.15 -9.36 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087539864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.790 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds