Wall clock time and date at job start Tue Mar 31 2020 00:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46981 * 2 1 4 4 H 1.08997 * 109.87410 * 54.19109 * 3 2 1 5 5 C 1.54327 * 110.01086 * 293.09315 * 3 2 1 6 6 H 1.09002 * 110.71959 * 336.68692 * 5 3 2 7 7 N 1.46503 * 110.71993 * 99.77337 * 5 3 2 8 8 C 1.34777 * 120.00439 * 204.99668 * 7 5 3 9 9 O 1.21618 * 119.99520 * 0.02562 * 8 7 5 10 10 C 1.47095 * 120.00265 * 180.02562 * 8 7 5 11 11 C 1.32611 * 124.62018 * 179.70234 * 10 8 7 12 12 C 1.51112 * 110.75779 * 179.84272 * 11 10 8 13 13 C 1.54577 * 104.90263 * 343.80217 * 12 11 10 14 14 C 1.51113 * 124.62153 * 0.02562 * 10 8 7 15 15 C 1.55154 * 102.94203 * 218.31902 * 5 3 2 16 16 C 1.54908 * 101.58332 * 35.50224 * 15 5 3 17 17 N 1.47017 * 109.88183 * 175.20910 * 3 2 1 18 18 C 1.36937 * 125.64773 * 298.24659 * 17 3 2 19 19 H 1.08000 * 120.00026 * 347.92105 * 18 17 3 20 20 C 1.38816 * 119.99966 * 167.92676 * 18 17 3 21 21 N 1.31617 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47271 * 59.99904 * 22 20 18 24 24 H 1.48493 * 109.47349 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47227 * 300.00159 * 22 20 18 26 26 H 1.09005 * 109.47155 * 185.45426 * 1 2 3 27 27 H 1.08999 * 109.47329 * 305.45550 * 1 2 3 28 28 H 1.08996 * 109.47285 * 65.45735 * 1 2 3 29 29 H 1.08997 * 109.46912 * 240.00260 * 2 1 3 30 30 H 1.08998 * 109.46804 * 119.99584 * 2 1 3 31 31 H 0.97005 * 119.99542 * 25.00868 * 7 5 3 32 32 H 1.08000 * 124.62331 * 0.02562 * 11 10 8 33 33 H 1.09008 * 110.51915 * 224.85286 * 12 11 10 34 34 H 1.08996 * 110.24829 * 102.61985 * 12 11 10 35 35 H 1.08996 * 110.98546 * 266.70919 * 13 12 11 36 36 H 1.09008 * 111.01373 * 142.92045 * 13 12 11 37 37 H 1.09006 * 110.36472 * 315.43958 * 14 10 8 38 38 H 1.08994 * 110.36497 * 77.75472 * 14 10 8 39 39 H 1.08999 * 111.00338 * 153.57903 * 15 5 3 40 40 H 1.09001 * 111.00420 * 277.42711 * 15 5 3 41 41 H 1.08998 * 110.36789 * 204.15249 * 16 15 5 42 42 H 1.08997 * 110.36533 * 81.82916 * 16 15 5 43 43 H 0.96998 * 120.00413 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5981 1.9918 0.8313 5 6 1.6798 2.1300 -1.3339 6 1 1.5280 1.3905 -2.1202 7 7 0.4899 2.9706 -1.1790 8 6 -0.2828 3.2484 -2.2478 9 8 0.0075 2.8008 -3.3407 10 6 -1.4771 4.0928 -2.0924 11 6 -2.2966 4.4279 -3.0796 12 6 -3.4210 5.2993 -2.5700 13 6 -3.4027 5.1147 -1.0354 14 6 -1.9336 4.7024 -0.7872 15 6 2.9335 2.9953 -1.6286 16 6 4.0695 2.0907 -1.0891 17 7 3.5056 1.4547 0.1155 18 6 4.2272 0.9622 1.1699 19 1 3.7270 0.6976 2.0899 20 6 5.6015 0.8031 1.0565 21 7 6.2110 1.1251 -0.0647 22 14 6.5859 0.1319 2.4951 23 1 6.0948 -1.2263 2.8403 24 1 8.0212 0.0585 2.1216 25 1 6.4242 1.0293 3.6672 26 1 -0.3634 -1.0231 0.0977 27 1 -0.3634 0.5961 0.8371 28 1 -0.3633 0.4268 -0.9348 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.2584 3.3274 -0.3072 32 1 -2.1783 4.1177 -4.1073 33 1 -4.3757 4.9700 -2.9802 34 1 -3.2372 6.3420 -2.8288 35 1 -4.0875 4.3239 -0.7291 36 1 -3.6367 6.0498 -0.5263 37 1 -1.8766 3.9670 0.0155 38 1 -1.3296 5.5768 -0.5452 39 1 3.0463 3.1678 -2.6989 40 1 2.8937 3.9389 -1.0844 41 1 4.9410 2.6911 -0.8284 42 1 4.3357 1.3349 -1.8279 43 1 7.1713 1.0142 -0.1439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087539864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:46 Heat of formation + Delta-G solvation = -27.423894 kcal Electronic energy + Delta-G solvation = -22302.340419 eV Core-core repulsion = 19153.940072 eV Total energy + Delta-G solvation = -3148.400347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.23909 -39.64734 -38.40432 -35.64057 -34.31189 -33.50808 -31.10554 -30.15057 -29.25407 -27.97507 -26.36252 -24.06706 -22.93559 -22.08726 -21.50196 -21.41797 -19.53204 -18.76217 -18.06769 -17.44662 -16.73685 -16.39831 -15.87075 -15.83601 -15.60601 -15.29441 -14.81728 -14.37581 -13.82195 -13.72367 -13.57562 -13.54037 -13.26692 -12.95342 -12.85406 -12.68818 -12.60818 -12.55380 -12.25131 -12.07543 -12.03928 -11.98854 -11.95633 -11.91073 -11.56590 -11.39304 -10.94538 -10.67287 -10.09421 -9.76727 -8.85559 -7.83860 -5.22507 0.41992 1.47575 1.50598 1.56724 2.17478 2.30153 2.52676 3.34737 3.50201 3.63350 3.70799 3.82859 3.89837 4.12791 4.18641 4.26066 4.34261 4.36611 4.39256 4.58548 4.62814 4.72012 4.80964 4.86872 4.88035 4.94979 4.99326 5.02428 5.13389 5.16842 5.22656 5.28667 5.39819 5.43455 5.44531 5.49628 5.56019 5.58477 5.65763 5.71279 6.23015 6.59904 7.08777 7.25152 7.76565 8.43389 9.26385 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030692 B = 0.004008 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.056832 B = 6983.574299 C = 7188.609385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.052 0.948 5 C 0.155 3.845 6 H 0.075 0.925 7 N -0.695 5.695 8 C 0.560 3.440 9 O -0.592 6.592 10 C -0.212 4.212 11 C -0.072 4.072 12 C -0.102 4.102 13 C -0.117 4.117 14 C -0.090 4.090 15 C -0.142 4.142 16 C 0.181 3.819 17 N -0.613 5.613 18 C -0.234 4.234 19 H 0.084 0.916 20 C -0.063 4.063 21 N -0.951 5.951 22 Si 0.977 3.023 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.412 0.588 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.048 0.952 42 H -0.009 1.009 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.903 8.747 -0.211 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.070 0.930 5 C 0.049 3.951 6 H 0.093 0.907 7 N -0.345 5.345 8 C 0.350 3.650 9 O -0.475 6.475 10 C -0.214 4.214 11 C -0.091 4.091 12 C -0.139 4.139 13 C -0.155 4.155 14 C -0.127 4.127 15 C -0.182 4.182 16 C 0.055 3.945 17 N -0.338 5.338 18 C -0.363 4.363 19 H 0.102 0.898 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.200 1.200 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.249 0.751 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.009 0.991 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.473 8.385 -0.880 22.141 hybrid contribution 1.391 -0.627 0.540 1.619 sum -19.081 7.758 -0.340 20.601 Atomic orbital electron populations 1.21639 0.93860 1.01967 1.01597 1.21908 0.96478 0.97640 1.00601 1.21241 0.84607 0.94587 0.94292 0.93020 1.21652 0.84057 0.92107 0.97322 0.90718 1.45730 1.25761 1.51211 1.11808 1.18570 0.83119 0.79855 0.83416 1.90761 1.74010 1.55211 1.27500 1.21882 0.96453 1.03154 0.99958 1.24342 0.94141 0.92291 0.98369 1.21540 0.96778 0.99566 0.96022 1.22453 0.94908 1.03018 0.95077 1.21318 0.97473 1.00507 0.93442 1.23240 0.95752 0.98822 1.00347 1.21177 0.93859 0.92470 0.87008 1.44684 1.00641 1.69181 1.19290 1.19300 0.89854 1.35118 0.92005 0.89841 1.25695 0.98076 1.02134 0.99749 1.70136 1.08537 1.54476 1.26756 0.85177 0.77062 0.78544 0.78690 1.20417 1.22398 1.19995 0.92132 0.91417 0.93628 0.94660 0.93007 0.75060 0.85644 0.88692 0.88327 0.90304 0.88643 0.90133 0.89578 0.91745 0.90800 0.93409 0.99058 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.64 71.98 0.69 -3.06 16 2 C -0.13 -4.74 5.44 30.60 0.17 -4.57 16 3 C 0.16 6.34 2.91 45.34 0.13 6.47 16 4 H 0.05 1.91 7.72 -2.39 -0.02 1.89 16 5 C 0.15 5.73 2.09 46.18 0.10 5.82 16 6 H 0.07 3.11 7.19 -2.39 -0.02 3.09 16 7 N -0.70 -20.18 4.94 -440.50 -2.17 -22.35 16 8 C 0.56 17.15 7.79 86.57 0.67 17.83 16 9 O -0.59 -23.37 16.41 -4.09 -0.07 -23.44 16 10 C -0.21 -4.66 6.09 -18.57 -0.11 -4.77 16 11 C -0.07 -1.37 10.43 24.66 0.26 -1.11 16 12 C -0.10 -1.14 6.80 30.52 0.21 -0.93 16 13 C -0.12 -1.18 7.17 31.67 0.23 -0.95 16 14 C -0.09 -1.31 6.02 30.52 0.18 -1.13 16 15 C -0.14 -5.77 6.77 31.98 0.22 -5.56 16 16 C 0.18 9.22 5.46 86.85 0.47 9.70 16 17 N -0.61 -31.07 3.13 -668.26 -2.09 -33.16 16 18 C -0.23 -12.81 9.73 84.03 0.82 -11.99 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 21 N -0.95 -57.41 10.49 21.65 0.23 -57.18 16 22 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.32 7.46 -2.39 -0.02 1.30 16 29 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 30 H 0.05 2.06 7.86 -2.39 -0.02 2.04 16 31 H 0.41 9.62 7.37 -92.70 -0.68 8.94 16 32 H 0.13 2.62 8.03 -2.91 -0.02 2.60 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.08 1.07 7.83 -2.38 -0.02 1.05 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.05 2.72 6.75 -2.39 -0.02 2.70 16 42 H -0.01 -0.49 8.11 -2.39 -0.02 -0.51 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -70.13 343.41 2.72 -67.41 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.30 Total: 18.63 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.50 Total: 2.64 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -4.04 Total: -112.70 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.07 Total: -23.44 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.13 2.72 -67.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087539864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.988 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds