Wall clock time and date at job start Tue Mar 31 2020 00:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 120.00087 * 2 1 4 4 C 1.33000 * 120.00169 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99970 * 353.66927 * 4 2 1 6 6 O 1.21615 * 119.99689 * 5.29053 * 5 4 2 7 7 N 1.34768 * 120.00176 * 185.29585 * 5 4 2 8 8 C 1.48101 * 125.74556 * 180.02562 * 7 5 4 9 9 C 1.53844 * 103.41250 * 204.44109 * 8 7 5 10 10 H 1.09004 * 109.06762 * 73.84164 * 9 8 7 11 11 C 1.49849 * 114.34985 * 195.56162 * 9 8 7 12 12 C 1.51602 * 114.45049 * 66.01196 * 11 9 8 13 13 N 1.44524 * 113.00178 * 35.49664 * 12 11 9 14 14 C 1.36936 * 117.26900 * 150.68666 * 13 12 11 15 15 H 1.07996 * 120.00330 * 204.63961 * 14 13 12 16 16 C 1.38813 * 119.99846 * 24.63697 * 14 13 12 17 17 N 1.31625 * 120.00094 * 17.54648 * 16 14 13 18 18 Si 1.86795 * 120.00418 * 197.54625 * 16 14 13 19 19 H 1.48501 * 109.47101 * 270.00039 * 18 16 14 20 20 H 1.48507 * 109.47236 * 29.99758 * 18 16 14 21 21 H 1.48494 * 109.47667 * 149.99975 * 18 16 14 22 22 C 1.44407 * 125.46795 * 330.40371 * 13 12 11 23 23 C 1.52989 * 113.17632 * 34.93930 * 22 13 12 24 24 H 1.09004 * 112.80206 * 84.27295 * 23 22 13 25 25 C 1.47463 * 125.74363 * 0.02562 * 7 5 4 26 26 H 1.09003 * 109.46725 * 240.81447 * 1 2 3 27 27 H 1.08995 * 109.47039 * 0.81491 * 1 2 3 28 28 H 1.08998 * 109.46447 * 120.81679 * 1 2 3 29 29 H 1.09004 * 109.46477 * 239.99953 * 3 2 1 30 30 H 1.08998 * 109.47111 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.47596 * 120.00003 * 3 2 1 32 32 H 1.07997 * 120.00133 * 173.66293 * 4 2 1 33 33 H 1.09003 * 110.63028 * 322.92200 * 8 7 5 34 34 H 1.08997 * 110.63129 * 85.96165 * 8 7 5 35 35 H 1.09001 * 108.47000 * 187.51939 * 11 9 8 36 36 H 1.08997 * 108.46832 * 304.90304 * 11 9 8 37 37 H 1.08995 * 108.96057 * 274.49808 * 12 11 9 38 38 H 1.08991 * 108.68789 * 156.30317 * 12 11 9 39 39 H 0.96993 * 120.00502 * 180.02562 * 17 16 14 40 40 H 1.09000 * 108.74267 * 155.89170 * 22 13 12 41 41 H 1.08996 * 108.74625 * 274.10664 * 22 13 12 42 42 H 1.08999 * 110.03833 * 62.78885 * 25 7 5 43 43 H 1.08999 * 110.04602 * 301.33863 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1721 -1.1518 0.0005 5 6 1.4433 -2.4218 0.1416 6 8 0.2273 -2.4262 0.1609 7 7 2.1231 -3.5805 0.2494 8 6 1.5218 -4.9260 0.3957 9 6 2.6311 -5.7396 1.0843 10 1 2.6962 -5.4390 2.1301 11 6 2.4350 -7.2241 1.0265 12 6 2.5176 -7.8142 -0.3675 13 7 3.4911 -7.1508 -1.2048 14 6 4.0922 -7.8990 -2.1815 15 1 5.0636 -7.6149 -2.5584 16 6 3.4530 -9.0226 -2.6873 17 7 2.1600 -9.1838 -2.5013 18 14 4.4277 -10.3060 -3.6317 19 1 4.4290 -9.9623 -5.0764 20 1 5.8247 -10.3357 -3.1288 21 1 3.8045 -11.6403 -3.4410 22 6 3.8789 -5.7637 -1.1013 23 6 3.8904 -5.2475 0.3389 24 1 4.8218 -5.4696 0.8598 25 6 3.5909 -3.7219 0.2417 26 1 -0.3633 -0.5012 0.8972 27 1 -0.3633 1.0275 -0.0146 28 1 -0.3632 -0.5265 -0.8826 29 1 2.8872 1.3627 -0.8900 30 1 1.5523 2.1336 -0.0005 31 1 2.8872 1.3629 0.8899 32 1 3.2471 -1.1547 -0.1027 33 1 0.6315 -4.8826 1.0230 34 1 1.2850 -5.3490 -0.5806 35 1 3.1928 -7.6971 1.6511 36 1 1.4549 -7.4593 1.4414 37 1 1.5391 -7.7401 -0.8420 38 1 2.7857 -8.8674 -0.2856 39 1 1.7133 -9.9691 -2.8543 40 1 4.8771 -5.6466 -1.5233 41 1 3.1810 -5.1606 -1.6820 42 1 4.0208 -3.2017 1.0977 43 1 4.0002 -3.3191 -0.6847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087871106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:33 Heat of formation + Delta-G solvation = -12.993983 kcal Electronic energy + Delta-G solvation = -22447.792843 eV Core-core repulsion = 19300.018224 eV Total energy + Delta-G solvation = -3147.774619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56978 -39.89977 -37.26723 -36.22274 -34.40562 -33.07045 -31.94333 -29.75772 -28.61464 -28.21442 -27.05430 -25.56806 -23.53820 -23.05183 -21.31116 -19.85042 -18.86132 -18.39832 -18.05700 -17.14677 -16.87049 -16.24028 -15.88166 -15.51534 -15.31148 -15.21409 -14.74508 -14.67676 -14.45828 -14.15966 -13.85524 -13.58862 -13.39410 -13.25727 -13.17164 -12.93394 -12.70473 -12.64126 -12.39746 -12.33990 -12.24052 -12.00733 -11.84846 -11.56362 -11.36519 -11.00219 -10.63809 -10.49474 -10.13278 -9.51048 -8.70346 -7.80446 -5.32658 0.40822 1.45902 1.47373 1.57312 2.05521 2.29350 2.51667 3.27887 3.43577 3.50886 3.80041 3.84216 3.89852 3.94439 4.22842 4.27745 4.38636 4.47866 4.54873 4.59281 4.61899 4.67005 4.71698 4.78764 4.82333 4.88282 4.91801 4.98978 5.03810 5.06169 5.16598 5.21974 5.24500 5.34643 5.38836 5.52213 5.53008 5.67430 5.69126 5.88914 6.39475 6.61077 7.19301 7.21509 8.03733 8.27812 9.18523 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029921 B = 0.003999 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.572160 B = 6999.831369 C = 7145.206237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.026 4.026 3 C -0.121 4.121 4 C -0.246 4.246 5 C 0.545 3.455 6 O -0.590 6.590 7 N -0.617 5.617 8 C 0.120 3.880 9 C -0.077 4.077 10 H 0.096 0.904 11 C -0.117 4.117 12 C 0.202 3.798 13 N -0.604 5.604 14 C -0.278 4.278 15 H 0.071 0.929 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.287 1.287 20 H -0.267 1.267 21 H -0.294 1.294 22 C 0.164 3.836 23 C -0.098 4.098 24 H 0.125 0.875 25 C 0.111 3.889 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.066 0.934 37 H -0.008 1.008 38 H 0.020 0.980 39 H 0.247 0.753 40 H 0.049 0.951 41 H -0.015 1.015 42 H 0.103 0.897 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 18.182 9.563 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.177 4.177 4 C -0.266 4.266 5 C 0.340 3.660 6 O -0.473 6.473 7 N -0.350 5.350 8 C -0.003 4.003 9 C -0.096 4.096 10 H 0.115 0.885 11 C -0.155 4.155 12 C 0.076 3.924 13 N -0.327 5.327 14 C -0.408 4.408 15 H 0.089 0.911 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.191 1.191 21 H -0.220 1.220 22 C 0.038 3.962 23 C -0.118 4.118 24 H 0.143 0.857 25 C -0.011 4.011 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.169 0.831 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.010 0.990 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.003 0.997 42 H 0.121 0.879 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.749 18.157 9.554 20.857 hybrid contribution -0.219 -1.497 -1.087 1.863 sum 3.529 16.660 8.467 19.018 Atomic orbital electron populations 1.21029 0.92013 1.01907 1.02349 1.22937 0.96435 0.95809 0.87627 1.21084 1.00525 0.92012 1.04123 1.22398 1.01299 0.90254 1.12672 1.18942 0.86662 0.84379 0.76044 1.90737 1.15446 1.87501 1.53651 1.48731 1.08661 1.05718 1.71861 1.21961 0.96953 0.82127 0.99212 1.21122 0.94071 0.94336 1.00070 0.88546 1.20847 1.02137 0.94786 0.97768 1.19543 0.91031 0.93791 0.88015 1.43087 1.47607 1.06492 1.35495 1.19698 0.99240 1.07129 1.14761 0.91137 1.25797 0.95885 1.02523 1.00446 1.70317 1.08741 1.28840 1.50315 0.85297 0.78594 0.78428 0.78260 1.21363 1.19145 1.22041 1.20469 0.97185 0.84037 0.94478 1.22782 0.99127 0.93516 0.96356 0.85698 1.22610 0.78834 0.96378 1.03327 0.91827 0.90234 0.92575 0.89355 0.89905 0.88950 0.83123 0.91532 0.94673 0.90948 0.91570 0.98974 0.96133 0.94380 0.93276 0.99708 0.87931 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.35 71.24 0.59 -2.08 16 2 C -0.03 -0.52 6.11 -17.61 -0.11 -0.62 16 3 C -0.12 -1.31 10.07 71.24 0.72 -0.59 16 4 C -0.25 -5.67 9.18 23.43 0.22 -5.46 16 5 C 0.55 17.67 7.77 86.57 0.67 18.34 16 6 O -0.59 -23.18 13.39 -4.08 -0.05 -23.24 16 7 N -0.62 -19.37 3.33 -812.38 -2.71 -22.08 16 8 C 0.12 4.32 5.84 86.36 0.50 4.83 16 9 C -0.08 -2.39 2.69 -11.05 -0.03 -2.42 16 10 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 11 C -0.12 -4.22 5.47 29.12 0.16 -4.06 16 12 C 0.20 9.94 4.37 86.29 0.38 10.31 16 13 N -0.60 -30.32 3.17 -714.83 -2.27 -32.58 16 14 C -0.28 -15.38 9.32 84.03 0.78 -14.60 16 15 H 0.07 3.75 7.69 -2.91 -0.02 3.73 16 16 C -0.05 -2.91 4.81 84.86 0.41 -2.50 16 17 N -0.94 -56.81 10.78 21.65 0.23 -56.58 16 18 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 C 0.16 6.62 4.95 86.77 0.43 7.04 16 23 C -0.10 -2.87 3.98 -9.36 -0.04 -2.91 16 24 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 25 C 0.11 2.68 5.22 87.15 0.45 3.13 16 26 H 0.06 1.73 7.04 -2.39 -0.02 1.71 16 27 H 0.08 1.30 7.70 -2.39 -0.02 1.28 16 28 H 0.06 1.57 7.42 -2.39 -0.02 1.56 16 29 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.08 0.69 7.70 -2.39 -0.02 0.68 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.15 2.59 7.38 -2.91 -0.02 2.57 16 33 H 0.07 2.40 8.06 -2.39 -0.02 2.38 16 34 H 0.03 1.57 7.07 -2.39 -0.02 1.55 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H -0.01 -0.44 7.28 -2.39 -0.02 -0.46 16 38 H 0.02 1.12 6.91 -2.39 -0.02 1.10 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16 41 H -0.01 -0.66 6.90 -2.39 -0.02 -0.68 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.80 7.72 -2.39 -0.02 1.78 16 Total: -1.00 -72.74 331.61 3.35 -69.39 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.98 Total: 9.26 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.14 Total: 8.43 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.74 Total: -111.24 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.74 3.35 -69.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087871106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.400 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds