Wall clock time and date at job start Tue Mar 31 2020 00:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50706 * 120.00055 * 2 1 4 4 C 1.32995 * 120.00285 * 179.97438 * 2 1 3 5 5 C 1.47097 * 119.99733 * 0.02562 * 4 2 1 6 6 O 1.21616 * 119.99983 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99645 * 179.97438 * 5 4 2 8 8 C 1.48107 * 127.84657 * 359.97237 * 7 5 4 9 9 C 1.54316 * 104.71585 * 140.24837 * 8 7 5 10 10 H 1.08999 * 112.07441 * 146.94269 * 9 8 7 11 11 C 1.53767 * 109.07510 * 271.63398 * 9 8 7 12 12 N 1.47205 * 106.40226 * 94.28917 * 11 9 8 13 13 C 1.36931 * 126.70308 * 211.32883 * 12 11 9 14 14 H 1.07998 * 120.00220 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00184 * 0.02724 * 13 12 11 16 16 N 1.31619 * 119.99442 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46954 * 59.99925 * 17 15 13 19 19 H 1.48496 * 109.47340 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47487 * 300.00003 * 17 15 13 21 21 C 1.47211 * 106.59488 * 31.32958 * 12 11 9 22 22 C 1.53761 * 106.40829 * 328.67782 * 21 12 11 23 23 C 1.52997 * 112.90308 * 141.48043 * 22 21 12 24 24 C 1.48113 * 127.83964 * 179.97438 * 7 5 4 25 25 H 1.09001 * 109.46997 * 240.00525 * 1 2 3 26 26 H 1.09003 * 109.47513 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47331 * 120.00538 * 1 2 3 28 28 H 1.09001 * 109.46867 * 270.00079 * 3 2 1 29 29 H 1.08998 * 109.47218 * 29.99245 * 3 2 1 30 30 H 1.08996 * 109.47366 * 149.99984 * 3 2 1 31 31 H 1.07998 * 120.00042 * 180.02562 * 4 2 1 32 32 H 1.08996 * 110.39078 * 21.43206 * 8 7 5 33 33 H 1.08999 * 110.38703 * 259.05117 * 8 7 5 34 34 H 1.09001 * 110.06896 * 213.51855 * 11 9 8 35 35 H 1.08997 * 110.07244 * 335.05231 * 11 9 8 36 36 H 0.97001 * 119.99664 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.06832 * 209.44024 * 21 12 11 38 38 H 1.08999 * 110.06490 * 87.90804 * 21 12 11 39 39 H 1.09000 * 109.47341 * 301.24352 * 23 22 21 40 40 H 1.09000 * 109.47273 * 61.25145 * 23 22 21 41 41 H 1.08999 * 109.46728 * 181.24955 * 23 22 21 42 42 H 1.08998 * 110.39655 * 338.57233 * 24 7 5 43 43 H 1.09007 * 110.38713 * 100.95905 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4365 -2.4256 0.0005 6 8 0.2203 -2.4256 0.0005 7 7 2.1105 -3.5928 0.0005 8 6 3.5777 -3.7949 0.0000 9 6 3.8098 -4.9849 0.9546 10 1 4.6569 -5.5979 0.6466 11 6 3.9718 -4.4545 2.3887 12 7 2.6390 -4.5218 3.0099 13 6 2.1389 -3.6805 3.9675 14 1 1.1402 -3.8307 4.3501 15 6 2.9156 -2.6344 4.4465 16 7 4.1325 -2.4511 3.9798 17 14 2.2331 -1.4862 5.7523 18 1 1.8929 -2.2669 6.9690 19 1 3.2519 -0.4602 6.0907 20 1 1.0118 -0.8185 5.2351 21 6 1.9486 -5.6704 2.4005 22 6 2.4808 -5.7839 0.9624 23 6 2.6752 -7.2331 0.5120 24 6 1.5519 -4.9646 0.0010 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 2.4421 1.6198 -1.0277 29 1 1.6714 2.0648 0.5137 30 1 3.2129 1.1749 0.5138 31 1 3.2520 -1.1517 0.0009 32 1 4.0838 -2.9045 0.3728 33 1 3.9269 -4.0392 -1.0033 34 1 4.6739 -5.0788 2.9413 35 1 4.3234 -3.4230 2.3686 36 1 4.6754 -1.7204 4.3148 37 1 0.8727 -5.4967 2.3885 38 1 2.1751 -6.5805 2.9559 39 1 3.3740 -7.7317 1.1837 40 1 1.7169 -7.7521 0.5340 41 1 3.0733 -7.2480 -0.5026 42 1 0.5279 -4.9576 0.3747 43 1 1.5882 -5.3897 -1.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091455003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:38 Heat of formation + Delta-G solvation = 12.017599 kcal Electronic energy + Delta-G solvation = -23456.272216 eV Core-core repulsion = 20309.582180 eV Total energy + Delta-G solvation = -3146.690036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92700 -38.23490 -35.10252 -34.43644 -32.72834 -30.68019 -29.86948 -28.16086 -27.44846 -26.03421 -25.32889 -24.87409 -22.56826 -20.11275 -19.85622 -18.67795 -17.40047 -16.89037 -16.37179 -15.56577 -14.86156 -14.52933 -14.11030 -13.86697 -13.68411 -13.41714 -13.16882 -12.89383 -12.54611 -12.53754 -12.29691 -12.17620 -11.83158 -11.75913 -11.58349 -11.35457 -11.29817 -11.19368 -10.86951 -10.80238 -10.64650 -10.13814 -9.96675 -9.78288 -9.67654 -9.47536 -9.02028 -8.77283 -8.67285 -7.97227 -6.79775 -5.60625 -3.03022 1.86240 3.42697 3.46009 3.48417 3.56838 3.94078 4.52319 4.82763 5.10905 5.11825 5.18681 5.30883 5.51422 5.53668 5.60346 5.66846 5.69425 5.74272 5.77442 5.93180 5.96025 5.98103 6.05365 6.07092 6.11250 6.21385 6.30076 6.34093 6.38566 6.46521 6.49332 6.64754 6.74298 6.86176 6.88258 6.91643 7.07784 7.43047 7.64846 7.84998 8.22734 8.43330 8.84044 9.25695 9.86536 10.54081 11.40896 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.010202 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.815400 B = 2744.027699 C = 4386.158682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.051 4.051 3 C -0.121 4.121 4 C -0.207 4.207 5 C 0.577 3.423 6 O -0.556 6.556 7 N -0.601 5.601 8 C 0.116 3.884 9 C -0.124 4.124 10 H 0.080 0.920 11 C 0.141 3.859 12 N -0.589 5.589 13 C -0.209 4.209 14 H 0.074 0.926 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.910 3.090 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.146 3.854 22 C -0.092 4.092 23 C -0.121 4.121 24 C 0.125 3.875 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.004 0.996 35 H 0.126 0.874 36 H 0.251 0.749 37 H 0.040 0.960 38 H 0.017 0.983 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -0.640 -10.799 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.053 4.053 3 C -0.178 4.178 4 C -0.228 4.228 5 C 0.370 3.630 6 O -0.437 6.437 7 N -0.332 5.332 8 C -0.007 4.007 9 C -0.145 4.145 10 H 0.099 0.901 11 C 0.016 3.984 12 N -0.312 5.312 13 C -0.337 4.337 14 H 0.092 0.908 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.740 3.260 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.019 3.981 22 C -0.094 4.094 23 C -0.179 4.179 24 C 0.001 3.999 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.143 0.857 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.624 -0.315 -10.636 10.659 hybrid contribution -0.078 0.407 0.830 0.928 sum -0.701 0.092 -9.805 9.831 Atomic orbital electron populations 1.20969 0.91147 1.00281 1.04218 1.22411 0.96668 0.94361 0.91887 1.20946 1.00320 0.94402 1.02118 1.22305 1.00033 0.91738 1.08742 1.17949 0.86484 0.82942 0.75591 1.90707 1.13736 1.87165 1.52082 1.48422 1.07605 1.04987 1.72212 1.22420 0.81041 0.99402 0.97844 1.23248 0.96130 0.95130 0.99958 0.90144 1.21982 0.87056 1.03686 0.85723 1.44360 1.12489 1.29824 1.44535 1.18995 0.98140 1.05069 1.11484 0.90834 1.24654 0.96272 0.99051 1.00463 1.69564 1.08903 1.32981 1.45796 0.86209 0.77788 0.80581 0.81378 1.21324 1.21572 1.21215 1.21326 0.95784 0.91223 0.89766 1.22794 0.95629 0.94002 0.97014 1.21540 1.01369 0.94466 1.00517 1.22625 0.98091 0.81490 0.97661 0.89923 0.93596 0.90501 0.90966 0.91356 0.91101 0.85956 0.89952 0.92669 0.97792 0.85700 0.93841 0.94184 0.96519 0.92226 0.92774 0.92870 0.90626 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 8.33 36.00 0.30 -1.51 16 2 C -0.05 -0.84 6.11 -101.17 -0.62 -1.46 16 3 C -0.12 -1.55 9.98 36.01 0.36 -1.19 16 4 C -0.21 -3.81 9.15 -37.81 -0.35 -4.16 16 5 C 0.58 12.01 7.83 -12.67 -0.10 11.91 16 6 O -0.56 -12.67 13.33 5.26 0.07 -12.60 16 7 N -0.60 -11.55 3.32 -169.26 -0.56 -12.11 16 8 C 0.12 1.98 6.31 -2.47 -0.02 1.97 16 9 C -0.12 -2.23 3.65 -88.44 -0.32 -2.56 16 10 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 11 C 0.14 3.30 5.69 -3.26 -0.02 3.28 16 12 N -0.59 -14.99 3.39 -171.17 -0.58 -15.57 16 13 C -0.21 -5.89 10.34 -15.06 -0.16 -6.05 16 14 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 16 N -0.92 -26.22 10.08 55.49 0.56 -25.66 16 17 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 C 0.15 3.11 6.34 -3.26 -0.02 3.09 16 22 C -0.09 -1.59 1.15 -150.97 -0.17 -1.76 16 23 C -0.12 -1.61 8.73 37.16 0.32 -1.29 16 24 C 0.12 2.19 6.18 -1.11 -0.01 2.19 16 25 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 26 H 0.05 0.61 7.94 -51.93 -0.41 0.20 16 27 H 0.08 1.29 7.22 -51.93 -0.37 0.92 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.12 2.09 6.72 -52.49 -0.35 1.74 16 32 H 0.08 1.49 5.97 -51.93 -0.31 1.18 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.13 3.26 4.66 -51.93 -0.24 3.02 16 36 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.04 0.88 7.45 -51.93 -0.39 0.49 16 38 H 0.02 0.36 7.92 -51.93 -0.41 -0.05 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.46 7.24 -51.93 -0.38 1.09 16 43 H 0.06 0.86 7.99 -51.93 -0.42 0.45 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -31.57 335.62 -8.35 -39.92 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.99 Total: 1.29 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.89 Total: 2.10 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.58 Total: -53.34 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.57 -8.35 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091455003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.941 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds