Wall clock time and date at job start Tue Mar 31 2020 00:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50706 * 120.00055 * 2 1 4 4 C 1.32995 * 120.00285 * 179.97438 * 2 1 3 5 5 C 1.47097 * 119.99733 * 0.02562 * 4 2 1 6 6 O 1.21616 * 119.99983 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99645 * 179.97438 * 5 4 2 8 8 C 1.48107 * 127.84657 * 359.97237 * 7 5 4 9 9 C 1.54316 * 104.71585 * 140.24837 * 8 7 5 10 10 H 1.08999 * 112.07441 * 146.94269 * 9 8 7 11 11 C 1.53767 * 109.07510 * 271.63398 * 9 8 7 12 12 N 1.47205 * 106.40226 * 94.28917 * 11 9 8 13 13 C 1.36931 * 126.70308 * 211.32883 * 12 11 9 14 14 H 1.07998 * 120.00220 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00184 * 0.02724 * 13 12 11 16 16 N 1.31619 * 119.99442 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46954 * 59.99925 * 17 15 13 19 19 H 1.48496 * 109.47340 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47487 * 300.00003 * 17 15 13 21 21 C 1.47211 * 106.59488 * 31.32958 * 12 11 9 22 22 C 1.53761 * 106.40829 * 328.67782 * 21 12 11 23 23 C 1.52997 * 112.90308 * 141.48043 * 22 21 12 24 24 C 1.48113 * 127.83964 * 179.97438 * 7 5 4 25 25 H 1.09001 * 109.46997 * 240.00525 * 1 2 3 26 26 H 1.09003 * 109.47513 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47331 * 120.00538 * 1 2 3 28 28 H 1.09001 * 109.46867 * 270.00079 * 3 2 1 29 29 H 1.08998 * 109.47218 * 29.99245 * 3 2 1 30 30 H 1.08996 * 109.47366 * 149.99984 * 3 2 1 31 31 H 1.07998 * 120.00042 * 180.02562 * 4 2 1 32 32 H 1.08996 * 110.39078 * 21.43206 * 8 7 5 33 33 H 1.08999 * 110.38703 * 259.05117 * 8 7 5 34 34 H 1.09001 * 110.06896 * 213.51855 * 11 9 8 35 35 H 1.08997 * 110.07244 * 335.05231 * 11 9 8 36 36 H 0.97001 * 119.99664 * 180.02562 * 16 15 13 37 37 H 1.08997 * 110.06832 * 209.44024 * 21 12 11 38 38 H 1.08999 * 110.06490 * 87.90804 * 21 12 11 39 39 H 1.09000 * 109.47341 * 301.24352 * 23 22 21 40 40 H 1.09000 * 109.47273 * 61.25145 * 23 22 21 41 41 H 1.08999 * 109.46728 * 181.24955 * 23 22 21 42 42 H 1.08998 * 110.39655 * 338.57233 * 24 7 5 43 43 H 1.09007 * 110.38713 * 100.95905 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4365 -2.4256 0.0005 6 8 0.2203 -2.4256 0.0005 7 7 2.1105 -3.5928 0.0005 8 6 3.5777 -3.7949 0.0000 9 6 3.8098 -4.9849 0.9546 10 1 4.6569 -5.5979 0.6466 11 6 3.9718 -4.4545 2.3887 12 7 2.6390 -4.5218 3.0099 13 6 2.1389 -3.6805 3.9675 14 1 1.1402 -3.8307 4.3501 15 6 2.9156 -2.6344 4.4465 16 7 4.1325 -2.4511 3.9798 17 14 2.2331 -1.4862 5.7523 18 1 1.8929 -2.2669 6.9690 19 1 3.2519 -0.4602 6.0907 20 1 1.0118 -0.8185 5.2351 21 6 1.9486 -5.6704 2.4005 22 6 2.4808 -5.7839 0.9624 23 6 2.6752 -7.2331 0.5120 24 6 1.5519 -4.9646 0.0010 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 2.4421 1.6198 -1.0277 29 1 1.6714 2.0648 0.5137 30 1 3.2129 1.1749 0.5138 31 1 3.2520 -1.1517 0.0009 32 1 4.0838 -2.9045 0.3728 33 1 3.9269 -4.0392 -1.0033 34 1 4.6739 -5.0788 2.9413 35 1 4.3234 -3.4230 2.3686 36 1 4.6754 -1.7204 4.3148 37 1 0.8727 -5.4967 2.3885 38 1 2.1751 -6.5805 2.9559 39 1 3.3740 -7.7317 1.1837 40 1 1.7169 -7.7521 0.5340 41 1 3.0733 -7.2480 -0.5026 42 1 0.5279 -4.9576 0.3747 43 1 1.5882 -5.3897 -1.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091455003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:37 Heat of formation + Delta-G solvation = -6.854457 kcal Electronic energy + Delta-G solvation = -23457.090570 eV Core-core repulsion = 20309.582180 eV Total energy + Delta-G solvation = -3147.508390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.43727 -39.78725 -36.60312 -36.05747 -34.43096 -32.43494 -31.52615 -29.47061 -28.65448 -27.77619 -26.78585 -26.48786 -24.26438 -21.83281 -21.29908 -20.19428 -18.81356 -18.79571 -17.96016 -17.03934 -16.75741 -16.16925 -15.62272 -15.53004 -15.17502 -14.84256 -14.50623 -14.34369 -14.15619 -13.77728 -13.71994 -13.52338 -13.27088 -13.19959 -13.18066 -12.93368 -12.80471 -12.62220 -12.51872 -12.45969 -12.19268 -12.00916 -11.76589 -11.45144 -11.31305 -11.11204 -10.81332 -10.53640 -10.13259 -9.44539 -8.81823 -7.73986 -5.18346 0.47507 1.39879 1.42284 1.47997 2.13621 2.45949 2.46934 3.30797 3.43581 3.72210 3.76959 3.83419 3.92461 3.98548 4.24904 4.30239 4.42181 4.48867 4.56020 4.67172 4.69424 4.71363 4.80218 4.83009 4.86266 4.88858 4.90288 4.96453 5.04468 5.12545 5.16172 5.23898 5.30003 5.35895 5.43973 5.53002 5.55700 5.63709 5.71925 5.88446 6.41702 6.74041 7.14492 7.30975 7.80396 8.47257 9.23690 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.010202 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.815400 B = 2744.027699 C = 4386.158682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.041 4.041 3 C -0.118 4.118 4 C -0.238 4.238 5 C 0.561 3.439 6 O -0.592 6.592 7 N -0.609 5.609 8 C 0.118 3.882 9 C -0.114 4.114 10 H 0.117 0.883 11 C 0.143 3.857 12 N -0.610 5.610 13 C -0.230 4.230 14 H 0.060 0.940 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.282 1.282 19 H -0.284 1.284 20 H -0.289 1.289 21 C 0.139 3.861 22 C -0.078 4.078 23 C -0.113 4.113 24 C 0.122 3.878 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.067 0.933 33 H 0.101 0.899 34 H -0.019 1.019 35 H 0.098 0.902 36 H 0.248 0.752 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -0.690 -12.644 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.043 4.043 3 C -0.174 4.174 4 C -0.259 4.259 5 C 0.355 3.645 6 O -0.476 6.476 7 N -0.339 5.339 8 C -0.004 4.004 9 C -0.134 4.134 10 H 0.135 0.865 11 C 0.018 3.982 12 N -0.334 5.334 13 C -0.359 4.359 14 H 0.078 0.922 15 C -0.245 4.245 16 N -0.585 5.585 17 Si 0.792 3.208 18 H -0.208 1.208 19 H -0.209 1.209 20 H -0.216 1.216 21 C 0.013 3.987 22 C -0.080 4.080 23 C -0.171 4.171 24 C -0.001 4.001 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.118 0.882 34 H -0.002 1.002 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.277 -0.406 -12.492 12.502 hybrid contribution -0.396 0.416 1.457 1.566 sum -0.118 0.010 -11.035 11.036 Atomic orbital electron populations 1.20897 0.91443 1.01723 1.02184 1.22885 0.96816 0.95612 0.89001 1.21026 0.99755 0.92463 1.04180 1.22386 1.00442 0.91485 1.11564 1.18477 0.86432 0.84212 0.75366 1.90674 1.15090 1.87800 1.54020 1.48609 1.08715 1.05205 1.71420 1.22546 0.79701 0.98373 0.99809 1.23194 0.97797 0.95986 0.96413 0.86461 1.21840 0.85667 1.01930 0.88799 1.44570 1.13662 1.30557 1.44563 1.19158 0.97891 1.06174 1.12715 0.92174 1.25295 0.96746 1.00190 1.02286 1.69793 1.09359 1.33036 1.46266 0.85388 0.77043 0.78951 0.79414 1.20806 1.20921 1.21606 1.21526 0.94700 0.89896 0.92574 1.22751 0.94551 0.96712 0.93990 1.21529 1.02426 0.90982 1.02152 1.22767 0.96651 0.81128 0.99508 0.93411 0.90232 0.91187 0.87950 0.89831 0.91363 0.85162 0.91469 0.88152 1.00152 0.88440 0.94233 0.96044 0.96168 0.91948 0.91635 0.89743 0.93348 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.48 8.33 71.23 0.59 -2.89 16 2 C -0.04 -1.33 6.11 -17.62 -0.11 -1.43 16 3 C -0.12 -2.73 9.98 71.24 0.71 -2.01 16 4 C -0.24 -8.80 9.15 23.43 0.21 -8.58 16 5 C 0.56 23.80 7.83 86.57 0.68 24.48 16 6 O -0.59 -28.03 13.33 -4.08 -0.05 -28.08 16 7 N -0.61 -23.08 3.32 -807.68 -2.68 -25.76 16 8 C 0.12 3.80 6.31 86.52 0.55 4.34 16 9 C -0.11 -3.86 3.65 -9.38 -0.03 -3.89 16 10 H 0.12 3.17 7.90 -2.39 -0.02 3.15 16 11 C 0.14 6.77 5.69 86.50 0.49 7.26 16 12 N -0.61 -31.92 3.39 -695.45 -2.36 -34.28 16 13 C -0.23 -13.50 10.34 84.03 0.87 -12.63 16 14 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 15 C -0.05 -3.00 5.49 84.86 0.47 -2.53 16 16 N -0.93 -54.31 10.08 21.65 0.22 -54.09 16 17 Si 0.96 47.33 29.55 68.60 2.03 49.36 16 18 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 21 C 0.14 6.00 6.34 86.50 0.55 6.55 16 22 C -0.08 -2.54 1.15 -49.89 -0.06 -2.59 16 23 C -0.11 -2.57 8.73 71.98 0.63 -1.94 16 24 C 0.12 4.14 6.18 87.40 0.54 4.68 16 25 H 0.05 1.91 7.22 -2.39 -0.02 1.90 16 26 H 0.08 2.01 7.94 -2.39 -0.02 1.99 16 27 H 0.07 2.38 7.22 -2.39 -0.02 2.37 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 30 H 0.07 1.64 8.07 -2.39 -0.02 1.62 16 31 H 0.13 4.47 6.72 -2.91 -0.02 4.45 16 32 H 0.07 2.38 5.97 -2.39 -0.01 2.37 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 35 H 0.10 5.21 4.66 -2.39 -0.01 5.20 16 36 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 38 H 0.02 0.86 7.92 -2.39 -0.02 0.84 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.90 7.24 -2.39 -0.02 1.88 16 43 H 0.09 2.52 7.99 -2.38 -0.02 2.50 16 Total: -1.00 -72.54 335.62 4.22 -68.32 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.98 Total: 15.74 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.09 Total: 8.79 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.82 Total: -114.13 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -72.54 4.22 -68.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091455003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.466 kcal (2) G-P(sol) polarization free energy of solvation -72.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds