Wall clock time and date at job start Tue Mar 31 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47381 * 2 1 4 4 H 1.09000 * 115.54635 * 29.27977 * 3 2 1 5 5 C 1.52999 * 117.50073 * 243.61075 * 3 2 1 6 6 C 1.53000 * 117.49814 * 174.98536 * 3 2 1 7 7 H 1.09001 * 117.50199 * 359.97438 * 6 3 2 8 8 C 1.50703 * 117.49669 * 214.97977 * 6 3 2 9 9 O 1.21287 * 119.99967 * 0.02562 * 8 6 3 10 10 N 1.34780 * 120.00094 * 180.02562 * 8 6 3 11 11 C 1.46493 * 120.00032 * 180.02562 * 10 8 6 12 12 H 1.09003 * 110.56161 * 33.20125 * 11 10 8 13 13 C 1.54850 * 110.62812 * 156.09747 * 11 10 8 14 14 C 1.55839 * 103.44685 * 118.48774 * 13 11 10 15 15 H 1.09002 * 115.56154 * 158.81427 * 14 13 11 16 16 C 1.55847 * 105.06609 * 287.42722 * 14 13 11 17 17 C 1.54848 * 103.44524 * 71.82294 * 16 14 13 18 18 C 1.55849 * 110.62752 * 270.29967 * 11 10 8 19 19 H 1.08995 * 115.56135 * 81.94357 * 18 11 10 20 20 N 1.50240 * 101.05322 * 32.94023 * 14 13 11 21 21 C 1.36935 * 130.84168 * 126.01672 * 20 14 13 22 22 H 1.08001 * 120.00500 * 180.02562 * 21 20 14 23 23 C 1.38818 * 119.99960 * 0.03328 * 21 20 14 24 24 N 1.31619 * 119.99705 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46991 * 60.00314 * 25 23 21 27 27 H 1.48499 * 109.47067 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46992 * 299.99915 * 25 23 21 29 29 H 1.09007 * 109.46987 * 60.00030 * 1 2 3 30 30 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47349 * 300.00124 * 1 2 3 32 32 H 1.09008 * 109.47333 * 240.00083 * 2 1 3 33 33 H 1.09007 * 109.47470 * 120.00187 * 2 1 3 34 34 H 1.09000 * 117.49923 * 359.97438 * 5 3 2 35 35 H 1.08996 * 117.49993 * 145.02444 * 5 3 2 36 36 H 0.96999 * 119.99400 * 359.97438 * 10 8 6 37 37 H 1.08995 * 110.63211 * 236.98245 * 13 11 10 38 38 H 1.09006 * 110.62516 * 0.02562 * 13 11 10 39 39 H 1.08998 * 110.62511 * 190.31351 * 16 14 13 40 40 H 1.08997 * 110.62337 * 313.32970 * 16 14 13 41 41 H 1.09001 * 110.62509 * 118.49232 * 17 16 14 42 42 H 1.08999 * 110.62704 * 241.34848 * 17 16 14 43 43 H 0.97004 * 119.99800 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1716 0.4810 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6578 0.1186 7 1 4.1802 0.7719 0.1971 8 6 4.0226 2.8620 0.8918 9 8 3.2155 3.6165 1.3920 10 7 5.3422 3.1005 1.0275 11 6 5.8015 4.2707 1.7795 12 1 5.1175 4.4920 2.5988 13 6 7.2377 4.0468 2.3135 14 6 8.0614 5.1746 1.6221 15 1 9.0007 5.4370 2.1090 16 6 8.1764 4.7362 0.1310 17 6 6.7441 4.9481 -0.4181 18 6 5.9488 5.5047 0.8390 19 1 5.0277 6.0478 0.6279 20 7 7.0371 6.2707 1.5406 21 6 7.0787 7.5692 1.9735 22 1 6.2275 8.2165 1.8220 23 6 8.2149 8.0536 2.6072 24 7 9.2520 7.2646 2.7922 25 14 8.2718 9.8250 3.1971 26 1 7.1859 10.0532 4.1841 27 1 9.5857 10.0921 3.8355 28 1 8.0893 10.7381 2.0403 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0103 1.1856 -2.0153 35 1 2.7217 2.9426 -1.5342 36 1 5.9877 2.4968 0.6277 37 1 7.2664 4.1596 3.3972 38 1 7.6084 3.0651 2.0184 39 1 8.8888 5.3670 -0.4008 40 1 8.4635 3.6871 0.0603 41 1 6.7462 5.6839 -1.2223 42 1 6.3219 4.0046 -0.7638 43 1 10.0461 7.6032 3.2346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096037329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:26 Heat of formation + Delta-G solvation = 23.864096 kcal Electronic energy + Delta-G solvation = -22221.209164 eV Core-core repulsion = 19075.032831 eV Total energy + Delta-G solvation = -3146.176333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.10372 -38.75131 -36.82746 -33.84226 -32.36019 -32.12311 -29.30458 -28.98701 -27.63013 -24.77861 -24.05240 -23.52616 -21.28675 -20.70416 -20.00999 -19.44409 -18.53154 -17.28051 -16.81180 -15.60778 -14.96851 -14.92546 -14.78004 -14.61225 -14.04242 -14.00572 -13.69495 -12.70660 -12.59260 -12.32767 -12.23176 -12.20170 -11.74189 -11.54038 -11.43802 -11.19613 -11.03751 -10.92468 -10.86675 -10.81346 -10.37028 -10.21212 -10.13858 -10.10819 -9.82633 -9.56030 -9.29774 -9.22493 -8.92054 -8.45602 -6.90497 -5.71906 -3.10044 2.72979 3.38806 3.42552 3.45258 3.47181 3.81604 4.44758 4.54992 4.67299 4.75192 5.00365 5.12867 5.16437 5.23528 5.26464 5.37983 5.51659 5.56989 5.65541 5.73153 5.77867 5.83495 5.85282 5.92305 5.94594 5.99436 6.08244 6.13906 6.23622 6.33740 6.34932 6.55439 6.61870 6.71730 6.83053 6.97651 7.00667 7.29387 7.52971 7.76743 7.90653 8.17817 8.57618 9.11239 9.73645 10.54287 11.37501 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035235 B = 0.003779 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.482357 B = 7407.581188 C = 7708.331890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.121 4.121 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.189 4.189 7 H 0.119 0.881 8 C 0.537 3.463 9 O -0.546 6.546 10 N -0.708 5.708 11 C 0.126 3.874 12 H 0.082 0.918 13 C -0.141 4.141 14 C 0.155 3.845 15 H 0.154 0.846 16 C -0.137 4.137 17 C -0.132 4.132 18 C 0.128 3.872 19 H 0.086 0.914 20 N -0.588 5.588 21 C -0.211 4.211 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.395 0.605 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 -15.291 -7.183 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.139 4.139 4 H 0.135 0.865 5 C -0.187 4.187 6 C -0.210 4.210 7 H 0.137 0.863 8 C 0.322 3.678 9 O -0.423 6.423 10 N -0.358 5.358 11 C 0.020 3.980 12 H 0.100 0.900 13 C -0.181 4.181 14 C 0.048 3.952 15 H 0.170 0.830 16 C -0.177 4.177 17 C -0.172 4.172 18 C 0.019 3.981 19 H 0.104 0.896 20 N -0.309 5.309 21 C -0.339 4.339 22 H 0.096 0.904 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.748 3.252 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.475 -14.440 -6.642 18.504 hybrid contribution 0.452 0.545 0.057 0.710 sum -9.023 -13.895 -6.584 17.828 Atomic orbital electron populations 1.21738 0.95282 1.01473 1.02198 1.21147 0.96195 0.93822 1.01986 1.22454 0.91717 0.98475 1.01281 0.86473 1.23078 1.02188 1.03132 0.90268 1.22335 0.97418 0.99216 1.02043 0.86273 1.19603 0.82730 0.85375 0.80059 1.90686 1.53985 1.48875 1.48786 1.46170 1.06355 1.28277 1.54955 1.22643 0.95918 0.84779 0.94614 0.89993 1.23300 0.94646 0.99288 1.00865 1.23719 0.95957 0.84035 0.91497 0.82965 1.23023 0.95896 0.98303 1.00470 1.23402 0.96803 0.98886 0.98086 1.23770 0.92314 0.90528 0.91498 0.89587 1.46467 1.11210 1.07606 1.65576 1.19028 0.99773 0.84914 1.30192 0.90355 1.24702 0.96145 0.98416 1.01467 1.69433 1.05189 1.34348 1.48247 0.86100 0.76760 0.83882 0.78473 1.21187 1.21572 1.21258 0.92544 0.92756 0.92466 0.91780 0.91513 0.88054 0.88254 0.77042 0.91673 0.92755 0.92683 0.93598 0.93228 0.93010 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.87 37.15 0.37 -0.75 16 2 C -0.09 -0.77 6.21 -26.73 -0.17 -0.93 16 3 C -0.12 -1.28 5.25 -90.62 -0.48 -1.75 16 4 H 0.12 1.49 7.60 -51.93 -0.39 1.09 16 5 C -0.15 -1.48 9.88 -26.73 -0.26 -1.75 16 6 C -0.19 -2.14 5.91 -91.77 -0.54 -2.68 16 7 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 8 C 0.54 8.39 7.61 -10.98 -0.08 8.31 16 9 O -0.55 -10.84 15.92 5.55 0.09 -10.75 16 10 N -0.71 -10.73 3.72 -51.40 -0.19 -10.92 16 11 C 0.13 2.42 3.12 -65.44 -0.20 2.21 16 12 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 13 C -0.14 -2.72 6.20 -24.24 -0.15 -2.87 16 14 C 0.15 3.50 4.67 -62.80 -0.29 3.21 16 15 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 16 C -0.14 -2.66 6.45 -24.24 -0.16 -2.82 16 17 C -0.13 -2.45 6.40 -22.53 -0.14 -2.60 16 18 C 0.13 2.73 5.51 -60.96 -0.34 2.40 16 19 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 20 N -0.59 -14.83 3.00 -143.83 -0.43 -15.26 16 21 C -0.21 -5.88 10.58 -15.06 -0.16 -6.04 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.92 -26.32 10.47 55.49 0.58 -25.74 16 25 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 7.88 -51.92 -0.41 0.04 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.40 4.93 7.88 -40.82 -0.32 4.61 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.88 7.36 -51.93 -0.38 0.49 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.75 7.80 -51.93 -0.41 0.34 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.82 6.42 -51.93 -0.33 0.49 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -30.78 340.78 -9.66 -40.44 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.12 Total: 6.44 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.70 Total: -6.49 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.04 Total: -51.93 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.78 -9.66 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096037329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.308 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds