Wall clock time and date at job start Tue Mar 31 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47381 * 2 1 4 4 H 1.09000 * 115.54635 * 29.27977 * 3 2 1 5 5 C 1.52999 * 117.50073 * 243.61075 * 3 2 1 6 6 C 1.53000 * 117.49814 * 174.98536 * 3 2 1 7 7 H 1.09001 * 117.50199 * 359.97438 * 6 3 2 8 8 C 1.50703 * 117.49669 * 214.97977 * 6 3 2 9 9 O 1.21287 * 119.99967 * 0.02562 * 8 6 3 10 10 N 1.34780 * 120.00094 * 180.02562 * 8 6 3 11 11 C 1.46493 * 120.00032 * 180.02562 * 10 8 6 12 12 H 1.09003 * 110.56161 * 33.20125 * 11 10 8 13 13 C 1.54850 * 110.62812 * 156.09747 * 11 10 8 14 14 C 1.55839 * 103.44685 * 118.48774 * 13 11 10 15 15 H 1.09002 * 115.56154 * 158.81427 * 14 13 11 16 16 C 1.55847 * 105.06609 * 287.42722 * 14 13 11 17 17 C 1.54848 * 103.44524 * 71.82294 * 16 14 13 18 18 C 1.55849 * 110.62752 * 270.29967 * 11 10 8 19 19 H 1.08995 * 115.56135 * 81.94357 * 18 11 10 20 20 N 1.50240 * 101.05322 * 32.94023 * 14 13 11 21 21 C 1.36935 * 130.84168 * 126.01672 * 20 14 13 22 22 H 1.08001 * 120.00500 * 180.02562 * 21 20 14 23 23 C 1.38818 * 119.99960 * 0.03328 * 21 20 14 24 24 N 1.31619 * 119.99705 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00056 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46991 * 60.00314 * 25 23 21 27 27 H 1.48499 * 109.47067 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46992 * 299.99915 * 25 23 21 29 29 H 1.09007 * 109.46987 * 60.00030 * 1 2 3 30 30 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47349 * 300.00124 * 1 2 3 32 32 H 1.09008 * 109.47333 * 240.00083 * 2 1 3 33 33 H 1.09007 * 109.47470 * 120.00187 * 2 1 3 34 34 H 1.09000 * 117.49923 * 359.97438 * 5 3 2 35 35 H 1.08996 * 117.49993 * 145.02444 * 5 3 2 36 36 H 0.96999 * 119.99400 * 359.97438 * 10 8 6 37 37 H 1.08995 * 110.63211 * 236.98245 * 13 11 10 38 38 H 1.09006 * 110.62516 * 0.02562 * 13 11 10 39 39 H 1.08998 * 110.62511 * 190.31351 * 16 14 13 40 40 H 1.08997 * 110.62337 * 313.32970 * 16 14 13 41 41 H 1.09001 * 110.62509 * 118.49232 * 17 16 14 42 42 H 1.08999 * 110.62704 * 241.34848 * 17 16 14 43 43 H 0.97004 * 119.99800 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1716 0.4810 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6578 0.1186 7 1 4.1802 0.7719 0.1971 8 6 4.0226 2.8620 0.8918 9 8 3.2155 3.6165 1.3920 10 7 5.3422 3.1005 1.0275 11 6 5.8015 4.2707 1.7795 12 1 5.1175 4.4920 2.5988 13 6 7.2377 4.0468 2.3135 14 6 8.0614 5.1746 1.6221 15 1 9.0007 5.4370 2.1090 16 6 8.1764 4.7362 0.1310 17 6 6.7441 4.9481 -0.4181 18 6 5.9488 5.5047 0.8390 19 1 5.0277 6.0478 0.6279 20 7 7.0371 6.2707 1.5406 21 6 7.0787 7.5692 1.9735 22 1 6.2275 8.2165 1.8220 23 6 8.2149 8.0536 2.6072 24 7 9.2520 7.2646 2.7922 25 14 8.2718 9.8250 3.1971 26 1 7.1859 10.0532 4.1841 27 1 9.5857 10.0921 3.8355 28 1 8.0893 10.7381 2.0403 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0103 1.1856 -2.0153 35 1 2.7217 2.9426 -1.5342 36 1 5.9877 2.4968 0.6277 37 1 7.2664 4.1596 3.3972 38 1 7.6084 3.0651 2.0184 39 1 8.8888 5.3670 -0.4008 40 1 8.4635 3.6871 0.0603 41 1 6.7462 5.6839 -1.2223 42 1 6.3219 4.0046 -0.7638 43 1 10.0461 7.6032 3.2346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096037329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:25 Heat of formation + Delta-G solvation = 6.108929 kcal Electronic energy + Delta-G solvation = -22221.979086 eV Core-core repulsion = 19075.032831 eV Total energy + Delta-G solvation = -3146.946255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.49009 -40.14430 -37.86986 -35.43545 -34.19003 -32.86247 -31.05159 -30.68302 -29.27044 -26.40274 -25.20195 -24.49074 -22.78608 -21.77826 -21.29694 -20.89322 -20.15614 -18.92151 -18.23024 -16.96510 -16.81937 -16.34968 -15.99699 -15.66094 -15.57828 -15.11413 -14.99859 -14.10753 -13.98175 -13.51848 -13.45585 -13.33145 -13.21292 -12.94452 -12.87819 -12.79994 -12.63437 -12.37794 -12.14632 -12.03025 -11.91723 -11.88870 -11.58548 -11.22621 -11.14998 -11.04749 -10.95995 -10.77270 -10.67258 -9.97458 -8.87344 -7.81176 -5.20882 1.44745 1.47238 1.53401 1.56224 2.17954 2.49413 2.91996 3.31418 3.48557 3.72133 3.81835 3.90810 3.95983 4.05157 4.12898 4.25300 4.32525 4.41070 4.46359 4.52570 4.59859 4.61988 4.69115 4.81374 4.83064 4.94722 4.98953 5.03704 5.07307 5.13823 5.18605 5.22802 5.27304 5.31962 5.33539 5.44104 5.52788 5.55196 5.75378 5.87767 6.26041 6.67954 7.03912 7.36301 7.67111 8.53411 9.25307 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035235 B = 0.003779 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.482357 B = 7407.581188 C = 7708.331890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.126 4.126 4 H 0.086 0.914 5 C -0.135 4.135 6 C -0.189 4.189 7 H 0.155 0.845 8 C 0.532 3.468 9 O -0.596 6.596 10 N -0.693 5.693 11 C 0.145 3.855 12 H 0.047 0.953 13 C -0.126 4.126 14 C 0.139 3.861 15 H 0.120 0.880 16 C -0.126 4.126 17 C -0.115 4.115 18 C 0.116 3.884 19 H 0.065 0.935 20 N -0.617 5.617 21 C -0.229 4.229 22 H 0.070 0.930 23 C -0.062 4.062 24 N -0.943 5.943 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.281 1.281 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.415 0.585 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -18.183 -8.966 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.145 4.145 4 H 0.104 0.896 5 C -0.172 4.172 6 C -0.210 4.210 7 H 0.173 0.827 8 C 0.320 3.680 9 O -0.477 6.477 10 N -0.345 5.345 11 C 0.037 3.963 12 H 0.066 0.934 13 C -0.166 4.166 14 C 0.033 3.967 15 H 0.137 0.863 16 C -0.165 4.165 17 C -0.155 4.155 18 C 0.008 3.992 19 H 0.083 0.917 20 N -0.339 5.339 21 C -0.358 4.358 22 H 0.088 0.912 23 C -0.255 4.255 24 N -0.592 5.592 25 Si 0.805 3.195 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.208 1.208 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.253 0.747 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.494 -17.386 -8.461 21.540 hybrid contribution 0.374 1.454 0.617 1.624 sum -9.120 -15.931 -7.843 19.962 Atomic orbital electron populations 1.21752 0.95220 1.02242 1.01635 1.21150 0.96236 0.91987 1.03137 1.22478 0.90900 0.99503 1.01645 0.89577 1.23190 1.00471 1.03155 0.90384 1.22353 0.98232 0.98055 1.02338 0.82746 1.20440 0.82123 0.86042 0.79388 1.90677 1.55229 1.50966 1.50822 1.45914 1.06947 1.27180 1.54425 1.22068 0.95188 0.85574 0.93443 0.93449 1.23132 0.93910 1.00204 0.99317 1.23654 0.94688 0.84424 0.93969 0.86267 1.22925 0.95781 1.00404 0.97374 1.23296 0.95857 1.00197 0.96120 1.23901 0.91212 0.90859 0.93239 0.91664 1.46725 1.13279 1.07520 1.66386 1.19272 0.99658 0.86571 1.30318 0.91234 1.25425 0.96024 1.01940 1.02103 1.69663 1.05299 1.35454 1.48827 0.85177 0.76504 0.79866 0.77924 1.21014 1.21461 1.20757 0.92502 0.91277 0.93754 0.89593 0.91261 0.84597 0.89947 0.74678 0.93764 0.88413 0.94584 0.89208 0.94070 0.89247 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.87 71.98 0.71 -1.25 16 2 C -0.09 -1.15 6.21 30.59 0.19 -0.96 16 3 C -0.13 -2.42 5.25 -10.79 -0.06 -2.48 16 4 H 0.09 2.21 7.60 -2.39 -0.02 2.19 16 5 C -0.13 -2.23 9.88 30.60 0.30 -1.92 16 6 C -0.19 -3.65 5.91 -11.54 -0.07 -3.72 16 7 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 8 C 0.53 15.84 7.61 87.66 0.67 16.50 16 9 O -0.60 -24.11 15.92 -3.05 -0.05 -24.16 16 10 N -0.69 -19.30 3.72 -434.91 -1.62 -20.92 16 11 C 0.14 5.48 3.12 46.61 0.15 5.63 16 12 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 13 C -0.13 -4.71 6.20 32.21 0.20 -4.51 16 14 C 0.14 6.28 4.67 46.23 0.22 6.50 16 15 H 0.12 6.31 5.52 -2.39 -0.01 6.30 16 16 C -0.13 -4.59 6.45 32.21 0.21 -4.38 16 17 C -0.12 -4.05 6.40 33.32 0.21 -3.83 16 18 C 0.12 5.00 5.51 47.30 0.26 5.26 16 19 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 20 N -0.62 -31.97 3.00 -608.96 -1.83 -33.80 16 21 C -0.23 -13.25 10.58 84.04 0.89 -12.36 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 24 N -0.94 -55.26 10.47 21.65 0.23 -55.04 16 25 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.79 7.88 -2.38 -0.02 0.77 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.14 1.36 8.03 -2.39 -0.02 1.34 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.42 8.36 7.88 -92.71 -0.73 7.63 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 2.77 7.36 -2.38 -0.02 2.76 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 2.50 7.80 -2.39 -0.02 2.48 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 2.45 6.42 -2.39 -0.02 2.44 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -71.51 340.78 3.36 -68.15 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.26 Total: 21.65 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 4.34 Total: -4.62 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -3.22 Total: -109.75 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -71.51 3.36 -68.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096037329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.255 kcal (2) G-P(sol) polarization free energy of solvation -71.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds